Paper2Agent converts research papers into interactive artificial intelligence agents by turning manuscripts, code and data into model context protocol-based tool-invoking systems that reproduce origin...

A new web tool called StructureMASST lets anyone search the world’s public metabolomics data by chemical structure.

AbstractMotivation. Over the past years, substantial numbers of microbial species’ genomes have been deposited outside of conventional INSDC databases.Resu

Addressing biodiversity and climate crises requires a new generation of plant scientists, yet interest in plant-related careers is declining globally. A survey of 421 plant biologists revealed that t...

Using mass spectrometry-based tools to mine public untargeted MS/MS data revealed the vastly underappreciated diversity of bile acids hidden in plain sight and led to the discovery of previously unkno...

Identifying emerging novel psychoactive substances (NPS), using liquid chromatography high-resolution tandem mass spectrometry (LC-HR-MS/MS), is often hindered by their frequent absence from mass spec...

Opposing forces generated by exopolysaccharide trail binding versus type IV pilus retraction generate a high cyclic diGMP–high cyclic AMP state in Pseudomonas aeruginosa that promotes social motility.

Single-cell metabolomics (SCM) can probe metabolic heterogeneity but is hindered by low sensitivity for small molecules, limited scalability, and the lack of standardized frameworks for data analysis....

Abstract. Microbial community assembly is governed by the flow of carbon sources and other primary metabolites between species. However, central metabolism

Huang et al. report that L. acidophilus deficiency correlates with cognitive decline in cerebral ischemia patients. In cerebral ischemia mouse models, L. acidophilus supplementation enhances linoleic ...

Microbiome analyses of living trees show that a single tree can host approximately one trillion bacteria, with microbial communities distinctly partitioned between heartwood and sapwood and with minim...

Announcing taxburst for metagenome taxonomy!

Over billions of years, marine microorganisms evolved a vast genetic potential to produce the molecules we denote as natural products or secondary metabolites. While these molecules show promise as th...

To improve annotation in non-targeted metabolomics studies, authors develop a Multiplexed Chemical Metabolomics (MCheM) platform, combining post-column derivatization with integrated data processing. ...

Exclusive: Research on burden of antibiotic resistance for 122 countries predicts dire economic and health outcomes

The Korea MetAbolomics data rePository (KMAP), available at https://kbds.re.kr/KMAP , is a public repository for metabolomics datasets developed as a part of the Korea BioData Station (K-BDS). KMAP ar...

Mass spectrometry data mining tools enabled the creation of an MS/MS spectral library containing hundreds of N-acyl lipids, including conjugates with short-chain fatty acids. This resource enabled the...

Thanks for the highlight MAGic-MOLFUN 😎 - it is a great honor to work with so many talented early-career researchers to enhance computational genomics and metabolomics workflows, to also improve integ...