Sign in

Pat Taylor

@paddyktaylor.bsky.social
203 followers 176 following 46 posts

PhD in microbiology. Enjoys sketching and painting. Overall, a somewhat capable scientist, less so of an artist.

PostsRepliesMedia
Pat Taylor @paddyktaylor.bsky.social · 15h
Two Lactobacillaceae species synergize to inhibit Streptococcus mutans biofilm growth and colony viability. Beating Strep mutans at its own game to create a harsh environment? #microSky doi.org/10.1080/2000...
doi.org
Synergistic pairing of Lactobacillus helveticus Stellar Lh-170 and Lactiplantibacillus plantarum Stellar Lp-199 suppresses Streptococcus mutans and disrupts cariogenic biofilms
Streptococcus mutans exists within a biofilm ecosystem where neighboring microbes influence each other’s viability. Probiotic strains with complementary antagonistic properties may enhance suppres...
000
Pat Taylor @paddyktaylor.bsky.social · 16/09/2026
Salish Sea purple sea stars are genetically divergent from other populations along the Pacific coast based on SNP calling in whole genome sequencing data. doi.org/10.1093/evol... 🦑 #bioinformatics #evoSky #genomics
doi.org
Validate User
040
Pat Taylor @paddyktaylor.bsky.social · 08/09/2026
Streptococcus anginosus as an oncobacterium uses patho-epigenetic mechanisms via a chromatin remodeller to create a more favourable environment at the cost of immunosuppression and progression of gastric cancer in the host. doi.org/10.1016/j.ch... #cancerBiology #microSky #molecularBiology
doi.org
Redirecting
000
Pat Taylor @paddyktaylor.bsky.social · 06/09/2026
ntSynt-vis, a robust tool for visualizing synteny analyses in genomes. doi.org/10.1093/jeb/... #bioinformatics #genomics
doi.org
ntSynt-viz: Visualizing synteny patterns across multiple genomes
Abstract. With the explosion of chromosome-scale genome assemblies being generated in recent years, there is vast potential for comparative genomics analys
010
Pat Taylor @paddyktaylor.bsky.social · 26/08/2026
Genomic sequencing of ancient DNA supports Streptococcus mutans present in the oral microbiome before agriculture. Radiation of clades appears to have occurred with development of farming. doi.org/10.1186/s130... #archaeology #microbiomeSky #microSky #paleomicrobiology
doi.org
Client Challenge
052
Pat Taylor @paddyktaylor.bsky.social · 24/08/2026
Distinct biofilm dynamics and adaptative trajectories for each species observed in three-species cultures of Klebsiella and Pseudomonas. doi.org/10.1093/isme... #biofilm #microbiology #microSky
doi.org
Mixed-species interactions constrain diversification and shape biofilm evolution
Abstract. Experimental evolution provides a powerful framework for dissecting how ecological interactions shape adaptive trajectories. Here, we evolved Kle
000
Pat Taylor @paddyktaylor.bsky.social · 22/08/2026
Archaeological illustrations for @cultarchaeo.bsky.social 's research is something I've been up to after 2 weeks gathering data and artifacts. Steph is beginning analysis and there's still tons of cool stuff to illustrate. Here's a plate sherd just for starters. #archaeology #historicalArchaeology
A digital illustration of a plate sherd found on site near a cabinA photo of the plate sherd displayed on my desk
030
Pat Taylor @paddyktaylor.bsky.social · 19/08/2026
I recently had the chance to poke around in a small remote bay for six-rayed sea stars, Leptasterias species (L. hexactis?). Very curiously, I could only find ones with a max of 5 arms! #ecology #evolution #marinelife
000
Pat Taylor @paddyktaylor.bsky.social · 19/08/2026
Terry Fox documentary premiering at TIFF one day before the 46th annual Terry Fox Run, Sept 19. It's using original footage from the Marathon of Hope recently recovered. www.cbc.ca/news/enterta...
cbc.ca
Watch the new trailer for upcoming Terry Fox documentary Run Terry Run | CBC News
The trailer for Run Terry Run, a new documentary about cancer research advocate Terry Fox featuring "never-before-seen" footage from his Marathon of Hope, was released today, one month ahead of its pr...
011
Reposted by Pat Taylor
BC Genome Sciences Centre @bcgsc.ca · 18/08/2026
🧬🖥️Joining us for the GSC Collaborator Forum on October 29, 2026? Consider applying to our third Sequence to Innovate Competition! Pitch your sequencing project in a 2-min rapid-fire talk for the chance to receive up to $15,000 CAD in sequencing support from the GSC. 🏆 🔗 tinyurl.com/S2Innovate
tinyurl.com
Sequence to Innovate Competition | Genome Sciences Centre
TERMS AND CONDITIONS         APPLY NOW
022
Pat Taylor @paddyktaylor.bsky.social · 18/08/2026
Distinct gene networks involved in low pH versus oxidative stress tolerance beyond canonical stress response pathways in Streptococcus mutans. doi.org/10.64898/202... #genomics #MicroSky #microbiome
000
Pat Taylor @paddyktaylor.bsky.social · 17/08/2026
Outer membrane vesicles have been one that I'm on the fence about. Are they the result of opportunity and probability for biological roles? Or specific mechanisms selected for? I found this review great as it dives into what's known of OMVs doi.org/10.1093/isme... #evolution #microbiome #microSky
doi.org
Socio-evolutionary role of bacterial membrane vesicles in cooperation and competition within microbial communities
Abstract. Microbial communities are shaped by social interactions that influence survival, resource access, and evolutionary trajectories. Most studies of
041
Pat Taylor @paddyktaylor.bsky.social · 17/08/2026
#OneHealth perspective in #ecology studies for added monitoring of #antimicrobialResistance occurrences in the wild. doi.org/10.1111/1758... #bioinformatics #genomics #microbiomeSky #microbiology #microSky
doi.org
Using Ongoing Wildlife Surveillance Programs to Monitor Antibiotic Resistant Bacteria in the Environment
Screening of ESBL-, pAmpC- and carbapenemase-producing Escherichia coli among Swedish wildlife demonstrated a low occurrence of antibiotic resistance in wild animals. Only two ESBL/pAmpC-producers we...
011
Pat Taylor @paddyktaylor.bsky.social · 17/08/2026
Streptococcus mutans susceptibility to zinc toxicity due in part to mechanism of glutathione zinc chelation and uptake mechanism. doi.org/10.1099/mic.... #microbiology #MicroSky
doi.org
Zinc tolerance through glutathione import strikes a fine balance between protection and damage in Streptococcus mutans
Recently, our group showed that the dental pathogen Streptococcus mutans is inherently more tolerant to high zinc stress than other streptococci, a phenotype associated with the presence of a P-type A...
010
Pat Taylor @paddyktaylor.bsky.social · 01/06/2026
Costly proposed routes, no plan for environmental impact, no plan for impact on other industries, no plan for working with Indigenous communities, no investors lined up. This insistence on a westward Alberta pipeline is half-baked and in bad faith. #AlbertaPipeline #bcpoli www.cbc.ca/news/canada/...
cbc.ca
Where will Alberta's oil pipeline go? Documents reveal possible B.C. routes | CBC News
The Alberta government has considered three different pipeline routes through northern British Columbia for a new major oil export pipeline, according to documents obtained by CBC News which provide a...
052
Reposted by Pat Taylor
Alicia Ault @aliciaault.bsky.social · 26/02/2026
Part of the NYT's "Lost Science" series. NativeBio was the first nonprofit data and sample repository for indigenous people; it lost $6 million of its $9 million federal funding suddenly. It's now seeking to replace that funding. #research #NativeAmerican #politics #genomics #publichealth
nytimes.com
He Built a Server to Protect Indigenous Health Data
041
Pat Taylor @paddyktaylor.bsky.social · 22/01/2026
Unique oral microbiota in those with obesity but open as to whether it is contributing to, or a result of. My bet would be it's a complicated feedback of both. #microbiomesky www.newscientist.com/article/2512...
newscientist.com
Our oral microbiome could hold the key to preventing obesity
A distinct set of microbes has been identified in people with obesity, which might help spot and treat the condition early – but whether it is a cause or effect of the condition isn’t known
010
Pat Taylor @paddyktaylor.bsky.social · 25/11/2025
Up and down the coast we're all looking to make waters safer for whales and all other marine life. Really great to hear about the people volunteering their space, time, and effort to monitor marine mammal activity. www.cbc.ca/news/canada/... #marineLife #ocean #westCoast #whales
cbc.ca
B.C. residents host whale detection devices on their properties in bid to protect animals | CBC News
From infrared thermal cameras to hydrophones, these B.C. residents offered up space on their properties as researchers look to help safeguard marine mammals.
120
Reposted by Pat Taylor
Joerg Overhage @joergoverhage.bsky.social · 27/03/2025
We are looking for a graduate student (MSc in Health Sciences) in microbiome research to study chronic wound infections. Join our interdisciplinary team at Carleton University, Ottawa.
233
Reposted by Pat Taylor
Zamin Iqbal @zaminiqbal.bsky.social · 09/04/2025
So glad this is finally out. The method has been instrumental in allowing us to compress the AllTheBacteria data - ~2 million bacterial genomes shrink from 3Terabytes (gzipped) to 100Gb using phylogenetic compression. Great work by @brinda.eu
412652
Pat Taylor @paddyktaylor.bsky.social · 25/07/2024
Bog iron of the sea? I'm putting a bet down that chemotrophs have a role in forming these near mineral rich seeps #geobiochemistry #microbiology www.cbc.ca/news/science...
cbc.ca
Researchers say oxygen is being produced on the ocean floor. The mining company funding them isn't happy | CBC News
The discovery of oxygen being produced on the ocean floor — apparently by ancient lumps of metal — has put the scientists behind the landmark study at odds with the Canada-based mining company that funded them.
040
Pat Taylor @paddyktaylor.bsky.social · 11/11/2023
Was just thinking on this again. I've found that's specifically trying to use #mamba through a script that causes problems. Specifically calling #conda works okay. 🧪🖥🧬🔬🌾
140
Pat Taylor @paddyktaylor.bsky.social · 11/11/2023
One of our cats had a visit to the vet recently. The doctor asked us to monitor their breathing to get an idea whether a heart murmur may be a problem. I took that "just check once a week" and turned it into full data collection and analysis. #cats #datascience #ggplot2 #scienceexperiment
A line graph of breaths per minute over the course of a couple weeks for all cats.A box plot of breaths per minute over the course of a couple weeks for all cats.A close up picture of Riled while he was dozing on Steph's lap.
020
Pat Taylor @paddyktaylor.bsky.social · 23/09/2023
Anybody else roll those dice by activating conda environments from within their bash script? Seems to have worked pretty well for me so far. Only failed today for the first time while running the tool bismark for methylation calls. 🧪 💻🧬 #bioinformatics #genomics
230
Pat Taylor @paddyktaylor.bsky.social · 21/09/2023
Woo hoo! Just like that, for the first time in my career, I've gone the whole distance from extraction to actually doing the NGS run myself. Wasn't so bad :S Now time to keep on going, time to do the analysis! Wee! 🧪🔬🌾 #agronomy #genomics
Photo of the screen on our MiSeq next-gen sequencer at the Applied Genomics Centre. The MiSeq is a blocky device about one metre cubed, very heavy, and it's casing is that rough or pebbly surfaced plastic. Its screen is about 15 inches and is a regular LCD touchscreen. It's displaying a little diagram of itself with a prompt reading "Run completed without errors."
040
Pat Taylor @paddyktaylor.bsky.social · 16/09/2023
"Plain good luck." Pretty much sums up why antibiotic resistance hasn't been an even more rampant problem. www.cbc.ca/news/health/...
000
Reposted by Pat Taylor
Dr. Lauren E. Fuess @laurenfuess.bsky.social · 30/08/2023
My reach here isn't great yet, so maybe people can help spread the word. We're hiring a postdoctoral scholar as part of an NSF planning grant to support a bioinformatics research center in global change ecology at TXST. Details here: fuesslab.wp.txstate.edu/opportunities/ Apply by 9/15!
fuesslab.wp.txstate.edu
opportunities – Symbiommunity Lab
14273
Reposted by Pat Taylor
James Marsh @jmarsh.bsky.social · 30/08/2023
Hey microbiome people, here's yet another feed to add to the list: MicrobiomeSky! At this stage anything with "microbiome" or #microbiome will be included. Enjoy! @markrubin.bsky.social
3108
Reposted by Pat Taylor
Phoebe Lostroh @profphoebe.bsky.social · 30/08/2023
Is there a feed for talking about justice and STEMM 🧪(diversity, inclusion, accessibility, access)?
133
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 28/08/2023
How big were the Aquarian Foundation's gun forts? Hard to know an average size, tbh, because they were built in many styles! This stone one I'm crouched inside was only about 1.5 m wide (inside), but there were 2 types of wood forts, & a possible dugout fort, for which we we have no sizes (yet 😉)🏺
Me in a grey baseball cap, green sweater, grey pants, and brown boots crouched down inside a circular structure built of stacked rocks. I have a yellow tape measure on the ground in front of me, which I am taking a photo of with my phone.I am still crouched inside the circular stone structure, only this is a photo of the back of my head taken from outside of the structure
131
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 26/08/2023
I've just learned my article was included in an upcoming OER archaeology 🏺 textbook chapter about pseudoarch (written by someone who I've learned a lot from over the years)! Very cool 😊 Fun fact: this article was labeled as "controversial" in the archaeology subreddit 😅
0152
Reposted by Pat Taylor
Cameron Thrash @jcamthrash.bsky.social · 23/08/2023
Huge win! Cultivation of marine bacteria of the SAR202 clade www.nature.com/articles/s41... #jcampubs
nature.com
Cultivation of marine bacteria of the SAR202 clade - Nature Communications
Bacteria of the SAR202 clade are ubiquitously distributed in the ocean, but their biology is poorly understood due to the lack of cultivated isolates. Here, Lim et al. report the cultivation of marine...
095
Reposted by Pat Taylor
Sebastian S. Cocioba @atinygreencell.bsky.social · 26/08/2023
Alright, Vibrio natriegens S72 cells are spiked and system is running. Collecting 940nm optical density readings every second. Let's see if I can catch that diauxic shift between mannitol and sorbitol. Should look similar to the curve below from E. coli K-12 🤞
0102
Reposted by Pat Taylor
Bloomberg News @bloomberg.com · 25/08/2023
EXCLUSIVE: The failed SpaceX launch left acres of damage that had US wildlife officials and biologists in disbelief, documents seen by Bloomberg show
bloomberg.com
SpaceX Blast Left Officials in Disbelief Over Environmental Damage
Fish and Wildlife Service biologists expressed frustrations in emails obtained by Bloomberg.
231053612
Pat Taylor @paddyktaylor.bsky.social · 25/08/2023
Broad question to the agronomy, bioinformatics, microbiology communities, has anyone previously attended the Plant and Animal Genomics Conferences? Is there much microbial genomics representation within any sessions? Interested in attending PAG31 and curious about what microbio might be there. 🧪🌾🔬
133
Reposted by Pat Taylor
Loukas Theodosiou @bioinformatician.bsky.social · 24/08/2023
Dear blskyers, In collaboration with Kristian Ullrich, I'd like to present SNPless, a Nextflow pipeline developed for time series analysis of microbial genomics data 🧬. github.com/kullrich/snp...
1219
Reposted by Pat Taylor
Richard Sever @richardsever.bsky.social · 23/08/2023
The cavalry arrives @biorxiv-evobio.bsky.social @biorxiv-neursci.bsky.social @biorxiv-biophys.bsky.social @biorxiv-genetic.bsky.social @biorxiv-cancer.bsky.social @biorxiv-cellbio.bsky.social @biorxiv-ecology.bsky.social @biorxiv-microbiol.bsky.social
8225170
Pat Taylor @paddyktaylor.bsky.social · 22/08/2023
Just watched They Cloned Tyrone and that is a great movie! Anyone looking for some sci-fi at its best when making commentary on our world should watch it.
010
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 21/08/2023
Lots of new folks here (welcome!), so it's time for a re-introduction! I'm a historic and contemporary archaeologist. My research explores the archaeology of conspirituality, as well as the use of archaeology and pseudoarchaeology by North American far-right individuals/groups 🏺
1267
Pat Taylor @paddyktaylor.bsky.social · 20/08/2023
After a great day getting to be @cultarchaeo.bsky.social's assistant I'm still thinking about how almost 100 years ago there was a cult near by that started with a message of self improvement and bettering each other and descending into hate and paranoia.
A photo of a sign post on a hiking trail in the forest on DeCourcy Island. It reads "BROTHER XII TR." The sign is carved from wood and is simply nailed to a wood post in the ground. The lettering is carved about 0.5 cm deep and letters are about 5 cm in height. The sign is about 50 cm wide in total. The post it's nailed to is about 15 cm square and stands about 180 cm high. The sign is painted brown and the lettering white using a weather resistant outdoor paint. The paint is beginning to peel giving portions of the sign feeling smooth in texture with folds of bumpy peeling paint and rough wood grain in others. The brown paint was warm to the touch due to it being in the summer sun and the dark colour soaking up the heat.
141
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 19/08/2023
Since getting onto DeCourcy, @paddyktaylor.bsky.social and I spent a few hours wandering around Brother XII's gunforts. Up next is the community gathering at the firehall!
Circular formation of large stacked rocks, many covered in moss, sitting on a bedrock ridge in a treed forest
011
Pat Taylor @paddyktaylor.bsky.social · 11/08/2023
Ooh neat, I just discovered the Micro Binfie Podcast! Absolutely going to make this a regular one to listen to. microbinfie.github.io/pages/open_ar… 🧪
microbinfie.github.io
Open Art - MicroBinfie Podcast
This is the website for the MicroBinfie Podcast, a discussion about the intersection between bioinformatics and public health.
011
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 02/08/2023
Got hotel + ferries (eventually have to add water taxi too) booked for a short Brother XII field visit in a few weeks, the cost of which, for 2 days only, immediately made me think about how much research is not done because there is not enough funding available 😟
031
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 29/07/2023
Mega disappointed to see that the Society for Anthropological Sciences reviewed and approved a TERF session at the upcoming AAA/CASCA conference. I don't accept that they may not have recognized dog whistles in the abstracts because half the language isn't coded at all. Big yikes all around!
42310
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 30/07/2023
Enroute home after a few weeks of excellent fieldwork, but @paddyktaylor.bsky.social and I are stopped for the night to do a bit of camping in Jasper National Park! Provided the bears don't push us out like last time. . .
Looking down a low level river, mountains and forest in the background against a bright blue skyInside the tent looking out at the cloudy blue sky and green trees
091
Reposted by Pat Taylor
Steph Halmhofer @cultarchaeo.bsky.social · 26/07/2023
Last summer @somag.bsky.social and I were in the field together watching Spriggan, and this summer we're in the field together sharing the first of three pieces we've written about the manga and anime for WWAC! tinyurl.com/mud4bx56
womenwriteaboutcomics.com
COMICS ACADEME: Spriggan: A Fun, Action-Packed Mix of Archaeology, Aliens, and International Politic...
References from pseudoarchaeology and conspiracy theories are central in Spriggan. Through these, themes such as militarization, foreign politics, and climate change are explored. In Part One of this ...
134
Pat Taylor @paddyktaylor.bsky.social · 26/07/2023
Ooh, visiting Eastend, Saskatchewan and the highlight for me is these incredibly well restored F-units sitting right here in town. There's three, *three* of them! And a booster assist! And a ton of stock!
Photos of 3 locomotives, a booster (effectively another locomotive which couples to another locomotive to provide more power to haul longer trains), and a photo of multiple passenger cars. All sitting on rails, on two separate spurs and assembled in two trains.Photos of 3 locomotives, a booster (effectively another locomotive which couples to another locomotive to provide more power to haul longer trains), and a photo of multiple passenger cars. All sitting on rails, on two separate spurs and assembled in two trains.Photos of 3 locomotives, a booster (effectively another locomotive which couples to another locomotive to provide more power to haul longer trains), and a photo of multiple passenger cars. All sitting on rails, on two separate spurs and assembled in two trains.Photos of 3 locomotives, a booster (effectively another locomotive which couples to another locomotive to provide more power to haul longer trains), and a photo of multiple passenger cars. All sitting on rails, on two separate spurs and assembled in two trains.
041
Reposted by Pat Taylor
Elisabeth Bik @elisabethbik.bsky.social · 25/07/2023
Hello BlueSky! This is Elisabeth Bik, known as MicrobiomDigest on the late bird app. I have a PhD in microbiology, and I work full-time on finding image and other problems in scientific papers. www.nytimes.com/interactive/2022/10…
Elisabeth Bik in her home office. Amy Osborne/Agence France-Presse — Getty Images

https://www.nytimes.com/interactive/2022/10/29/opinion/science-fraud-image-manipulation-photoshop.html?unlocked_article_code=hpt5ELi0UmSS2MoT5r7ybYSlhiMZBE24dfqMpakRXC_mTatH6LJ2vEZmj8KIrEORhF3KPwBZ6TaXkTu8rWJwgeMW1XSZvTglQFea2VUwLJBBuasFCvw2Agxl-fPp0KV-_YQKjQJCIymTa36xdHIJKD_1IHTQP2HJEfx8hDHOmo4k5skMT-G5Gw1x4DcyOK0JlJIP4csNyvatH2N7rTwf5LiDWr1gvuk1_AgTrmu2pMVQD9JVe9lQsGS_U4VRfg1IDtN7ZTpzBiYBANeeHTfGFeVC6yx0v0Eptwsew-HM-uY8Q4_tDfWQQtpkqxIpre1ITR69Rvzi8Owz26DfxaideclYmp_VSHZ2HS9xS3errelbivF2EIPgwbQAwXjfR_4UwyCUPQ&smid=url-share
1615134
Pat Taylor @paddyktaylor.bsky.social · 25/07/2023
Here in Eastend, Saskatchewan it is incredible learning about all the 🧪 science and discovery that has happened here. Today was about Jack Wilkinson who began building telescopes from scratch and pursuing astronomy as a hobby. He eventually built the town's observatory that's still here to this day.
Historical photos of Jack Wilkinson and the telescopes and associated components that he built.Historical photos of Jack Wilkinson and the telescopes and associated components that he built.Historical photos of Jack Wilkinson and the telescopes and associated components that he built.Historical photos of Jack Wilkinson and the telescopes and associated components that he built.
041