Rapid & standardized genome annotation using protein structural information - gbouras13/baktfold

Latest AlphaFold Database update adds high-value datasets for microbial and viral proteins, generated by specialist communities

This is the twelfth minor release (v1.12) providing more than 10 minor improvements and many bug fixes improving runtime stability, IO compatibility, and last but not least user experience. Compati...

Bacteriophage (phage) genome annotation is essential for understanding their functional potential and suitability for use as therapeutic agents. Here we introduce Phold, an annotation framework utilis...

The 'German Network for Bioinformatics Infrastructure – de.NBI' is a national, academic and non-profit infrastructure supported by the Federal Ministry of Education and Research providing bioinformati...

Abstract. The Bakta command line application is widely used and one of the most established tools for bacterial genome annotation. It balances comprehensiv

This is the eleventh minor release (v1.11) introducing database schema version 6. Compatible database scheme version: 6 Important From this release on, Bakta will use xz instead of gz for all data...

This data repository contains the mandatory DB for Bakta. It is available in two versions: the default (db.tar.gz or) and a lightweight alternative (db-light.tar.gz). Bakta is a tool for the rapid & s...

Public databases for molecular typing and microbial genome diversity

This is the first v1.10 patch release (v1.10.1). Improvements Improved handling of draft genome in circular plots: 0118983 Added N90 to genome statistics: 7abfa9a Fixes Fixed changed Micromamba ...

This is the tenth minor release (v1.10) introducing user-provided HMMs, output file recovery, feature inference scores, and various improvements. Compatible database scheme version: 5 Important Si...

Commandline tool to (batch) download bakrep datasets - ag-computational-bio/bakrep-cli