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Till Schwämmle

@tschwammle.bsky.social
106 followers 191 following 2 posts

Postdoc Krebs Lab @EMBL Heidelberg & Kundaje Lab @Stanford Previously PhD Schulz Lab @MPI-MG

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Reposted by Till Schwämmle
nellykanata.bsky.social @nellykanata.bsky.social · 28/07/2026
I am very excited to share the work of my PhD with @eddaschulz.bsky.social, now on BioRxiv! 🎉 🧵⬇️ (1/9) How does the transcription↔️chromatin crosstalk ensure monoallelic expression?
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bioRxivpreprint @biorxivpreprint.bsky.social · 27/07/2026
Transcription-dependent heterochromatin at the Xist promoter shapes the random choice of the inactive X chromosome www.biorxiv.org/content/10.64898/20…
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Edda Schulz @eddaschulz.bsky.social · 20/01/2026
⚠️ The final work of two former PhD students Till @tschwammle.bsky.social and Verena @verenamutzel.bsky.social is out! ➡️⬅️ They dissect how memory can arise from antisense transcription using mathematical modelling 💻, genomics 🧬 and synthetic biology ⚒️! link.springer.com/article/10.1...
link.springer.com
Antisense transcription can induce expression memory via stable promoter repression - Genome Biology
Background The capacity of cells to retain a memory of previous signals enables acquisition of unique fates and adaptation to their environment. The underlying gene expression memory can arise from mu...
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Jacob Schreiber @jmschreiber91.bsky.social · 20/11/2025
My first @umasschan.bsky.social/@impvienna.bsky.social affiliated paper is up! tomtom-lite is a re-implementation of tomtom targeting the ML age of genomics. Fast annotations ("what is this motif?") and simple large-scale discovery of motifs. Check it out! academic.oup.com/bioinformati...
academic.oup.com
Tomtom-lite: accelerating Tomtom enables large-scale and real-time motif similarity scoring
AbstractSummary. Pairwise sequence similarity is a core operation in genomic analysis, yet most attention has been given to sequences made up of discrete c
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Max Planck Institute for Molecular Genetics @molgen.mpg.de · 04/11/2025
🧬 Interested in dissecting dose-dependent transcriptional regulation through epigenome editing and synthetic biology for your PhD? Apply by 07.01.2026 to join the lab of @eddaschulz.bsky.social @molgen.mpg.de & #IMPRS-BAC #gradschool. 👉 www.molgen.mpg.de/5099133/schu...
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Reposted by Till Schwämmle
Max Planck Institute for Molecular Genetics @molgen.mpg.de · 08/10/2025
Using a CRISPR screening approach, first author @tschwammle.bsky.social identified new regulators of Xist, and discovered a two-step process that controls and regulates this important gene behind X-inactivation Read more: www.molgen.mpg.de/2025-10-06-s... Publication: doi.org/10.1038/s415... 2/2
molgen.mpg.de
A switch and a dial
A study by the Schulz lab describes a novel regulatory principle involved in X-chromosome inactivation during development
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Till Schwämmle @tschwammle.bsky.social · 06/10/2025
Happy to share the 2nd part of my PhD @natsmb.nature.com! Using CRISPR screens, we uncover the TF-RE wiring underlying Xist regulation. Since the preprint, we've added a titration of Xist, showing that XCI is directly dependent on Xist levels. Check the Bluetorial by @eddaschulz.bsky.social 👇
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Nature Structural & Molecular Biology @natsmb.nature.com · 06/10/2025
New online: Reporter CRISPR screens decipher cis-regulatory and trans-regulatory principles at the Xist locus
go.nature.com
Reporter CRISPR screens decipher cis-regulatory and trans-regulatory principles at the Xist locus
Nature Structural & Molecular Biology, Published online: 06 October 2025; doi:10.1038/s41594-025-01686-3Here Schwämmle et al. develop CRISPR reporter screens to map transcription-factor-regulatory element interactions at the Xist locus, revealing a two-step mechanism integrating developmental and X-dosage signals to initiate X-chromosome inactivation.
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Anshul Kundaje @anshulkundaje.bsky.social · 19/08/2025
@jengreitz.bsky.social l & my lab want to co-hire a computational biologist/biostatistician with project management expertise to help map the regulatory code of the human genome and discover genetic mechanisms of disease. Details below careersearch.stanford.edu/jobs/computa... Plz RT
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Arnaud Krebs @arnaudkr.bsky.social · 18/08/2025
This is not a HiC map! Ever wondered if multiple enhancers get activated simultaneously? We measured chromatin accessibility on thousands of molecules by nanopore to create genome-wide co-accessibility maps. Proud of @mathias-boulanger.bsky.social @kasitc.bsky.social Biology in the thread👇
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Ming Tommy Tang @tommytang.bsky.social · 31/05/2025
CRISPR screen decodes SWI/SNF chromatin remodeling complex assembly www.nature.com/articles/s4...
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Konrad Chudzik @konrad-chudzik.bsky.social · 14/04/2025
🚨 Preprint alert 🚨 Excited to share our work on "Ab-trapping," an antibody artifact causing misleading peripheral ("rim") staining in imaging & genomics (IF, CUT&Tag, CUT&RUN). Antibodies fail to penetrate structures, accumulating at the periphery. A 🧵👇 doi.org/10.1101/2025...
doi.org
Ab-trapping - a peripheral staining artifact in antibody-based microscopy and genomics
Antibodies (Ab) are essential for detecting specific epitopes in microscopy and genomics, but can produce artifacts leading to erroneous interpretations. Here, we characterize a novel artifact, Ab-tra...
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Valentina Baderna @valentinabaderna.bsky.social · 08/04/2025
Happy to share the latest story from @arnaudkr.bsky.social's lab @embl.org! With @guidobarzaghi.bsky.social, we used Single Molecule Footprinting to quantify how often chromatin is accessible at enhancers after TF and chromatin environment changes! Check our preprint bit.ly/3XQMFxN + thread ⬇️ 1/11
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Arnaud Krebs @arnaudkr.bsky.social · 02/04/2025
The importance of moving away from bulk! Occupancy of Pol II at promoters is dramatically different between fly and mouse cells! When looking single molecule! Proud of the team! @kasitc.bsky.social @molinalab.bsky.social doi.org/10.1038/s443...
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Juliane Glaser @julianeg.bsky.social · 16/01/2025
It’s official 🎉 I am excited to share that I will start my lab this spring at the Max Planck Institute for Immunobiology and Epigenetics @mpi-ie.bsky.social in beautiful Freiburg 🤩🗻☀️ I am looking forward to new collaborations and working with the fantastic community in Freiburg & its surroundings!
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EMBL Events @events.embl.org · 19/12/2024
A throwback to last month's 'Quantitative biology to molecular mechanisms' conference – time to introduce the poster prize winners! #EMBLOmics A round of applause for: 🏅 Max Trauernicht 🏅 @ingridpelaez.bsky.social 🏅 Honorine Destain 🏅 Óscar García Blay Read on 👉🏻 s.embl.org/omx24-01-blog @embl.org
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Ingrid Pelaez Conde @ingridpelaez.bsky.social · 27/11/2024
I attended the ‘Quantitative Biology to Molecular Mechanisms’ conference at EMBL Heidelberg last week and had the incredible honor of winning one of the Poster Prizes! 🏆 A big thanks to the organizers and all the amazing speakers who shared their inspiring research with us. ✨ #EMBLOmics
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