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Tjibbe Donker

@tjibbed.bsky.social
648 followers 404 following 72 posts

Infectious Diseases Modeller at University Hospital Freiburg, working on antibiotic resistance, hospital-acquired pathogens, and patient referral networks. www.tjibbedonker.nl

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Reposted by Tjibbe Donker
Pleuni Pennings @pleunipennings.bsky.social · 29/09/2026
I am hiring a postdoc! Are you interested to work on population genetics/ drug resistance/ data? Want to work in Montpellier, France? Fastq files don't scare you? PhD required, start date hopefully Nov 1! (end date Sep 30 2028) Please share! abetterscientist.wordpress.com/2026/09/29/p...
abetterscientist.wordpress.com
Postdoc position on drug resistance evolution in Montpellier, France
I have some exciting news (again!). I got money from the region (Occitanie) to hire a postdoc (and later an engineer / technician) to work on drug resistance evolution in malaria (P. faciparum) and…
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Tjibbe Donker @tjibbed.bsky.social · 18/09/2026
Sometimes I charge at public charging points just because it offers me the best parking spot. I then view the extra cost per kWh (vs at home) as "premium parking cost"
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Tjibbe Donker @tjibbed.bsky.social · 29/07/2026
For the people at the back: Long-haul flights are less efficient because of the extra fuel needed to lift the extra fuel needed to fly the extra distance into the air. Finding a way to make a plane fly 2500 km further is just the same as making sure the fire does reach Bordeaux next time around.
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Tjibbe Donker @tjibbed.bsky.social · 29/07/2026
The world is literally burning. All because the oil industry got us all addicted to burning their product. In other news: Airbus and Qantas flex about how they are able to fit an additional 20.000 liter of fossil fuel into an airplane: www.theguardian.com/business/202...
theguardian.com
Qantas plane flies for more than 24 hours in record-breaking flight
The A350 landed in Toulouse 24 hours and 24 minutes after leaving Melbourne as airline plans direct London service
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Reposted by Tjibbe Donker
Marco Mancastroppa @marco-mancastroppa.bsky.social · 14/07/2026
🚨📣Call for abstracts now open! ARCANE Workshop on Adaptive Healthcare Networks & Antimicrobial Resistance 📍 Paris | 19–21 Oct 2026 arcane.sciencesconf.org?lang=en Scientific Committee: @pascalcrepey.bsky.social, @tjibbed.bsky.social, @andkarch.bsky.social, @vcolizza.bsky.social, Laura Temime
arcane.sciencesconf.org
ARCANE International Workshop - Sciencesconf.org
Sciencesconf.org
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Reposted by Tjibbe Donker
CARB-X @carb-x.bsky.social · 18/05/2026
If you're in London, don't miss CARB-X Executive Director @koutterson.bsky.social’s Fleming Initiative guest lecture at @imperialcollegeldn.bsky.social this Thursday, May 21 at 5:30 PM BST. #IDSky 🧪 🔗 Register here: bit.ly/4cVSEt9
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Reposted by Tjibbe Donker
Vittoria Colizza @vcolizza.bsky.social · 21/04/2026
What we choose to implement - and when - matters. Our work shows that proactive screening strategies can reduce transmission by ~40% vs reactive responses. A key lesson for preparedness. In PNAS Nexus: ow.ly/cLnu50YCrcn
ow.ly
Proactive vs. reactive COVID-19 screening in schools: Lessons from experimental protocols in France during the Delta and Omicron waves
Abstract. The COVID-19 pandemic prompted diverse policies to manage safety in schools, balancing transmission control with educational continuity. We evalu
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Reposted by Tjibbe Donker
Ursula Hofer @hoferu.bsky.social · 17/04/2026
Robert Read from Journal of Infection describing AI in publishing as a tsunami of custard 😂 #ESCMIDGlobal2026
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Tjibbe Donker @tjibbed.bsky.social · 08/04/2026
🤣🤣🤣
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Tjibbe Donker @tjibbed.bsky.social · 08/04/2026
Inderdaad! Ook in Amsterdam zijn er betere voorbeelden te vinden (Nieuwezijds Voor, bijv.). Ik heb vooral een probleem met het geschetste beeld dat er in NL bijna geen auto's rijden. Goed, het is beter dan in de meeste buitenlandse steden, maar dit gaat tegenvallen als mensen dit beeld krijgen.
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Tjibbe Donker @tjibbed.bsky.social · 08/04/2026
Het was een interessante puzzel die ik niet kon laten liggen
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Tjibbe Donker @tjibbed.bsky.social · 08/04/2026
Voor "kijk hoe Amsterdam een prachtige fietsstad geworden is" is het echt een slecht gekozen voorbeeld... Dat fietspad houdt precies bij dat busje op, en er kan daarna blijkbaar gewoon legaal op straat geparkeerd worden, waardoor de fietsers zich tussen de auto's en trams moeten drukken.
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Tjibbe Donker @tjibbed.bsky.social · 08/04/2026
It's the Zeilstraat, looking west from the Amstelveenseweg. Still not the most beautiful street to be cycling, to be honest.
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Tjibbe Donker @tjibbed.bsky.social · 04/04/2026
We're on a long trip in our EV, and more than ever before, non-EV drivers are (literally) lining up to ask questions about charging speed and costs. Not a lot of questions about range this time... I guess it's a matter of priorities.
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Tjibbe Donker @tjibbed.bsky.social · 24/03/2026
Me as well! Before a talk, I usually take everything (keys, phone, etc.) out of me pockets, because I know that otherwise I'll be fumbling around with it the entire time.
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Reposted by Tjibbe Donker
Vittoria Colizza @vcolizza.bsky.social · 10/03/2026
Two postdoc positions open at SUMOC (Sorbonne Université | INSERM), Paris, within the EPIcx lab. 🦠 Network epidemiology of healthcare-associated infections (ARCANE) 🧠 Coupled behavior–disease modeling (PREVIX) 2-y positions | Start June 2026 #epidemiology #networks #matrices
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Tjibbe Donker @tjibbed.bsky.social · 20/02/2026
I found this profoundly difficult to read, also because I have a 7-year-old daughter, and I would gladly spend eternity in hell to prevent this happening to her.
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Tjibbe Donker @tjibbed.bsky.social · 13/02/2026
That's amazing!
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Tjibbe Donker @tjibbed.bsky.social · 13/02/2026
The best Kate Bush 😉: youtu.be/LswKizinfJY?...
youtu.be
Kate Bush & Rowan Atkinson Do Bears.........
YouTube video by alfienoaks
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Tjibbe Donker @tjibbed.bsky.social · 03/02/2026
Cool graph, particularly from the point of view of the physics of accelerating / regenerative braking. One question though: what's the basis of the (regression) lines through the data points? Especially for ICE-petrol it looks really weird, with most of the data points below the line.
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Tjibbe Donker @tjibbed.bsky.social · 02/02/2026
Fun fact: the first draft of this paper was written November 2019, but somehow, something came in between.
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Tjibbe Donker @tjibbed.bsky.social · 30/01/2026
As part of the NeWIS project, we wrote a commentary in @cmijournal.bsky.social on the need for hospital network reconstruction for the control of antimicrobial resistance. "Towards a Europe-wide reconstruction and analysis of hospital networks" authors.elsevier.com/a/1mXF1,RGPg...
authors.elsevier.com
Please wait whilst we redirect you
All content on this site: Copyright © 2026 Elsevier B.V., its licensors, and contributors. All rights are reserved, including those for text and data mining, AI training, and similar technologies. For all open access content, the relevant licensing terms apply.
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Reposted by Tjibbe Donker
MESuRS Lab @mesurs-cnam.bsky.social · 22/01/2026
Nouvelle publication, avec la participation de Laura Temime, directrice du laboratoire MESuRS, sur les réseaux de soins et la prévention de la propagation des bactéries multirésistantes (RAM).
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Tjibbe Donker @tjibbed.bsky.social · 09/01/2026
The Met Office seems to grasp the gravity of the situation.
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Tjibbe Donker @tjibbed.bsky.social · 07/01/2026
This is *literally* a Black Mirror episode. en.wikipedia.org/wiki/Hang_th...
en.wikipedia.org
Hang the DJ - Wikipedia
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Reposted by Tjibbe Donker
c0nc0rdance @c0nc0rdance.bsky.social · 16/09/2023
I don't think I've ever talked on Bluesky about why I hate the Foo Fighters and Dave Grohl. Don't read any further unless you're prepared for uncomfortable truths about the "Nicest Guy in Rock", and his very substantial body count & subsequent cover-up.
Dave Grohl, throughout the years.
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Tjibbe Donker @tjibbed.bsky.social · 22/11/2025
Years ago, my mother had the chance to join one of his workshops. Together, we prepared by going through the available "scientific literature". So, immediately she started asking the right questions... After 10 minutes, she was kicked out because "this was clearly not for her" So proud of her
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Reposted by Tjibbe Donker
Raywat Deonandan 🍁🇨🇦 @deonandan.bsky.social · 21/11/2025
This motherfracker wants us to prove a negative. In science, you can prove a negative about causation by showing the causal pathway does not exist. “Vaccines do not cause autism” has been proven in every scientifically meaningful sense. Read on. Thread [1/9]
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Reposted by Tjibbe Donker
Shweta Bansal @bansallab.bsky.social · 20/11/2025
The CDC updated its vaccine page to claim "vaccines do not cause autism" is "not evidence-based" and studies were "ignored." This is an outrage. Decades of research have found no link. This isn't science, it's RFK Jr. using the CDC as propaganda. Children will die because of this.
CDC disinformation about the link between autism and vaccines
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Reposted by Tjibbe Donker
Kat Holt @katholt.bsky.social · 19/11/2025
#AMR #Klebsiella cause >100,000 neonatal deaths globally each year. Our new preprint shows more than half of #Klebsiella pneumoniae neonatal sepsis cases in African and South Asian are nosocomial, acquired through transmission in neonatal units. #WAAW doi.org/10.1101/2025...
figure showing estimated proportion of cases in clusters, for each site. range from 0.04 to 0.93, mean estimate in random effects model is 0.57 [0.46,0.68]
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Reposted by Tjibbe Donker
HydrOrth Lab @hydrorth-lab.bsky.social · 06/11/2025
🌳💻 Scientific Programmer position (7 years, TVöD E13) Play an important role in the Cluster by making a contribution to the integration of process models for all components of the forest system, and by helping to shape research in this area. 📅 Apply by 3 Dec 2025 🔗 uni-freiburg.de/en/job/00004...
uni-freiburg.de
University of Freiburg
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Reposted by Tjibbe Donker
HydrOrth Lab @hydrorth-lab.bsky.social · 06/11/2025
🌳📢 Modeling Coordinator position (7 years, TVöD E13) Help coordinate modeling activities, develop synergies and collaborations, as well as contribute to socio-ecological modeling research, including your own studies. 📅 Apply by 3 Dec 2025 🔗 uni-freiburg.de/en/job/00004...
uni-freiburg.de
University of Freiburg
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Reposted by Tjibbe Donker
HydrOrth Lab @hydrorth-lab.bsky.social · 06/11/2025
Exciting news from the Future Forests Cluster of Excellence at the University of Freiburg (@uni-freiburg.de)! 🌲🌳 Applications are invited for two (7-year) positions in the Socio-Ecological Systems Modeling Lab of the Cluster: 1️⃣ Modeling Coordinator 2️⃣ Scientific Programmer Find details below 👇
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Jaap Burger @jaapburger.eu · 27/10/2025
“Basically, no matter what anyone tells you, a plug in hybrid is just a more complex petrol car. You are always either hauling a useless engine around or hauling a useless battery around. It will require the same amount of servicing as any petrol or diesel vehicle, it has 1000s more components…
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Tjibbe Donker @tjibbed.bsky.social · 25/10/2025
Sounds plausible. And looks beautiful, btw.
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Tjibbe Donker @tjibbed.bsky.social · 25/10/2025
Both my plantnet app and Google lens say it's a tobacco species... Weird. I'd love to hear from someone with proper botanical knowledge indeed. Or see what this turns into.
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Reposted by Tjibbe Donker
Tanja Stadler @tanjastadler.bsky.social · 25/10/2025
Open position at the Swiss Institute of Bioinformatics: We are looking for a Director of the Center of Pathogen Bioinformatics apply.refline.ch/499599/0346/... I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
apply.refline.ch
Director, Center for Pathogen Bioinformatics
The Centre for Pathogen Bioinformatics (CPB) is a unit of SIB which offers expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project manage...
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Tjibbe Donker @tjibbed.bsky.social · 25/10/2025
Herr Blume sorgt dafür, dass alle Porsche-Fahrer in 35 Jahre ein H-Kennzeichen führen können.
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Tjibbe Donker @tjibbed.bsky.social · 26/09/2025
Tom Lehrer said some wise words about that www.youtube.com/watch?v=aIlJ...
youtube.com
Tom Lehrer - National Brotherhood Week
YouTube video by The Tom Lehrer Wisdom Channel
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Reposted by Tjibbe Donker
Al Yankovic @alyankovic.bsky.social · 27/07/2025
My last living musical hero is still my hero but unfortunately no longer living. RIP to the great, great Mr. Tom Lehrer.
Photo of Tom Lehrer
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Tjibbe Donker @tjibbed.bsky.social · 14/07/2025
"The possibility of prompt injection" was not on my list of the dangers of using LLMs for peer review" ( www.sciencedirect.com/science/arti... ). Then again, I didn't actually include a list, because I didn't use AI to write the bloody text.
sciencedirect.com
The dangers of using large language models for peer review
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Tjibbe Donker @tjibbed.bsky.social · 11/07/2025
To be fair, it's Orange for the same reason.
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Reposted by Tjibbe Donker
IDDjobs @iddjobs.org · 04/07/2025
PhD position (Rennes, France) Model hospital preparedness for infectious disease crises (PReViX project) with @pascalcrepey.bsky.social @Nicolas @Sirven @mtsofonea.bsky.social at Ecole des Hautes Etudes en Santé Publique (EHESP) More details: iddjobs.org/jobs/2330
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Tjibbe Donker @tjibbed.bsky.social · 02/07/2025
Yes, that would also be my guess
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Dr. Julie Teresa Shapiro @juliethebatgirl.bsky.social · 02/07/2025
Nothing could be more flattering, thank you so much @gmknght.bsky.social for highlighting our paper! We found that for some #bacteria 🧫 , connectivity between hospital wards is as / more important for explaining #AMR as antibiotic consumption, especially for highly resistant 🏥 endemics
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Tjibbe Donker @tjibbed.bsky.social · 02/07/2025
My pleasure, Julie. Honestly, it was quite a positive experience from a reviewer's perspective. A genuine discussion between reviewer and authors to improve the paper. Although I can imagine that from your side, it was a slightly more frustrating process.
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James Calbraith @jamescalbraith.co.uk · 01/07/2025
"it was the summer of 1918 and I was feeling a bit under the weather for no reason at all."
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Tjibbe Donker @tjibbed.bsky.social · 30/06/2025
Ooh, yes, I love that study. I was a reviewer on that one.
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Modernising Medical Microbiology @modmedmicro.bsky.social · 23/06/2025
Just like buses, here is a third role we are advertising for! Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis. Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July bit.ly/4ndKOhF
bit.ly
Job Details
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IDDjobs @iddjobs.org · 18/06/2025
Postdoc (Paris, France) Modelling the spread of antimicrobial-resistant bacteria over healthcare networks with Laura Temime at @mesurs-cnam More details: iddjobs.org/jobs/2323
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