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rainca.bsky.social

@rainca.bsky.social
44 followers 26 following 2 posts
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in silico Plants @insilicoplants.bsky.social · 01/10/2026
💻 🍃 Bridging photosynthesis and #crop yield formation with a mechanistic #model of whole-plant carbon-nitrogen interaction buff.ly/7Umb15f #PlantScience
buff.ly
Bridging photosynthesis and crop yield formation with a mechanistic model of whole-plant carbon–nitrogen interaction
Abstract. Crop yield is determined by potential harvest organ size, source organ photosynthesis and carbohydrate partitioning. Filling the harvest organ ef
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in silico Plants @insilicoplants.bsky.social · 01/10/2026
by Tommaso Stella, Heidi Webber, Ehsan Rezaei, Senthold Asseng, Pierre Martre, Sibylle Dueri, Jose Rafael Guarin, Diego Pequeno, Daniel Calderini, Matthew Reynolds, Gemma Molero, Daniel Miralles, Guillermo Garcia, Gustavo Slafer, Francesco Giunta, Yean-Uk Kim, Chenzhi Wang, Alex Ruane, Frank Ewert
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in silico Plants @insilicoplants.bsky.social · 02/10/2026
💧 Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments buff.ly/kcoaRfU #PlantScience #CPlantBox #RootScience
buff.ly
Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments
Abstract. Plant growth and development involve the integration of numerous processes, influenced by both endogenous and exogenous factors. At any given tim
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in silico Plants @insilicoplants.bsky.social · 25/09/2026
🌽 Optimisation of Weighted Ensembles of #Genomic Prediction Models in #Maize by Shunichiro Tomura, Owen Powell, Melanie J Wilkinson, James Lefvre, and Mark Cooper @coeplantsuccess.bsky.social @qaafi.bsky.social buff.ly/wdm6aAa #PlantScience
buff.ly
Optimization of weighted ensembles of genomic prediction models in maize
Abstract. Ensembles of multiple genomic prediction models have demonstrated improved prediction performance over the individual models contributing to the
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in silico Plants @insilicoplants.bsky.social · 23/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We are seeking applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 The application deadline is tomorrow (Sept 24) ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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in silico Plants @insilicoplants.bsky.social · 19/09/2026
All of the entries are outstanding! Here's my favorite. See them all: www.plantsuccess.org/21-ways-to-c...
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in silico Plants @insilicoplants.bsky.social · 16/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We are seeking applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 Hurry! The application deadline is next week ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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in silico Plants @insilicoplants.bsky.social · 09/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We’re inviting applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 Apply by Sept 24, 2026 ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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Ryo Yokoyama @yokoyama-ryo.bsky.social · 03/09/2026
Can small reductions in Rubisco content improve nitrogen use in wheat without negatively impacting biomass or grain yield? academic.oup.com/jxb/article/... @jxbotany.bsky.social
academic.oup.com
Can small reductions in Rubisco content improve nitrogen use in wheat without negatively impacting biomass or grain yield?
Abstract. In this study, the level of Rubisco protein was reduced in wheat using RNAi, to test the hypothesis that photosynthesis, growth, and grain yield
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Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 31/08/2026
📣 Metabolomics expert position at @ceplas.bsky.social part part of the CEPLAS Academic Expert Career Programme (tenure-track). karriere.hhu.de/index.php?ac...
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in silico Plants @insilicoplants.bsky.social · 21/08/2026
NEW! Secondary Growth and Exodermal Barriers Shape Local Root Hydraulics: Modeling Insights in Tomato by @marcodago.bsky.social Rémy Schoppach @guillaumelobet.bsky.social Valentin Couvreur and @guillaumelobet.bsky.social buff.ly/iSmy0sm #PlantScience #horticulture #RootScience
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in silico Plants @insilicoplants.bsky.social · 18/08/2026
PhD position: Modelling Crop Growth and Resource Use at @wurplant.bsky.social 📅 Apply by 7 September 2026 buff.ly/gTPXTTf #PlantSciJobs
wur.nl
PhD position: Modelling Crop Growth and Resource Use
The greenhouse sector is changing rapidly. New cultivation systems, such as single-truss tomatoes, hybrid systems of greenhouses with vertical farms, and semi-closed greenhouses, have the potential…
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Marc Somssich @somssich.bsky.social · 18/08/2026
I have said it before: Trait Discovery is one of the most difficult steps in our research here @kwsgroup.bsky.social. We need more help for this! We are looking for a Computational Biologist to help with trait discovery in our #GenomeEditing Team. #PlantScience #PlantScienceJobs #PlantSciJobs
jobs.kws.com
Computational Biologist (m/f/d) - Genome Editing Trait Discovery
Computational Biologist (m/f/d) - Genome Editing Trait Discovery
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Reposted by @rainca.bsky.social
in silico Plants @insilicoplants.bsky.social · 18/08/2026
☀️🥬 Data-Driven Modeling of #Photosynthesis Regulation Under Oscillating Light Condition – In-Silico Exploration by Christian Portilla, Arviandy G Aribowo, Ramachandran Anantharaman, César A Gómez-Pérez and Leyla Özkan buff.ly/YMv59ie #PlantScience
doi.org
Data-driven modelling of photosynthesis regulation under oscillating light condition: in-silico exploration
Abstract. This paper explores the application of data-driven system identification techniques in the frequency domain to obtain simplified, control-oriente
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in silico Plants @insilicoplants.bsky.social · 15/08/2026
Coming soon: X-Palm: A predictive model for oil palm production that analyzes source-sink relationships and yield periodicity (Vezy et al.) Virtual Plant Laboratory: Comprehensive software for constructing, simulating, and visualizing functional-structural plant models (Morales et al.)
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in silico Plants @insilicoplants.bsky.social · 15/08/2026
Now available: 📰 PlantBiophysics.jl: a high-performance, modular software for prototyping and scaling biophysical models from leaf to canopy (Vezy et al.) 📰 ecAraCore: A temperature-aware metabolic model that simulates plant physiological responses to thermal stress (Wendering and Nikoloski) ...
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in silico Plants @insilicoplants.bsky.social · 15/08/2026
Is your work accessible to everyone? 🌿💻 Submit a Methods for Plant Modelling article to assist non-modelling researchers and students use and build upon your ✅ Algorithms & software ✅ Models ✅ Frameworks, platforms, or languages Click here for more information: academic.oup.com/insilicoplan...
Bridge the gap in plant science. Make your work accessible with our newest article type: Methods for Plant Modelling. Submit your work today! - in silico Plants
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in silico Plants @insilicoplants.bsky.social · 11/08/2026
Review: Moving beyond traditional GWAS models to detect rare variants in crops by Talissa Floriani and Alexander E. Lipka doi.org/10.1093/insi... #PlantScience
doi.org
Rare variants in crops: theoretical insights and emerging detection strategies
Abstract. Rare genetic variants play a pivotal role in shaping the genetic architecture of complex traits, yet their identification and characterization re
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in silico Plants @insilicoplants.bsky.social · 07/08/2026
📢The Call for Papers for in silico Plant’s Special Issue “Advances in Plant and Crop Modelling in the Era of Big Data and AI” is now open. 📅 Deadline: 31 August 2026 👩‍🔬 Guest Editors: Junqi Zhu, Karine Chenu, Bangyou Zheng, and Xinguang Zhu 📝 Find out more: buff.ly/NuXOA30
academic.oup.com
Calls for Papers: Virtual Special Issues
Increase the visibility of your research by submitting to one of our calls for papers listed below. Submissions to open calls are made via our regular submissi
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in silico Plants @insilicoplants.bsky.social · 07/08/2026
A new evolutionary functional-structural plant model for simulating root plasticity by Michael Renton, Hugo Salinas, Pieter Poot doi.org/10.1093/insi... #PlantScience #FSPM #phenotyping #RootScience
doi.org
Simulated evolution of phenotypic plasticity in a functional–structural plant root model
Abstract. We aimed to (i) develop a new computational functional–structural plant root model (FSPM) able to represent a wide range of realistic root system
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Botany One @botany.one · 05/08/2026
Larissa Verona: Where Water, Plants and Carbon Meet www.botany.one/larissa-vero... Botany One interviews Larissa Verona, an ecosystem ecologist exploring how Cerrado wetlands connect vegetation, water and the global carbon cycle. #Botany #PlantScience
botany.one
Larissa Verona: Where Water, Plants and Carbon Meet
Botany One interviews Larissa Verona, an ecosystem ecologist exploring how Cerrado wetlands connect vegetation, water and the global carbon cycle.
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in silico Plants @insilicoplants.bsky.social · 05/08/2026
Integrating functional-structural plant models into a data generation framework to simulate #photosynthesis by @dhelmrich.bsky.social Mona Giraud, Jens Gobbert, Hanno Scharr, Morris Riedel, Ebba Hvannberg, Andrea Schnepf buff.ly/wt0HVSy #PlantScience #CPlantBox @agrosphere-ibg-3.bsky.social
doi.org
Virtual world coupling with photosynthesis evaluation for synthetic data production
Abstract. In this work, we couple the functional–structural plant model CPlantBox to the Unreal Engine by exploiting the implemented raytracing pipeline to
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Reposted by @rainca.bsky.social
Botany One @botany.one · 03/08/2026
The Week in Botany August 3, 2026 www.botany.one/the-week-in-... Photosynthesis hidden in hornworts, who works to sustain the Amazon rainforest and why plants aren't passive. #Botany #PlantScience
botany.one
The Week in Botany August 3, 2026
Photosynthesis hidden in hornworts, who works to sustain the Amazon rainforest and why plants aren't passive.
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Reposted by @rainca.bsky.social
in silico Plants @insilicoplants.bsky.social · 30/07/2026
PlantBiophysics.jl - a reliable, modular, accurate, and high-performance platform that lowers the barrier to developing, fitting and simulating coupled biophysical processes across scales. buff.ly/bYkXaSB #PlantScience
doi.org
PlantBiophysics.jl: a high-performance, modular software for prototyping and scaling biophysical models from leaf to canopy
Abstract. Process-based biophysical models are essential for understanding and predicting plant responses to environment, yet their development and applica
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Association of Applied Biologists @aabiologists.bsky.social · 30/07/2026
Our final #ICPR26 award talk is from Tracy Lawson @proftlawson.bsky.social, this year's recipient of the ISPR Innovation award 🏆 Awarded for outstanding achievements to the transfer of photosynthesis research to society 🌎🌱👏👏 @ripeproject.bsky.social
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Association of Applied Biologists @aabiologists.bsky.social · 29/07/2026
#ICPR26 Plenaries continuing this morning with Lisa Ainsworth, Angad Mehta & Jaideep Mathur Taking us from canopies & future atmospheres to engineering artificial photosynthetic life forms to plastids & dynamic plant stress repsonses 🫘🌱> 🧪 > 🔬 @ibioillinois.bsky.social @ripeproject.bsky.social
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in silico Plants @insilicoplants.bsky.social · 25/07/2026
• "Stomata, the gatekeepers of photosynthesis" • "Engineering Photosynthesis" • "Light, Carbon, Code: Advances in Modeling Photosynthesis"
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in silico Plants @insilicoplants.bsky.social · 24/07/2026
StomaGAN: a novel method for generating artificial images of stomata for training neural networks by Jonathon Gibbs, Alexandra Gibbs buff.ly/vVShQnR #PlantScience #phenotyping
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Integrating phenotyping and modelling approaches StomaGAN: improving image-based analysis of stomata through generative adversarial networks
Abstract. Stomata regulate gas exchange between plants and the atmosphere, but analysing their morphology is challenging due to anatomical variability and
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in silico Plants @insilicoplants.bsky.social · 24/07/2026
A novel sensitivity analysis approach to understanding how geometric and material properties influence 3D parameterized maize stalk models by Joseph Carter, Ryan Hall, Douglas Cook buff.ly/tFtmsmO #PlantScience #maize
buff.ly
A data-driven sensitivity analysis of maize stalk models reveals the dominant factors influencing stalk strength
Abstract. Morphological factors significantly impact maize stalk strength, but no study has fully characterized the impact of maize stalk shape on stalk st
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Plants, People, Planet @plantspeopleplanet.bsky.social · 24/07/2026
We're very pleased to be at C4-60: From Kranz to Crops - Celebrating 60 Years of C4 Discovery! Chat to Managing Editor Bennett Young about publishing in Plants, People, Planet and @newphyt.bsky.social, and learn more about The New Phytologist Foundation's charitable mission. #PlantScience
Bennett Young stands behind an exhibition table at a conference.
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in silico Plants @insilicoplants.bsky.social · 23/07/2026
buff.ly/WegpPuR DM us to have your name added to the list!
go.bsky.app
Plant modelling scientists II
Join the conversation
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in silico Plants @insilicoplants.bsky.social · 22/07/2026
A new framework model of internal feedback responses to changes in plant carbon and nitrogen concentrations by Bethany L. Holland, Nicholas A. M. Monk, Richard H. Clayton, Colin P. Osborne buff.ly/rx5fxvm #PlantScience @sheffieldpps.bsky.social
buff.ly
Implementing a framework of carbon and nitrogen feedback responses into a plant resource allocation model
Abstract. The allocation of resources to roots and shoots can greatly alter total plant mass. Allocation is thought to be the consequence of uptake rates,
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Gabriel Schaaf @gabrielschaaf.bsky.social · 22/07/2026
Please share! 🌱🤖 Permanent W2 Professorship in crop & plant sciences @ PhenoRob, University of Bonn. Especially encouraged: crop genome engineering, sustainable pest control, or sustainable disease control. Expertise in one area is enough. Apply by Sept. 30, 2026. www.uni-bonn.de/en/universit...
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in silico Plants @insilicoplants.bsky.social · 21/07/2026
#PlantSciJobs
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in silico Plants @insilicoplants.bsky.social · 20/07/2026
🌟Welcome new isP Editor Andrea Schnepf!🌟 Prof. Schnepf is the Head of the Soil-, Root Systems and Rhizosphere Processes research group at @agrosphere-ibg-3.bsky.social. Her research focuses on plant-soil interactions. #PlantScience #SoilScience
Announcement introducing a new journal editor with a professional headshot and headline "Meet our newest editor!", affiliation shown as Institute of Bio- and Geosciences, Forschungszentrum Jülich, Germany, and the in silico Plants logo.
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Association of Applied Biologists @aabiologists.bsky.social · 16/07/2026
🌾ISRFG 2026 🌾 Don't miss our fantastic line-up of Keynotes, Plenaries & Invited Speakers👇 🗣️ @julie-gray.bsky.social @jmhibberd.bsky.social @thepallavisingh.bsky.social @bipinpandey.bsky.social @andrewrobertjones.bsky.social & many more! Check out the programme & register now!
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in silico Plants @insilicoplants.bsky.social · 14/07/2026
NEW! CropVision: A Multiscale EO-AI-Climate-Biophysical modelling framework for predicting crop performance in Australian wheat and sorghum systems buff.ly/JBEbH4N
doi.org
CropVision: A Multiscale EO-AI-Climate-Biophysical modelling framework for predicting crop performance in Australian wheat and sorghum systems
Abstract. Australian dryland grain production systems are under increasing pressure from climate variability, extremes and market uncertainty, driving the
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 08/07/2026
What an incredible #ProudMama moment, watching my son David become Dr. David. His PhD is from Loughborough University University in England with a focus on exercise and heat physiology 💪
Mary and Dr. David in his PhD robes  posing in front of the university sign
.Happy Dr. David in his hood and academic robes. Thoughtful David about to receive his diploma. David and Mahnoor waiting in the very hot line to get into the graduation hall.
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Ralf Reski @reskilab.bsky.social · 08/07/2026
Final push! The deadline for applications is in two days. Apply if you want to be my successor. #plantscijobs #plantscijob #plantsciencejob W 3 Professorship for Plant Biotechnology. Freiburg, Germany. uni-freiburg.de/en/job/00005...
uni-freiburg.de
University of Freiburg
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in silico Plants @insilicoplants.bsky.social · 08/07/2026
🧬 Changes in the leaf area-seed yield relationship in soybean driven by genetic, management and environments: implications for high-throughput phenotyping by Mariana Chiozza, Kyle Parmley, William Schapaugh, Antonio Asebedo, Asheesh Singh, Fernando Miguez buff.ly/jL4sPwv #PlantScience #phenotyping
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in silico Plants @insilicoplants.bsky.social · 08/07/2026
💻 🍃 Insights from utilizing data of different quality levels for simulating barley performance under Nordic conditions: The Agricultural Production Systems SIMulator #model evaluation buff.ly/DZxb7UI #PlantScience #APSIM
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Insights from utilizing data of different quality levels for simulating barley performance under Nordic conditions: The Agricultural Production Systems SIMulator model evaluation
Abstract. Crop model-aided ideotyping can accelerate the breeding of resilient barley cultivars. Yet, the accuracy of process descriptions in the crop mode
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in silico Plants @insilicoplants.bsky.social · 03/07/2026
🌽🌾 Disentangling the contribution of trait plasticity to improve the productivity of a #maize – #soybean intercrop system for the Midwest, USA by Elena Pelech, Jochem Evers @carlbernacchi.bsky.social buff.ly/kt2RNVy #PlantScience #model
buff.ly
Disentangling the contribution of trait plasticity to improve the productivity of a maize–soybean intercrop system for the Midwest, USA
Abstract. Crop yields in intercropping systems are the result of a combination of factors dominated by plastic responses in plant traits due to the heterog
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in silico Plants @insilicoplants.bsky.social · 02/07/2026
by Sathyanarayan Rao, Seyed Hamid Ahmadi, Daniel Leitner, Murilo Vianna @f-bauer.bsky.social Sabine Julia Seidel, Andrea Schnepf @agrosphere-ibg-3.bsky.social
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in silico Plants @insilicoplants.bsky.social · 02/07/2026
🍃 Review: Integrated Modeling Approaches for Agricultural Digital Twins: The Role of PBM, ABM, ML, and Model Coupling buff.ly/W3CkDnQ #PlantScience #model
doi.org
Integrated Modeling Approaches for Agricultural Digital twins: the role of Process Based Models, Agent Based Models, Machine Learning, and Model Coupling
Abstract. Process-based models (PBMs) provide a mechanistic foundation for simulating complex genotype, environment, and management interactions across mul
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Ben Long @botbml.bsky.social · 30/06/2026
PhD scholarship with Jing Zhang and Bob Furbank at @biologyanu.bsky.social working on improving photosynthesis in canola. Awesome opportunity! biology.anu.edu.au/research/pro...
biology.anu.edu.au
Delivering Step Changes in Canola Yield by Improving Pod Photosynthesis
Canola is Australia’s most valuable oilseed crop, yet its yield potential has plateaued despite decades of breeding and agronomic improvement. This PhD project aims to enhance photosynthesis to improv...
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Xabier Simón Martínez de Goñi @martinezgonixs.bsky.social · 01/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Cereal grafting in rice and pearl millet preserves photosynthetic performance and stomatal dynamics, establishing a platform for root-shoot communication studies
### Competing Interest Statement The authors have declared no competing interest. UKRI Future Leaders Fellowship, MR/Y016882/1
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The Pallavi Singh Lab @thepallavisinghlab.bsky.social · 01/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Cereal grafting in rice and pearl millet preserves photosynthetic performance and stomatal dynamics, establishing a platform for root-shoot communication studies
### Competing Interest Statement The authors have declared no competing interest. UKRI Future Leaders Fellowship, MR/Y016882/1
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The Pallavi Singh Lab @thepallavisinghlab.bsky.social · 01/07/2026
📢 New preprint alert from the Pallavi Singh Lab! Our team investigated the physiological influence of cereal grafting in rice and pearl millet. We found no impact on plant physiological performance, opening exciting new avenues for mechanistic studies on root-shoot signaling. 🌱 Read more below 👇
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New Phytologist @newphyt.bsky.social · 01/07/2026
Plants, People, Planet's Managing Editor Bennett Young and New Phytologist's Peer Review Manager Fiona Tooke are at Kew's State of the World's Plants & Fungi Symposium and ready to chat about The New Phytologist Foundation and its journals! #SOTWPF
Bennett Young and Fiona Tooke stand behind an exhibition table at an academic conference.
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Nature @nature.com · 29/06/2026
Sarah Blackford reflects on how early-career scientists and professional football players share similar motivations, pressures and challenges go.nature.com/4wglCL9
go.nature.com
The surprising career parallels between footballers and researchers
Nature - Sarah Blackford reflects on how early-career scientists and professional football players share similar motivations, pressures and challenges.
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