Sign in

naturepoker

@binomicalabs.org
3K followers 1.8K following 2.3K posts

Binomica Labs independent researcher by day, warehouse worker by night Small thoughtful science #phylogenetics #archaea #evolution #bioinformatics #phage @naturepoker@genomic.social naturepoker.wordpress.com orcid.org/0000-0002-6977-5440

PostsRepliesMedia
naturepoker @binomicalabs.org · 29/09/2026
Autumn rain's finally let up a bit. #nyc
010
naturepoker @binomicalabs.org · 28/09/2026
Are we really surprised? Also, I've been seeing a lot of academic labs with new Claude science subscriptions/gifts. Something to think about. 🧪
021
naturepoker @binomicalabs.org · 26/09/2026
Yeesh, is the upcoming noreaster storm going to be that bad for #nyc? Just got a message starting with "For you and your family's safety, now is the last chance...." I need to go grocery shopping after work this morning lol.
021
Reposted by naturepoker
Ben Collins @bencollins.bsky.social · 25/09/2026
lol holy shit I wouldn't talk about literally anything else if I was the guy running against him. —"What do you think about trans kids in sp-" —"Did you hear my opponent had his patient, who was 8 months pregnant, arrested in front of her son because she didn't pay a $50 medical bill?"
8189102556
naturepoker @binomicalabs.org · 25/09/2026
Got the full autumn experience last night, hanging out with old buddies & cheap beer at a makeshift rooftop theater. Sunset boulevard on 35mm celluloid is an interesting experience considering the venue lol. Not sure how they managed to swing that one.
000
Reposted by naturepoker
Al Yankovic @alyankovic.bsky.social · 25/09/2026
popsci.com
Asteroid named after ‘Weird Al’ Yankovic
‘I just hope this isn’t the asteroid that winds up destroying the Earth.’
1584408662
naturepoker @binomicalabs.org · 23/09/2026
I gotta tell ya. Just adding two frozen dumplings into an instant cup ramyun really changes the QoL feel of the whole thing.
050
Reposted by naturepoker
John Lovell @jotlovell.bsky.social · 19/05/2026
We are often asked whether pangenomes are worth the hassle. The files can be large and methods to explore them are much more challenging than linear references. Earlier this week, we preprinted a clear example of how and why pan-genome graphs are so important for trait discovery.
13423
Reposted by naturepoker
Brian D. Wade @astrobrian.bsky.social · 22/09/2026
A Hadean timeline for the emergence of the RNA World #OriginsOfLife #RNAworld #RNA #scienceSky www.nature.com/articles/s41...
nature.com
A Hadean timeline for the emergence of the RNA World - Nature Communications
A 3-D thermal model identifies a ~ 4.33 Ga temporal “sweet spot” for life’s origin, when decreased bombardment enabled mild hydrothermal niches to support RNA World chemistry and stable biomolecu...
062
Reposted by naturepoker
STCmicrobeblog @stcmicrobeblog.bsky.social · 22/09/2026
thx for pointing this out, rich 🙏 (first, however,cwe will take another look at 📖 pmc.ncbi.nlm.nih.gov/articles/PMC...) #MicroSky and all other branches of biology
https://pmc.ncbi.nlm.nih.gov/articles/PMC2650883/
031
Reposted by naturepoker
Kristina Killgrove @killgrove.bsky.social · 22/09/2026
The newly discovered cuneiform tablet fragment contains text from a section of the Treaty of Kadesh related to the treatment of Hittite and Egyptian refugees in the Bronze Age (circa 1269 BC). 🧪🏺
livescience.com
'We have found traces of peace, thousands of years old': Fragment of world's oldest known peace treaty found in Turkey
Archaeologists excavating in the ancient Hittite capital of Hattusha have uncovered a fragment of the world's oldest peace treaty, signed around 1269 B.C.
111068325
naturepoker @binomicalabs.org · 22/09/2026
Beautifully cool autumn weather in #nyc these past couple of days. We'll see the leaves gain their colors in a couple of weeks, I think. Can't believe the summer's gone already. The calendar in my head's still stuck in 2025
000
naturepoker @binomicalabs.org · 21/09/2026
These silicon valley LLM companies are not being run by pipefitters from community colleges. Most if not all slop publication houses are run by phds. Chances are, all fraudulent, scam and slop papers you'll ever read will come from people who had postgrad education. They're always one of you.
120
Reposted by naturepoker
garin | comms open @garin.bsky.social · 02/07/2026
Hello!! 👋 I'm Garin, a freelance artist and currently I'm looking for work and open for commissions! I can do concepts, sequential art, illustrations and any 2D assets that can be used for your project! Feel free to hit me up anytime! 📩Contact: garincomms@gmail_com 👩‍🎨Portfolio: garin-art.carrd.co
14814254
Reposted by naturepoker
David Lowry @davidlowry.bsky.social · 19/09/2026
A widespread power outage is currently affecting the Michigan State University campus. Many science buildings are reportedly without power, and freezers and fridges are warming up. #MSU
3109
Reposted by naturepoker
Nicholas Grossman @nicholasgrossman.bsky.social · 19/09/2026
AI didn’t “go rogue.” People connected a computer system they know can mess with another computer system in unpredictable ways to less advanced computer system and it messed with that computer system in unpredicted ways. As @tressiemcphd.bsky.social argues, don’t lose sight that *people* did that.
nytimes.com
Opinion | Panic Won’t Fix the Looming A.I. Threat. Politics Will.
The threats from A.I. are real — and they’re ones we know how to deal with.
251169310
Reposted by naturepoker
gamera obscura @ohrobin.bsky.social · 19/09/2026
incredibly well-done resident evil teaser from a movie theater
80168975708
Reposted by naturepoker
STCmicrobeblog @stcmicrobeblog.bsky.social · 18/09/2026
the "Mg²⁺ problem" has been known for a long time. For example, in the standard "rich medium" LB (see👇). now we get to know more about the reasons! #MicroSky
smallthingsconsidered.blog
The Lim­i­ta­tions of LB Medium
by Hiroshi Nikaido — LB medium, also known incorrectly as Luria-Bertani medium, is widely used to grow bacterial cultures, mainly because it is easy to prepare and provides a broad base of nutrien…
15515
naturepoker @binomicalabs.org · 19/09/2026
Setting up #guile within #android #termux environment. Guile 3.0.11 is in termux pkg, and guile-colorized install via cloning the repo, running: mkdir -p "$(guile -c '(display (car %load-path))')/ice-9" Then make install. Add necessary lines to .guile & we have first class repl on arm android
041
Reposted by naturepoker
Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 15/09/2026
The first written piece of our telomere work. More to come~
052
naturepoker @binomicalabs.org · 14/09/2026
I had some issues running this one with snap version of chromium on Ubuntu - potentially because it's sandboxed without requisite libraries? Flatpak version fares a lot better, but you need to go to chrome://flags and enable vulkan, vulkan from angle, and vulkan angle use. 💻🧬
120
Reposted by naturepoker
Matt Bashton @mattbashton.bsky.social · 14/09/2026
Our latest work by my PhD student, Omar Darawsheh, who is part of a BiSCoP BBSRC funded studentship with P&G, has now been published in Bioinformatics Advances.
031
naturepoker @binomicalabs.org · 14/09/2026
Something from 🦣. Looks like #linux #Zoom client calls home with captured system x11 clipboard content. If you have api keys or passwords on clipboard, this could be a big problem. Apparently Slack client does it too? It can be turned off in config.
010
Reposted by naturepoker
Lech Karpiński @ceramb.bsky.social · 03/08/2026
Most likely the first Polish-Mongolian-Spanish🇵🇱🇲🇳🇪🇦 entomological expedition in history is underway! Scientists from @mizpas.bsky.social and the Mongolian Academy of Sciences are exploring the unique habitats of eastern and SE Mongolia 🏞 Research is focused on beetles and ants 🐜🪲
362
naturepoker @binomicalabs.org · 12/09/2026
Ahhhhhhh I have Blizzcon stream running in the background for Diablo news and it's way too cringe inducing. Not everything needs a stage announcement guys. Just give us a couple of stuff to get excited about, and the rest can be press release...
030
Reposted by naturepoker
Ronny Bergmann @ronnybergmann.net · 11/09/2026
OhMyREPL 0.6 is compatible now with Julia 1.13 (but no prior versions). It has the colorschemes! still from before – and loads again Monokai by default. There brackets and functions have the same color. But you can change that now. I have OhMyREPL back in my startup.jl and get
A Julia 1.13 REPL loading OhMyREPL in the startup so displaying and choosing color schemes works again.
111
naturepoker @binomicalabs.org · 11/09/2026
Many in US idealize young biotech startups. My experience being interviewed at a pretty well known US East sequencing co. was constantly having my blue collar job experience pointed out and being told "I'm a guy brought in to mow the lawn" there, so I need to shut up about bioinfo pipeliines 🫠 🧪
240
Reposted by naturepoker
Molly Schumer @mollyschumer.bsky.social · 11/09/2026
If anyone looking for a postdoc with fantastic genomics/bioinformatics skills + strong intellect + great energy, please let me know! Preferably West Coast or remote/hybrid options & the candidate is open to a short (1 year) or longer term appointment
23341
Reposted by naturepoker
Ellinor Alseth @ellinoralseth.bsky.social · 11/09/2026
What a Friday, finally seeing this published in @cp-trendsmicrobiol.bsky.social! We hope this will be of interest to anyone working in the bacterial immune system field (or microbiology in general), and who wants an evolutionary take on it 🦠🧫 Open Access link: authors.elsevier.com/a/1nllx,L%7E...
32815
naturepoker @binomicalabs.org · 11/09/2026
I think 1.13 syntax highlight system is intended as programmable interface, so there's a bit of additional work for people who just want repl highlights out of box. I can see there being a Julia module for syntax/repl styling collection in the future, which could be interesting. #julialang
110
naturepoker @binomicalabs.org · 10/09/2026
If you were using Julia for any production stuff I'd hold off on updating to 1.13 for now. Running into strange errors if my config/startup.jl contains references to OhMyREPL, and also running into bunch of precompilation errors in different environments I didn't see before update. #julialang
220
Reposted by naturepoker
Laura Ross @laurarossevo.bsky.social · 10/09/2026
My lab @ Edinburgh university is recruiting a postdoc to work on the weird and wonderful germline-specific chromosomes of flies. elxw.fa.em3.oraclecloud.com/hcmUI/Candid... collaboration with @germline.bsky.social and yukiko yamashita funded by @novonordisk.bsky.social please repost!
16665
naturepoker @binomicalabs.org · 10/09/2026
Power situation in the lab had been dicey lately - I think the already lackluster grid is overloaded by people sneaking in AC/coolers/ So every time checking nvtop on my workstation is a lot more thrilling than it should be. I won't be able to meet deadlines if another basecalling run cancels out.
011
naturepoker @binomicalabs.org · 10/09/2026
#Julialang Julia 1.13 is out. There's built in repl syntax highlight. How does it compare to OhMyREPL? Time to retire the latter? Also looks like juliaup ships with gui - I have mixed feelings about that one. Is anyone not using juliaup because of cli? julialang.org/blog/2026/09...
julialang.org
Julia 1.13 Highlights
Highlights of the Julia 1.13 release.
250
naturepoker @binomicalabs.org · 10/09/2026
Too real.
020
naturepoker @binomicalabs.org · 09/09/2026
Looks like CERN open sourced their kicad electronic components library. Kudos to them. gitlab.com/ohwr/cern-ki...
gitlab.com
Open Hardware Repository / CERN KiCad Libraries · GitLab
Component libraries used at CERN for electronics design using KiCad.
051
naturepoker @binomicalabs.org · 08/09/2026
Also it's been a while since I used a headless server distro installation - debian boots wicked fast. Cold boot from nothing to fully functional on network in seconds, if even that.
000
naturepoker @binomicalabs.org · 08/09/2026
Homespun subnet for my art studio-biolab is done. 14tb of hard-cable raid storage up and running on simple headless debian. Watching data travel at 500mb/s between machines is a wonderful thing. Now I have opinions about a new ethernet card for my workstation.
000
Reposted by naturepoker
STCmicrobeblog @stcmicrobeblog.bsky.social · 08/09/2026
#MicroSky
051
naturepoker @binomicalabs.org · 07/09/2026
Did anyone else see the new (apparently true) US space force uniform? It's the most impractical dress-up nonsense I've seen in a long time.
000
naturepoker @binomicalabs.org · 07/09/2026
Anyway, still running the whole thing on Debian for FOSS reasons. The humble artist studio lab has a new 14TB raid storage for the sequencing pod5s and other data. Also looking forward to trying out some guix shenanigans here.
000
naturepoker @binomicalabs.org · 07/09/2026
Spent the night on a crashcourse on nmcli and dnsmasq, all you need to spin up a quick subnet with ethernet connected NAS Big caveat - you can delete UGOS and boot with different distro, but you can't get firmware updates without it. And UGOS image is only available through their customer service.
000
naturepoker @binomicalabs.org · 07/09/2026
Cross posting from 🦣: AWS + nextflow tutorial from a practicing bioinformatics researcher. I love how straight to the point and practical it is. Too many technical posts these days have overlong preambles and take too long to get to the point. lpembleton.rbind.io/posts/the-20...
lpembleton.rbind.io
The 2026 AWS Nextflow Survival Guide – Luke Pembleton
An updated guide to setting up Nextflow on AWS Batch in 2026 without fusion
020
Reposted by naturepoker
Richard Sever @richardsever.bsky.social · 27/08/2026
$3.7 billion spent on APCs in 2025. That's ~1000X more than it costs to run bioRxiv/medRxiv. Worth thinking about as we consider how to fund infrastructure... arxiv.org/pdf/2608.16322
arxiv.org
813378
naturepoker @binomicalabs.org · 07/09/2026
This has got to be some sort of joke, right?
050
naturepoker @binomicalabs.org · 07/09/2026
The Independence Day remake but aliens have budgetary concerns.
000
naturepoker @binomicalabs.org · 04/09/2026
Here's another fun example of #LLM use from a PhD, Dr. James Utley. The fella took my friend's python code and LLM'd it to a terrible rust port. Which is fine, but the guy stripped out any attribution or DOI reference - because freedoms 🖥️🧬 www.instagram.com/reel/Dcy1rWk...
instagram.com
James Utley PhD on Instagram: "SpliceCraft.rs is a genetic engineering workbench built entirely in Rust. Design DNA, map plasmids, analyze restriction sites, optimize codons and plan cloning workflows...
72 likes, 6 comments - dr.james.utley on September 2, 2026: "SpliceCraft.rs is a genetic engineering workbench built entirely in Rust. Design DNA, map plasmids, analyze restriction sites, optimize cod...
322
naturepoker @binomicalabs.org · 02/09/2026
These recent AMD unified memory APUs are pretty nuts. 395+ is about 20% faster overall than Ryzen 9 5950x but with 5x faster memory access - but real cherry on the top is the machine built on it takes less than half the power draw doing the same task. The package takes less power than my laptop!
010
Reposted by naturepoker
Anthony Berndt @anthonyberndt.bsky.social · 30/08/2026
Is it just me or has the basic customer support at Thermofisher gone to absolute shit? I've had a few instances now whereI get zero email responses after a week for basic billing actions and/or spend 45 minutes on hold to then be given an email address that doesn't exist anymore.
342
naturepoker @binomicalabs.org · 30/08/2026
I remember 'thought leaders' in TED and silicon valley circuits talking in private about how tech should be in closer communication with government and work in lockstep back in early 2010's. Vaguely remember writeups on new lobby and PAC potentials too. Funny how it all worked out.
000