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Ashley Alexander

@peachypotato.bsky.social
290 followers 324 following 11 posts

Postdoctoral researcher University of Zurich Kümmerli Lab Microbiology, ecology, and evolution

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Reposted by Ashley Alexander
Kayla Stoy @kaylastoy.bsky.social · 28/09/2026
New paper with my postdoc advisor @wcratcliff.bsky.social. I love his creativity in putting together this video to summarize the work. Happy we had the chance to collaborate with each other!
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Will Ratcliff @wcratcliff.bsky.social · 28/09/2026
New paper out with @kaylastoy.bsky.social: academic.oup.com/evlett/advan...
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Will Ratcliff @wcratcliff.bsky.social · 15/09/2026
1/17 Submissions are now open for the 2027 Microbial Population Biology GRC! We expect this meeting to be extraordinarily oversubscribed. If you want to come, time is of the essence--apply ASAP! June 27–July 2 • Andover, NH www.grc.org/microbial-po...
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Dr. Michael D. L. Johnson @copperbae.bsky.social · 15/09/2026
vot-er.org/act/
vot-er.org
Get Vote Ready - Vot-ER
Are you ready to vote? Register, check your voter registration, request a mail-in ballot, and find out what’s on your ballot. The decisions we make in the upcoming election will impact our health for ...
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Graham Coop @gcbias.bsky.social · 10/09/2026
I’m looking to hire an NIH funded postdoc to join our lab here at Davis (please RT). Ongoing areas of interest include: 1) polygenic signals of selection from time series, ARGs, GWAS, etc 2) The interpretation of GWAS, polygenic scores, & sources of confounding
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 09/09/2026
🔔 New preprint from our lab: how does the chemical composition of infection-like environments shape how costly (or not) antibiotic resistance mutations are? We find that efflux pump regulator mutants can have a selective advantage in synthetic human urine + identify likely component driving this.
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Patrick R. Secor @prsecor.bsky.social · 02/09/2026
This job ad is now live! Please share or apply here: jobs.montana.edu/postings/52780 Screening of applicants begins Sept 15, 2026 #MicroSky #PhageSky #ScienceJobs
jobs.montana.edu
Postdoctoral Researcher - Lyme Disease Bacteriophage Biology
The Secor Lab seeks a postdoctoral researcher to investigate bacteriophage biology in the Lyme disease spirochete Borrelia burgdorferi. The successful candidate will help define how phiBB-1 controls h...
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George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 30/08/2026
Pls share: We have a new position for an Assistant Professor of Evolutionary Biology at UNLV. tinyurl.com/4uhpav4j
tinyurl.com
Assistant Professor in Evolutionary Biology, School of Life Sciences [R0153361]
The University of Nevada, Las Vegas (UNLV) appreciates your interest in employment. We ask that you keep in mind the following when completing your application: Once you start the application process ...
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FT @fucktheory.bsky.social · 25/08/2026
Imagine being talented and beautiful and rich and famous and still the most noteworthy thing about you is how good a person you are.
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Prof Dynarski @dynarski.bsky.social · 26/08/2026
23% drop in student visas to US in 2025 57% drop from India alone catastrophic for research and learning, here and abroad www.insidehighered.com/news/global/...
Graph of visas issued to students per month in 2024 and 2025
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Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A Zenodo repository collecting all problematic images: doi.org/10.5281/zeno... 3/🧵
doi.org
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Library of Congress @librarycongress.bsky.social · 25/08/2026
The Library is devastated to learn of the passing of Dolly Parton, a music legend and titan of children's literacy. Her Imagination Library program has earned multiple Library Literacy Awards and, in 2018, she visited us to donate its 100 millionth book to our collection and host a story time. 🦋❤️
Dolly Parton reads to children in the Library’s Great Hall in 2018. Photo by Shawn Miller.
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Lena Flörl (she/her) @lenafloerl.bsky.social · 27/07/2026
Our review on how microbes contribute to the 'taste of place' in wine is the current Editor's pick in Applied and Environmental Microbiology #AEM of @asm.org! 🍇🤩 Check out the latest on microbial terroir: doi.org/10.1128/aem.... #microbialterroir #microbiomes #review #MicroSky #MicrobiologyMonday
doi.org
Microbial terroir in winegrowing: revisiting the role of microbial biogeography in terroir expression | Applied and Environmental Microbiology
Terroir describes the link between a product’s distinct characteristics and its geographic origin and has been a central principle in viticulture for centuries. Traditionally, terroir is understood to be influenced by both environmental and human factors, including soil characteristics, local climate, topography, viticultural practices, and regional choice of grapevine cultivar. This is reflected in regulations like protected denomination of origins (PDO), which are strictly defined over features such as distinct climatic conditions and geology, authorized cultivars, and often traditional management practices (1).
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Jase Gehring @skyjase.bsky.social · 19/08/2026
"Bunsen burners are just vibing aseptic technique" yes. and the vibes are immaculate. the vibes are literally fire. this study changes nothing
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Marianne Alleyne @cotesia.bsky.social · 15/08/2026
My Department at the University of Illinois at Urbana-Champaign invites applications from entomologists with research portfolios in which INSECT BIODIVERSITY LOSS is a key element (at the assistant professor level). illinois.csod.com/ux/ats/caree...
Picture of a green tree-lined quad at the University of Illinois Urbana Champaign, with Foellinger Hall in the background. Skies are often this blue.
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Sheyda Azimi @sazimi.bsky.social · 13/08/2026
New preprint of our work on effects of intra-strain diversity of Pseudomonas on modulating host response is out! Some variants of concern, flip the switch in host responses! www.biorxiv.org/content/10.6...
biorxiv.org
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Rebekah Rogers @evolscientist.bsky.social · 04/08/2026
Officially recruiting postdocs at GW. If you are interested in genetic novelty, structural variation, or evo genetics please get in touch! We have data sets on mulitple organisms with large population sizes (Drosophila, Megalonaias nervosa) and species in decline (fireflies, mussels, elephants).
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Carolyn Ibberson @cbibberson.bsky.social · 22/07/2026
My first PhD student, @aanuoluwaduro.bsky.social graduated recently! Aanuoluwa is an excellent scientist and student, who has published some awesome work in @asm.org journals #msystems #iai doi.org/10.1128/msys... & doi.org/10.1128/iai..... I now want to highlight her most recent published work!
doi.org
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Staph papers @staph-papers.bsky.social · 19/07/2026
Staphylococcus aureus strain heterogeneity modulates virulence traits associated to dual-species biofilms with Candida albicans
t.co
Staphylococcus aureus strain heterogeneity modulates virulence traits associated to dual-species biofilms with Candida albicans - PubMed
Staphylococcus aureus is a commensal Gram-positive bacterium and opportunistic pathogen that exhibits substantial variation in antimicrobial resistance and virulence traits. S. aureus is frequently co-isolated...
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Ashley Alexander @peachypotato.bsky.social · 06/07/2026
Hot off the presses! S. aureus populations hold a surprising amount of diversity that can be observed by selecting a handful of colonies from a clinical sample. @huiqiloo.bsky.social @vishnu-raghuram.bsky.social @timothyread.bsky.social doi.org/10.1128/spec...
doi.org
Intraspecific diversity of Staphylococcus aureus populations isolated from cystic fibrosis respiratory infections | Microbiology Spectrum
When obtaining bacterial isolates from infections, it is important to consider the ecological biases introduced by methods used for collection and processing. In this study, we demonstrate how reducti...
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 11/06/2026
Reminder — UW #Microbiology has an open search for an Assistant Professor, focusing on fundamental problems in #bacteriology! If you or someone you know would be suitable, here's the ad: apply.interfolio.com/185622
Screenshot of the job listing linked in full above
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Retraction Watch @retractionwatch.com · 04/06/2026
A toxicology journal has retracted a 16-year-old study linking hepatitis B vaccines to autism in children following an independent statistical review that found a half-dozen concerns with the study’s methodology.
retractionwatch.com
Journal retracts study linking hepatitis vaccine to autism that was included in CDC review
A toxicology journal has retracted a 16-year-old study linking hepatitis B vaccines to autism in children following an independent statistical review that found a half-dozen concerns with the study…
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Vaughn Cooper @vscooper.micropopbio.org · 28/05/2026
In celebration of good friends and collaborators Erin Gloag @sirmicrobe.bsky.social, Dan Wozniak and @nanamikubota.bsky.social, here's a cool new study about rapid P. aeruginosa adaptation in wounds, with some hidden phage phun as bonus. journals.asm.org/doi/10.1128/...
journals.asm.org
Pseudomonas aeruginosa biofilm-deficient mutants undergo parallel evolution during chronic infection | Journal of Bacteriology
We demonstrate that in a porcine full-thickness thermal injury wound model, a Pseudomonas aeruginosa mutant deficient in biofilm formation undergoes adaptive evolution by acquiring mutations that alter the outer membrane, either type IV pili (T4P) or lipopolysaccharide (LPS) mutations, that restores the deficient biofilm phenotype. We also observe a striking degree of mutational parallelism, at both the biosynthetic pathway and gene level, indicating the strong selective pressures experienced by these pathways during chronic wound infection.
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Lilian Caesar @liliancaesar.bsky.social · 02/06/2026
Conference season is here, and I'll be at #ASMicrobe! Come check out some of my latest results on the honey bee queen microbiome. I'd also love to chat about other ongoing projects on social bee multi-kingdom microbiomes, potential collaborations, or opportunities to join the Caesar Lab at OU : )
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Daria Van Tyne @dariavantyne.bsky.social · 02/06/2026
We submitted this proposal in January 2025 and it was finally funded! Grateful and excited to keep working to bring phage therapy out of the laboratory and into the clinic. @pghphageprogram.bsky.social www.medschool.pitt.edu/news/pitt-ce...
medschool.pitt.edu
Pitt Center Is Part of First NIH-Funded Coordinated Research Network for Phage Therapeutics | School of Medicine | University of Pittsburgh
The National Institute of Allergy and Infectious Diseases (NIAID) has awarded three new Centers for Accelerating Phage Therapy to Combat ESKAPE Pathogens (CAPT-CEP)—the first coordinated U.S. research...
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Katherine Xue @ksxue.bsky.social · 26/05/2026
Do you love amplicon sequencing? Do you want to sequence MORE amplicons, faster and at lower cost? Check out 💘CUPID-seq💘, a highly multiplexed library design that lets you sequence hundreds of amplicon samples (16S, 18S, and more!) on a single sequencing run! (1/n) 🧵 www.biorxiv.org/content/10.6...
The CUPID-seq logo, which consists of a heart formed from two strands of DNA that then combine to produce an arrow.
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Richard Lenski @relenski.bsky.social · 12/05/2026
I was just informed that you can receive a 20% discount using the code AMCLF20 at the publisher's website.
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Chise @sailorrooscout.bsky.social · 25/05/2026
GOOD NEWS! Researchers at Stanford University have developed a UNIVERSAL vaccine known as GLA-3M-052-LS+OVA, that protects against a wide range of respiratory viruses, bacteria AND even allergens. The vaccine is delivered intranasally AND provides broad protection in the lungs for several MONTHS.
ecoticias.com
Goodbye to seasonal viruses as we know them: the first universal vaccine against respiratory infections and allergies is now closer than ever
Scientists are getting closer to a universal nasal vaccine that could protect against respiratory viruses, bacteria and even allergies
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c0nc0rdance @c0nc0rdance.bsky.social · 25/05/2026
This definitely forbidden gummy is in fact a moth larva of genus Olona (possibly Olona zolotuhini). It's *normal* to want to know what flavor it is, but the answer, unfortunately is "pain". Most species in this family are covered in tiny stinging spines connected to poison glands. (📷: Janice Ang)
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Patrick S. Mitchell @psmitchej.bsky.social · 25/05/2026
Thrilled to announce that the Department of Microbiology at the University of Washington, School of Medicine is hiring at the Assistant Professor level (tenure-track)! The Pacific Northwest is an awesome place to live and do science 🧪🦠. Join us! apply.interfolio.com/185622 Applications due 8/1.
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Will Ratcliff @wcratcliff.bsky.social · 15/05/2026
1/35 New preprint! We show that obligate multicellularity removes fundamental population genetic barriers to multicellular adaptation. Even a brief unicellular phase can dramatically constrain the evolution of beneficial multicellular traits. www.biorxiv.org/content/10.6...
biorxiv.org
Obligate multicellularity circumvents population genetic barriers to collective-level adaptation
Complex multicellularity has evolved in just five lineages (animals, plants, brown algae, red algae, and fungi) and in each case, these organisms develop clonally and are obligately multicellular. While prior work has shown that clonal development plays a critical role in the evolution of complex multicellularity, none has disentangled this from the impact of obligate vs facultative multicellular life cycles. Here we use experimental evolution with engineered snowflake yeast ( Saccharomyces cerevisiae ) to directly test how life cycle structure affects multicellular adaptation. We created isogenic strains capable of switching between unicellular and clonal multicellular phases, then evolved populations for 192 days under obligately multicellular, facultatively multicellular, and obligately unicellular regimes. Obligately multicellular populations rapidly evolved larger size, primarily driven by a whole genome duplication, in all five replicates. Facultative populations showed dramatically constrained evolution, with tetraploidy evolving in only 2/10 facultative populations despite experiments demonstrating that it is strongly beneficial across the full life cycle. Mathematical modeling reveals the mechanistic basis for this constraint: facultative life cycles create establishment barriers through two population genetic effects. Group formation dramatically reduces the number of units of selection, making beneficial multicellular mutations vulnerable to drift. This asymmetry in population size between life cycle phases also allows cell-level selection to overpower group-level selection, eliminating mutations that provide group-level benefits but carry cell-level costs. These findings demonstrate that obligate multicellularity circumvents fundamental population genetic barriers to collective-level adaptation, helping explain why complex multicellularity has evolved exclusively in obligately multicellular lineages, and suggesting similar constraints may operate in other evolutionary transitions in individuality. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, DEB-1845363 Howard Hughes Medical Institute Gilliam Fellowship National Science Foundation Graduate Research Fellowship
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Christopher Hale @christopherjhale.bsky.social · 20/05/2026
An American leader who believes in science.
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Eli Mehlferber @emehlferber.bsky.social · 20/05/2026
Hey all! Happy to finally join everyone here on Bluesky, and also to share the culmination of my longest-running postdoc project, now on bioRxiv: “Apparent generalism in Pseudomonas aeruginosa is underpinned by convergent cryptic specialization.” www.biorxiv.org/content/10.6...
biorxiv.org
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Ellinor Alseth @ellinoralseth.bsky.social · 13/05/2026
When is an antiphage mechanism an evolved defence adaptation? This question has been on my mind for so long, because despite the field’s rapid progress there is currently no widely agreed framework in place to answer it. So @brownlab.bsky.social and I wrote this, and I'm happy to share the preprint!
ecoevorxiv.org
The bacterial immune system: identifying evolved defense adaptations
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Fabienne Benz @fabbenz.bsky.social · 12/05/2026
I’ve started my SNSF Ambizione Group Leader position at the University of Zurich 🧬 We will study plasmid evolution, plasmid interactions, and CRISPR-Cas systems to better understand antibiotic resistance spread. Very grateful to everyone who supported me along the way.
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Fiona J Whelan @whelanfj.bsky.social · 11/05/2026
📣 Whelan lab is hiring 📣 We are looking for an entry level technician to help us with our culturing and DNA sequencing prep of cystic fibrosis lung microbiome samples. Applications close 20 May 2026. www.jobs.manchester.ac.uk/Job/JobDetai...
jobs.manchester.ac.uk
Research Technician in Microbiology and Molecular Biology:Oxford Road
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Rolf Kümmerli @rkmicrobes.bsky.social · 05/05/2026
Our new primer article published in Microbiology @microbiologysociety.org for all those who want to benefit from a light entry into metallophore biology www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Microbial Primer: Bacterial metallophores – their role for metal homeostasis and social interactions
Metals are essential trace elements for almost all organisms including bacteria. Yet, metals are toxic at high concentrations, requiring fine-tuned regulatory mechanisms to steer metal homeostasis ins...
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Robert Petit @rpetit3.bsky.social · 30/04/2026
Howdy! Happy to announce that Bactopia v4 is finally out! 🥳 This release supports the latest from @seqera.io Nextflow v26 (strict syntax, static types, and records! oh my!) It also open's the doors to start doing some fun things with Bactopia. To learn more, check out: bactopia.io/blog/bactopi...
bactopia.io
Bactopia v4 Updates and Improvements | Bactopia
Learn about the new features and improvements in Bactopia version 4.
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Joshua Weitz @joshuasweitz.bsky.social · 01/05/2026
New opportunity for PhD fellowships at interface of ecology & evolution from the Simons Foundation. Application deadline June 30, 2026. My interpretation is that this applies to prospective PhD students & those accepted/not yet matriculated. Full details: www.simonsfoundation.org/grant/simons...
simonsfoundation.org
Simons Graduate Fellowships in Ecology and Evolution
The purpose of these awards is to provide support for students entering U.S.-based Ph.D. programs with a plan to perform research in ecology and evolution. While we will consider all projects in ecolo...
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Richard Lenski @relenski.bsky.social · 01/05/2026
The Barrick & Lenski Labs in Dept of Microbiology, Genetics, & Immunology at Michigan State Univ seek a Research Assistant II to manage their research operations and participate in projects related to microbial evolution and synthetic biology. See details below. careers.msu.edu/jobs/researc...
careers.msu.edu
Research Assistant II - East Lansing, Michigan, United States
Position Summary The Barrick and Lenski Labs in the Department of Microbiology, Genetics, & Immunology at Michigan State University are seeking a Research Assistant II to manage their research ope...
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Tami Lieberman @contaminatedsci.bsky.social · 22/04/2026
Interested in a *staff computational scientist* position? We are looking for an experienced computational biologist (ideally with microbiology experience) to support published packages while also driving new research. Pay range $73k-$111k w excellent benefits. careers.peopleclick.com/careerscp/cl...
careers.peopleclick.com
Computational Biology Program Scientist
MIT - Computational Biology Program Scientist - Cambridge MA 02139
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Ashley Alexander @peachypotato.bsky.social · 30/03/2026
podcasts.apple.com/ch/podcast/r...
podcasts.apple.com
Radiolab
Natural Sciences Podcast · Updated weekly · Radiolab is on a curiosity bender. We ask deep questions and use investigative journalism to get the answers. A given episode might whirl you through scienc...
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Jeremy Berg @jeremymberg.bsky.social · 16/03/2026
NSF Update through March 13, 2026 1/2
A line graph of the number of NSF awards in fiscal 2026 compared to fiscal years 2021-2025. The fiscal year 2026 is well below the other curves and increasing only very slowly.
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David Ho @davidho.bsky.social · 26/03/2026
I don't think people fully appreciate how apocalyptic things are for US science. I haven't had any new funding since 2024, but I'm still ok since typical grants are for three years. This means next year I will be completely out of funding and will have to fire everyone in the lab. It's not great.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 26/03/2026
Siderophore-producing Bacillus and free-living nematodes are associated with soil suppressiveness to banana root-knot nematodes in @natcomms.nature.com from Yuanmei Zuo, Chunxu Song with Stefan Geisen at @w-u-r.bsky.social, Jos Raaijmakers at @niooknaw.bsky.social www.nature.com/articles/s41...
nature.com
Siderophore-producing Bacillus and free-living nematodes are associated with soil suppressiveness to banana root-knot nematodes - Nature Communications
Continuous monoculture of banana can result in proliferation of parasitic nematodes. Here the authors show that in the long term, soil can become suppressive to disease and this is associated with enr...
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Sheyda Azimi @sazimi.bsky.social · 20/03/2026
Our work shows how different bacterial cell surface properties alter microbiogeography and social interactions! Fun collaboration with @digglelab.bsky.social
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Freya Harrison @friendlymicrobe.bsky.social · 19/03/2026
#MicroSky people, have you ever grown a Staph aureus biofilm that forms a crispy or hard exterior crust (not in urine)? My MBio student Izabela has, and we are not finding much literature on this.
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Gina Baucom @gbaucom.bsky.social · 08/03/2026
🌿 Postdoc opportunity in plant evolutionary ecology/genetics! My lab in the Dept. of Ecology & Evolutionary Biology at the University of Michigan is recruiting a postdoctoral researcher to start Fall 2026. We study plant adaptation, using weeds as model systems. #Postdoc #EcoEvo Pls RT!
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Stu West @stuwest.bsky.social · 04/03/2026
New paper showing that bacteria with more genes for cooperation can live in a broader range of habitats and that genes for cooperation are more more likely to be in the accessory genome www.pnas.org/doi/10.1073/... @lauriebelch.bsky.social
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