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Putri Prasetyaningrum

@putriningrum.bsky.social
242 followers 329 following 28 posts

🇮🇩(Indonesian) in 🇩🇪 Interested in protein🤝protein, Light and Gibberellin signalling, plant environmental adaptation, cat🐈‍⬛, music🎸 , history🏛️, anthropology🙇

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Reposted by Putri Prasetyaningrum
EMBL @embl.org · 21/09/2026
There is still time to apply for the EMBL International PhD Programme! 📢 Don’t miss this opportunity to receive dedicated mentoring while doing interdisciplinary research. Research groups across EMBL are recruiting now! bit.ly/4x9Edss
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Putri Prasetyaningrum @putriningrum.bsky.social · 18/09/2026
Wow! Congrats Rocky! 🎉
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Current Biology @currentbiology.bsky.social · 17/09/2026
New #cat just dropped! 😻 A first in over 100 years, a genomic study in CB by Eduardo Eizirik and team reveals a new species of 'tiger cat'. 👉 www.cell.com/current-biol... Meet the Tilcayo (Leopardus tilcayo)! (photo: Fernando Faciole/National Geographic) #cats
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Kasper van Gelderen @kaspervangelderen.bsky.social · 13/09/2026
Freddy Igiebor, a master student in the lab, used the tools developed in our lab to perform live and fixed imaging of phyB photobodies. Together with the help of Isabella Graf and Laeschkir Würthner, from the EMBL, he began to investigate the biophysical properties of phyB photobodies.
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Kasper van Gelderen @kaspervangelderen.bsky.social · 13/09/2026
phyB photobodies can have different properties between light conditions and cell types, and so can form molecular memory by retaining signaling biomolecules. phyB photobodies delay and modify light signalling events, so that the plant can react to light when it needs to, and not when it is forced to
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Kasper van Gelderen @kaspervangelderen.bsky.social · 13/09/2026
This paper was presented at the ISPP in Switzerland last week, just after the presentation of Meng. Our paper deals on how plant phytochrome B (phyB) photoreceptors, which are crucial environmental sensors of light quality and quantity, can form molecular condensates, called phyB photobodies.
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Kasper van Gelderen @kaspervangelderen.bsky.social · 13/09/2026
and has touched the work and lives of many of my colleagues. It’s a surreal experience that he is no longer there as a colleague, and he will be greatly missed. I want to dedicate this paper to his memory, and can only wish his close friends and family all the strength to deal with this sudden loss.
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Kasper van Gelderen @kaspervangelderen.bsky.social · 13/09/2026
The first preprint of my lab has just come out doi.org/10.64898/202... This paper came out at the same day on the sudden passing of Prof. Meng Chen. Without his work, this paper would not have existed. He was an extremely supportive member of the plant photobiology community..
doi.org
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Andreas Hiltbrunner @plantphotobiology.bsky.social · 11/09/2026
Congratulations to Laura Schmid from our lab for winning the poster prize at the Plant Photobiology meeting (ISPP 2026) in Les Diablerets (CH). Well done!
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Mariana Schuster @marischuster.bsky.social · 07/09/2026
I'm excited to share that my newly funded #ERCStG FRONTERA is recruiting two postdoctoral researchers at @ipbhalle.bsky.social 🌱🔬 If you are passionate about plant immunity, proteolysis, membrane proteins, or proteomics, I'd love to hear from you. 🧵 Please RT/share!
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Martin Balcerowicz @transcription.bsky.social · 27/08/2026
Glad to be hosting the #Thermomorphogenesis 2026 meeting at @dundee.ac.uk, with 3 days full of exciting research and discussions about recent advances in plant temperature responses. Very happy to be part of such a supportive community!
Photo of Thermomorphogenesis 2026 attendees in front the conference banner
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SNP2Prot @snp2prot.bsky.social · 13/08/2026
Mark your calendars‼️ The SNP2PROT team hosts the "Plant Genetic Variation meets Protein Architecture" international conference, 21-23 June 2027, at the Leopoldina, Halle (Saale). Join us for interdisciplinary discussions, coffee and networking! Registration opens: 17th October, 2026 ⏰ #SNP2Prot
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Bayer lab @bayerlab.bsky.social · 11/08/2026
Our latest preprint is online. www.biorxiv.org/content/10.6... Our exciting data show that embryonic patterning in Arabidopsis is kick-started by differential sensitivity towards auxin and not by differential distribution of auxin.
biorxiv.org
Before auxin distribution matters: Prepatterning of the Arabidopsis embryo axis by MPK6-dependent AUX/IAA8 phosphorylation
In growth and development of plants, the signaling molecule auxin plays an instrumental role. Many patterning processes are controlled by auxin signaling in a self-organizing matter. After fertilizati...
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Yadhusankar Sasidharan @yadhusankar.bsky.social · 11/08/2026
Excited to share the latest preprint from #TimingLab where we report the presence of maturing Guard Cells at the tip of the cotyledons in the ERECTA triple mutant embryos as early as 6 DAP!! Read more👇
er erl1 erl2 mutant developing embryo expressing FAMA at the tip of the cotyledon
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Dominique Bergmann @stanfordstomata.bsky.social · 10/08/2026
1/9 🧵New preprint from the lab! A midpoint in a long journey to understand specificity among bHLH transcription factors in plants. Part IV: how does an accessory domain guide specificity of heterodimerizing bHLHs? #PlantSci #TranscriptionFactors #stomata www.biorxiv.org/cgi/content/...
biorxiv.org
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Ronald Pierik @ronaldpierik.bsky.social · 25/07/2026
Many credits to @lisaoskam.bsky.social and Sanne Matton.
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Putri Prasetyaningrum @putriningrum.bsky.social · 24/07/2026
Thanks Martin! Yes I see differences in stomatal density as well, more data is coming! ;)
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Roll credits. The sequel is already in the growth chamber.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
"𝑨 𝑷𝒓𝒐𝒗𝒊𝒔𝒊𝒐𝒏𝒂𝒍 𝑴𝒐𝒅𝒆𝒍" We propose two levels of restraint on ICE1: transcript lowered in a GID1C-dependent manner, protein phosphorylated by MPK3/6. Whether that phosphorylation switches ICE1 on or off here, we do not yet know. We have marked it with a question mark.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
We tested a CRISPR genome-edited line in which the 𝐼𝐶𝐸1 CDS is removed (𝑖𝑐𝑒1-𝐶𝑅, @bayerlab.bsky.social). Its hypocotyls elongate under WL+FR as Col-0 does. 𝑖𝑐𝑒1-1 carries a substitution R236H (blocks MPK3/6 phosphorylation). In white light it matches Col-0. Under far-red it does not elongate.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Transcriptional hub analysis surfaces ICE1/SCRM, a transcription factor repressed under far-red only when GID1C is present. We propose it acts as a brake on elongation: far-red lowers ICE1, and growth follows. In 𝑔𝑖𝑑1𝑐 the repression fails.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Hypocotyl+root samples, 12 h WL+FR, 23,909 genes detected. 1,726 differentially expressed — WL+FR vs WL in each genotype, plus the constitutive 𝑔𝑖𝑑1𝑐 difference. 1,489 (86.3%) depend on GID1C for their light response. Of those, 1,362 no longer respond in 𝑔𝑖𝑑1𝑐.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
𝑔𝑖𝑑1𝑐 fails to elongate under WL+FR, and GA cannot rescue it. Either the far-red transcriptional programme depends on GID1C, or GID1C acts downstream of transcription. The two predictions differ. So we sequenced RNA.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
After 12 h WL+FR, GID1C-GUS accumulates in hypocotyl and root tip. GID1A and GID1B are unchanged. GID1C Transcript does not follow the GUS signal accumulation, and the GPS1 sensor (@xanderjones.bsky.social) shows no rise in bioactive GA — though it reports applied GA. Sensitivity, not supply.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Col-0 and 𝑔𝑖𝑑1𝑐 under WL+FR with 2 µM GA₄₊₇, 10 µM paclobutrazol, or mock. Col-0 under WL+FR: PAC abolishes elongation, 2 µM GA₄₊₇ enhances it. 𝑔𝑖𝑑1𝑐 elongates minimally under either. So 𝑔𝑖𝑑1𝑐 is not short of GA — it cannot use it in this context. GID1C sets GA sensitivity during the response.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Single and double mutants, each against its own wild-type background (Col-0 or Nossen). 𝑔𝑖𝑑1𝑎 is almost identical to the wild type. 𝑔𝑖𝑑1𝑏 is short under both light conditions. Only 𝑔𝑖𝑑1𝑐 shows a deficit specific to WL+FR. 𝑔𝑖𝑑1𝑐 complementation with 𝑝𝐺𝐼𝐷1𝐶:𝐺𝐼𝐷1𝐶-𝑚𝐶𝑖𝑡𝑟𝑖𝑛𝑒 restores the response.
A picture of three brothers from The Darjeeling Limited (2007 - Wes Anderson) representing the three Arabidopsis GA receptors: Jack (Jason Schwartzman, left) → GID1A, Peter (Adrien Brody, centre, sunglasses) → GID1C, Francis (Owen Wilson, bandaged, on the right) → GID1B.
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Putri Prasetyaningrum @putriningrum.bsky.social · 23/07/2026
Leaves absorb red and reflect far-red, so a close neighbour enriches the spectrum in far-red. Phytochrome B detects this; the plant elongates. Gibberellin is required. Its three receptors are not interchangeable — only one responds to far-red. A preprint thread: tinyurl.com/y5jyy9zc 🌱
"The Receptor Who Was Not Redundant"
Functional specialization of the gibberellin receptor GIBBERELLIN-INSENSITIVE DWARF 1C in plant neighbour detection
Prasetyaningrum et al, 2026
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Björn Usadel @usadellab.bsky.social · 23/07/2026
Join my group at @fz_juelich within the @ceplas.bsky.social excellence cluster. #PlantJobs We’re looking for a postdoc/senior scientist in plant single-cell and spatial transcriptomics recruiting.fz-juelich.de/jobposting/8...
recruiting.fz-juelich.de
Postdoctoral Researcher / Senior Scientist in the field of plant single-cell and spatial transcriptomics
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Sarah Courbier @scourbier.bsky.social · 29/06/2026
I've got something to "TORC" about! 😅 After 4 years building this project at @biologyunifreiburg.bsky.social, I'm so excited to share that my first independent preprint is now online! ✨ I hope you like it: doi.org/10.64898/202... A short thread... 🧵 #PlantSci #PlantScience
doi.org
The TARGET OF RAPAMYCIN (TOR) kinase controls shade-mediated hypocotyl elongation responses in Arabidopsis.
Plants perceive neighboring vegetation through an enrichment of far-red light (shade) in the environment. These changes in light quality trigger molecular and physiological responses aimed at outgrowi...
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Putri Prasetyaningrum @putriningrum.bsky.social · 16/05/2026
#Caturday Picasso chilling on his watch tower (a.k.a DIY cat stairs)
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Sjon Hartman @hartman-plantlab.com · 05/05/2026
So happy and proud to share our lab’s first #plantscience research article, revealing that angiosperms have the capacity to encode memory of flooding stress. A heroic effort by @aidamaric.bsky.social in collaboration with @djgibbs.bsky.social and others. A brief 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Şuayb Üstün @suaybuestuen.bsky.social · 24/04/2026
🚨 Paper out now in #ScienceAdvances @science.org 🌱🦠 Pathogens don’t just target protein degradation—they also hijack host translation. "Bacteria use P-body condensates to attenuate host translation during infection" ⚖️♻️ led by @manuelgonzalezfuen.bsky.social www.science.org/doi/10.1126/...
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Vinay Shukla @vinayshukla.bsky.social · 19/04/2026
It worked (after testing an ungodly number of combinations, see supp.)! Three human-derived modules, PHD3, SLY-VHL, HIFODD, form a fully functional O2-dependent proteolysis system in Arabidopsis. We could degrade reporters, TFs, even fluorescent proteins, all reversibly controlled by oxygen levels.
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Putri Prasetyaningrum @putriningrum.bsky.social · 20/04/2026
Very nice story! Congrats everyone 🎊🥳
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Khaled_Selim Lab @selimlab.bsky.social · 15/04/2026
#joboffer #Germany plz spread it I'm hiring a Junior leader (E13; 100% for 3-5 y) to start own independence w/ focus on #CryoEM SPA or ET Ideally 1-2y postdoc experience Plz get in touch, if you are interested in #Structural biology & #MicroBiochem @sfb1381.bsky.social @vaam-microbes.bsky.social
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The Sainsbury Laboratory @thesainsburylab.bsky.social · 08/04/2026
New Publication: A secreted citrus protease cleaves an outer membrane protein of the Huanglongbing pathogen (2026) www.tsl.ac.uk/publications/166327
doi.org
PNAS: A secreted citrus protease cleaves an outer membrane protein of the Huanglongbing pathogen (2026)
Plants secrete a variety of proteases as a defense response during infection by microbial pathogens. However, the relationship between their catalytic activities and antimicrobial functions remains largely unknown. Particularly, few biologically relevant substrates of these proteases have been identified. Huanglongbing (HLB) has been a major threat to the citrus industry worldwide. The HLB-associated bacterium, "Candidatus Liberibacter asiaticus" (Las), was previously shown to deploy an inhibitor of papain-like cysteine proteases (PLCPs) to promote disease in citrus. In this study, we identified an outer membrane protein (OMP) of Las, LasOMP1, as a substrate of the citrus PLCP CsRD21a. LasOMP1 is one of the most highly expressed genes in Las. CsRD21a cleaves LasOMP1 and produces cleaved peptide products, which could be detected in vitro and in HLB-diseased citrus plants. We found that CsRD21a targets the N-terminal portion of LasOMP1, potentially at an extracellular loop region. Importantly, transgenic sweet orange overexpressing CsRD21a showed reduced Las populations and improved plant growth, highlighting that engineering this protease is a promising strategy to enhance HLB resistance in citrus. Together, our work reveals a pathogen-derived substrate of plant PLCPs and suggests bacterial OMPs may be direct targets of plant defense.
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Torii Lab @stomata-tweets.bsky.social · 26/03/2026
Published! From a proteomic atlas of the ERECTA signaling network, we show that receptor kinase endocytosis is essential for proper stomatal patterning. Congrats, Pengfei, @edwardmarcotte.bsky.social, @hhmi-science.bsky.social, @texasscience.bsky.social & co-authors! www.science.org/doi/10.1126/...
science.org
Comparative proteomic profiling of receptor kinase signaling reveals key trafficking components enforcing plant stomatal development
Proteomic mapping uncovers endocytosis adaptors that drive receptor internalization for robust stomatal development.
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Marco Trujillo @trujillolab.bsky.social · 24/03/2026
Interesting paper on the degradation of DELLAS (gibberellin pathway) by a plasma membrane localized E3 ubiquitin ligase to regulate growth under C/N imbalance #proteostasis academic.oup.com/plcell/artic...
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MolPlantSci @molplantsci.bsky.social · 19/03/2026
And the This year’s winner of the Reinhold-von-Sengbusch prize for best Talk are: - Susanne Mühlbauer - LMU Munich - Jakob Weber Böhlen - RWTH Aachen University - Jan Multhoff – University Münster #MBP2026
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MolPlantSci @molplantsci.bsky.social · 19/03/2026
And here are this year’s winners of the Reinhold-von-Sengbusch prize for best Poster are: - Gali Araguirang - University Hamburg - Sophie Farkas - University Freiburg - Nazanin Mahouram Mashhadi - University Berlin #MBP2026
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MolPlantSci @molplantsci.bsky.social · 19/03/2026
The Plant Journal Award 2026 goes to - Josephine Herbst - MLU Halle #MBP2026
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MolPlantSci @molplantsci.bsky.social · 19/03/2026
The Agrisera Talk Award 2026 goes to - Johanna E. M. Dickmann - ENS de Lyon #MBP2026
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 18/03/2026
Congratulations! 👏 Marco @trujillolab.bsky.social receives this year‘s #SciComm Award of our @molplantsci.bsky.social for his long-term, consistent + clear presentation in social media. Read more about the award and his tips for #ECRs www.pflanzen-molekularbiologie.de/en/sci-comm#... #MBP2026
pflanzen-molekularbiologie.de
Our SciComm Award for excellent science communication
Our SciComm Award and other news from science communication
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Carolin Delker @carolindelker.bsky.social · 17/03/2026
@putriningrum.bsky.social presenting her work on GA at #MBP2026
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Ghent Rooting-lab/Steffen Vanneste @stvanneste.bsky.social · 13/03/2026
#Ligand-binding site predictor 😎 www.nature.com/articles/s41...
nature.com
AF2BIND: predicting small-molecule binding sites using the pair representation of AlphaFold2 - Nature Methods
AF2BIND is a logistic regression model trained on AlphaFold2 pair features to predict small-molecule binding-site residues in proteins, without multiple sequence alignments, homology models or knowled...
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Laura Ragni @lauraragni.bsky.social · 09/03/2026
🚨 PhD Position in Plant Molecular Biology 🌱 We are looking for a motivated PhD student to join our team to study root protective barriers. If you are interested in confocal microscopy, cell wall biology, and plant development, this project might be for you! Please share! #PlantScience #PlantSciJob
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Sascha Laubinger @saschalaubinger.bsky.social · 04/03/2026
Excited to share our latest preprint. Arabidopsis thaliana has been the leading model for plant genetics - but most of what we know comes from growth chambers. Can this model also help us understand how climate shapes plants in the wild and reveal gene functions under real environmental variability?
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The Arabidopsis Information Resource (TAIR) @tairnews.bsky.social · 19/02/2026
🎉📣 #TAIR12, the latest reannotation of the Arabidopsis thaliana genome, is now available under accession number PRJEB100887 on ENA and NCBI! Thank you all the volunteer researchers whose hard work has made this possible! #plantscience #plantbiology 🧪 bit.ly/3ZHtneT
bit.ly
Announcing the publication of TAIR12: Consult the fully reannotated genome on the European Nucleotide Archive - Phoenix Bioinformatics
TAIR (The Arabidopsis Information Resource), together with our nonprofit host Phoenix Bioinformatics, is pleased to announce the public release of TAIR12
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Putri Prasetyaningrum @putriningrum.bsky.social · 17/02/2026
Welcome back (stronger), thalemine! @bar-plantbio.bsky.social
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Vinay Shukla @vinayshukla.bsky.social · 21/01/2026
PhD opportunity in the newly minted RO2T Respiration Group! Please share! Interested in root biology, oxygen dynamics, imaging & modelling? We’re recruiting a PhD student at the University of Nottingham. Deadline 15th February. jobs.nottingham.ac.uk/Vacancy.aspx... #plantscijobs #plantscience
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