Reposted by Nikhil SharmaMichael Manhart @michaelmanhart.bsky.social · 25/09/2026Two interesting Ph.D. student opportunities in microbial ecology, evolution, and systems biology, in labs I think very highly of: Tobias Bollenbach, U. Cologne (bpsb.uni-koeln.de/open-positions) Andrew Letten, U. Queensland (evoldir.net/brian/evoldi...) 0128
Reposted by Nikhil SharmaKaiser Lab @clocksevolution.bsky.social · 17/09/2026We have a new #preprint on #lunar #reproductive #timing as a #magictrait in #speciation www.biorxiv.org/content/10.6... with former PhD students Alexander Jacobsen 🧪💻 Runa Ekrem 🦟🌊 🙏 Big thanks to both for the great work! #EvoBio #barriers #Chronobiology #circadian #MarineEcology 23013
Reposted by Nikhil SharmaSMB - Society for Mathematical Biology @smbmathbiology.bsky.social · 03/09/2026Here's a new #BullMathBio paper by @yuxuanzhao.bsky.social, Kaisheng Zhu, Yefei Zhang, and @danielcooney1.bsky.social on Pattern Formation in a Spatial Public Goods Dilemma due to Diffusive or Directed Motion. 🧪 link.springer.com/article/10.1...link.springer.comPattern Formation in a Spatial Public Goods Dilemma due to Diffusive or Directed Motion - Bulletin of Mathematical BiologyThe costly provision of public goods serves as a model problem for the evolution of cooperative behavior, presenting a social dilemma between the collective benefits of shared resources and the indivi... 083
Reposted by Nikhil SharmaDaniel Cooney @danielcooney1.bsky.social · 26/08/2026I am really happy to share this new preprint with Olivia Clifton and Stephanie Dodson on Kernel-Dependent Pattern Formation in a Population Model with Nonlocal Facilitation and Competition. 🧪 arxiv.org/abs/2608.23964arxiv.orgKernel-Dependent Pattern Formation in a Population Model with Nonlocal Facilitation and CompetitionSpatial patterns, such as those in dryland vegetation models, have historically been studied in systems of reaction-diffusion systems with pattern onset via a Turing bifurcation from a spatially uni... 1104
Reposted by Nikhil SharmaJoshua B. Plotkin @jplotkin.bsky.social · 10/08/2026Happy to share a new paper led by the terrific Anzhi Sheng. We find that allocation policies that promote cooperation tend to concentrate benefits among the well-connected. And so structured societies must weigh collective success against the inequality it generates. www.nature.com/articles/s41... 0156
Reposted by Nikhil Sharmatheobioarne.bsky.social @theobioarne.bsky.social · 21/07/2026What can we learn from disruptions of seasonal patterns of disease during the pandemic? A new paper by @michaelsieber.bsky.social in PLOS Global Public Health, journals.plos.org/globalpublic..., was featured in the German news such as @zeit.de or @spiegel.de - and may be of interest also here. 1/3journals.plos.orgShifts in seasonal timing of respiratory diseases and causes of death following a natural pandemic eventSeasonal respiratory infections typically surge within a limited time window, but what determines the exact timing within a given year is not well understood. Major causes of death show a similar seas... 165
Nikhil Sharma @nikhil-sharma.bsky.social · 24/04/2026Congratulations Amor! @amordamatac.bsky.social 150
Reposted by Nikhil SharmaChaitanya Gokhale @gokhalecs.bsky.social · 24/02/2026Thrilled to share our new paper with the brilliant @srishtipatil.bsky.social & @sabinenoebel.bsky.social ! 🎉 Can mate copying maintain phenotypic diversity with multiple male options to choose from? find out @ doi.org/10.1073/pnas... @dkfz.bsky.social @unihalle.bsky.social @cctb-wue.bsky.socialdoi.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 1228
Reposted by Nikhil SharmaNikoleta Glynatsi @nikoletaglyn.bsky.social · 03/11/2025🗞️📣 New paper "Exact conditions for evolutionary stability in indirect reciprocity under noise" with @chilbe.bsky.social & @yohm.bsky.social How can cooperation persist in large groups of unrelated individuals? Reputation 🗣️ But which social norms make this stable, even when mistakes happen? 🧵(1/6)journals.plos.orgExact conditions for evolutionary stability in indirect reciprocity under noiseAuthor summary Understanding how cooperation can evolve and be sustained is a central question in evolutionary biology and social science. One prominent explanation is indirect reciprocity, where indi... 1185
Reposted by Nikhil SharmaClaudia Bank @cbank.bsky.social · 28/10/2025We have an open PhD position (application deadline 9 January 2026) in "Theory of fitness landscapes" at @unibe.ch 🤓⛰️📊👩💻🎓: banklab.github.io/positions/ Please share widely! #QueerInSTEM #DisabledInSTEM #BlackInSTEM #WomenInSTEM #CarersInSTEM #AcademicSky #HigherED 03641
Reposted by Nikhil SharmaPaul Rainey @paulbrainey.bsky.social · 30/10/2025Many are painfully aware that the environment within which we function -- as scientists -- needs fixing. We've come up with a proposal for academic renewal. It's not perfect, but its a start. Input, comments, suggestions are welcome. Making a difference matters 👇 doi.org/10.5281/zeno...doi.orgPursuit of Knowledge: A Charter for Academic RenewalThis paper identifies systemic problems in how academic research is structured, evaluated, and supported. It argues for a realignment of incentives and institutional cultures to restore trust, enable ... 2138
Reposted by Nikhil SharmaYuval Simons @yuvalsim.bsky.social · 24/10/2025Why do complex traits differ in their genetic architecture? In our new PLOS Biology paper, we will try to convince you that two simple scaling laws drive differences in the number, effect sizes and frequencies of causal variants affecting complex traits. Thread: journals.plos.org/plosbiology/...journals.plos.orgSimple scaling laws control the genetic architectures of human complex traitsGenome-wide association studies have revealed that the genetic architectures of complex traits vary widely. This study shows that differences in architectures of highly polygenic traits arise mainly f... 18738
Reposted by Nikhil SharmaMasaru Kanekiyo @kanekiyom.bsky.social · 14/10/2025Just out📢 Our new paper published in @natmicrobiol.nature.com describes highly potent cross-neutralizing human monoclonal antibodies against H5Nx influenza viruses. Close collaboration with Sara Andrews lab and Tongqing Zhou lab at the VRC. Link to the article: rdcu.be/eKV9T 1/2 1199
Reposted by Nikhil SharmaLuisa F. Pallares @luisapallares.bsky.social · 14/10/2025We have put together a comprehensive eQTL map for D. melanogaster using thousands of genetically diverse flies 🪰🪰🪰🪰🪰 We hope this helps -as similar resources have done in yeast and humans- to understand how genetic variation 🧬 regulates complex traits variation 🪰 via transcriptional regulation ⬆️⬇️cell.comSaturating the eQTL map in Drosophila: Genome-wide patterns of cis and trans regulation of transcriptional variation in outbred populationsPallares et al. collect over a thousand RNA-seq and DNA samples from Drosophila melanogaster flies to investigate the genetic basis of gene expression variation. They find eQTLs for 98% of the genes a... 02010
Reposted by Nikhil SharmaKaiser Lab @clocksevolution.bsky.social · 17/09/2025How can larval #competition for space, adult #reproductive #timing and the #tides interact to produce different timing strains, aka #chronotypes, of the marine insect #Clunio? See our latest preprint with Alec Jacobsen & @gokhalecs.bsky.social #evolution #ecology #chronobiology #circalunar #clockbiorxiv.orgHow competition can drive allochronic divergence: a case study in the marine midge, Clunio marinusSynchronizing mating to extrinsic environmental cycles can increase the chance of successful reproduction. However, the resulting temporally-assorted mating may precipitate speciation if coupled with ... 182
Reposted by Nikhil SharmaKaiser Lab @clocksevolution.bsky.social · 09/10/2025WE ARE HIRING! Please spread widely! #Postdoc in #Evolutionary #Genomics -> www.mpg.de/25524526/ #Postdoc in #Molecular #Biology & #Cell #Signalling -> www.mpg.de/25524509/ @mpi-evolbio.bsky.social @maxplanck.de #ScienceJobs #EvoBio #MolBio #Ecology #Chronobiology #Marine #EntoSky #Biodiversity 01213
Reposted by Nikhil SharmabioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 30/09/2025Adaptive Dynamics of Quantitative Traits in a SteadilyChanging Environment www.biorxiv.org/content/10.1101/202… 061
Reposted by Nikhil SharmaHye Jin Park @hyejinpark.bsky.social · 18/09/2025Rafting against the evolutionary waterfall! 🚣♂️💨 - see our new paper on the challenge of artificial selection of microbial collectives elifesciences.org/articles/97461elifesciences.orgThe success of artificial selection for collective composition hinges on initial and target valuesMathematical modeling uncovers how initial and target compositions limit microbial community selection, as inter-community selection clashes with intra-community selection like a rafter battling a wat... 022
Reposted by Nikhil SharmaKyle Card @kylejcard.bsky.social · 27/09/2025Thrilled to share our paper that just came out in PNAS! We asked a deceptively simple question: What happens when S. aureus adapts to vancomycin, a critical first-line antibiotic? 1/5 3386
Reposted by Nikhil SharmaJoanna Masel @joannamasel.bsky.social · 16/09/2025Our new paper @asn-amnat.bsky.social develops a Grand Unified Theory including both exploitative and interference competition doi.org/10.1086/737628. The R* rule of ecology (that 2 species cannot coexist on a single resource), is widely broken, including via a new trade-off we describe. 1/9doi.orgA Mechanistically Integrated Model of Exploitative and Interference Competition over a Single Resource Produces Widespread Coexistence | The American NaturalistAbstract Many ecological models treat exploitative competition in isolation from interference competition. Corresponding theory centers around the R* rule, according to which consumers that share a si... 13821
Reposted by Nikhil SharmaMichael Hochberg @mkhochb.bsky.social · 11/09/2025What future does AI hold? With @paulbrainey.bsky.social, we hypothesize that human-AI coevolution is leading to the emergence of a new evolutionary unit of selection. Science fiction or looming fact? Read our paper and judge for yourself. www.pnas.org/doi/10.1073/... 1197
Reposted by Nikhil SharmaDeepa Agashe @deepaagashe.bsky.social · 11/09/2025About 10 years ago, we set up lots of experimental beetle populations, censused monthly. Expecting extinction, I said the workload would drop soon. But they all rescued themselves! 😱 So Vrinda & co kept counting. Many hundreds of thousands of beetles later, we have some neat outcomes. Enjoy! 1265
Reposted by Nikhil SharmaSchulenburg Lab Kiel @schulenburglab.bsky.social · 08/09/2025We are welcoming applications for a full professorship on Molecular and Evolutionary Zoology at Kiel Univerdity, Northern Germany, with fantastic facilities and infrastructure! @uni-kiel.de @crc1182.bsky.social @transevo.bsky.social www.nature.com/naturecareer...nature.comW 3 professorship in Molecular and Evolutionary Zoology - Kiel, Schleswig-Holstein (DE) job with Christian-Albrechts-Universität zu Kiel | 12844416Kiel University aims to attract more qualified women to professorship positions. The Institute of Zoology at the Faculty of Mathematics and Natural... 02547
Reposted by Nikhil SharmaSchulenburg Lab Kiel @schulenburglab.bsky.social · 08/09/2025I am happy to announce publication of our new perspectives paper on applying evolutionary theory to host-microbiome evolution - new tricks for old dogs! @bweek.bsky.social @uni-kiel.de @transevo.bsky.social @crc1182.bsky.social www.nature.com/articles/s41...nature.comApplying evolutionary theory to understand host–microbiome evolution - Nature Ecology & EvolutionThis Perspective discusses how well-established theoretical models of evolution can be adapted to study and generate testable predictions about the evolutionary dynamics of host–microbiota association... 03117
Reposted by Nikhil SharmaJessica Metcalf @jessmetcalf.bsky.social · 17/08/2025New paper from Burcu - working towards describing 'immune education' journals.plos.org/plosbiology/...journals.plos.orgA model of early-life interactions between the gut microbiome and adaptive immunity provides insights into the ontogeny of immune toleranceThe developing immune system must learn which microbes to tolerate and which to resist, but how this process unfolds is unclear. This study develops a mechanistic mathematical model of early-life gut ... 1276
Reposted by Nikhil SharmaKaumudi Prabhakara @kaumudi.bsky.social · 11/08/2025A new preprint! Data from a huge experiment by @prczhaoyansong.bsky.social show that similar microbial communities diverge depending on whether the carbon source is glucose or its polymer, cellulose. Diversity is comparable, but biomass, functions and taxonomy differ: www.biorxiv.org/content/10.1...biorxiv.orgDiverse microbial communities assemble on both recalcitrant and labile carbon sourcesMicrobial community assembly is shaped by the nature of available resources, with labile carbon sources such as glucose often expected to support low diversity due to rapid growth and competitive excl... 1136
Reposted by Nikhil SharmaGaurav Athreya @gauravathreya.bsky.social · 23/07/2025Interested in host-symbiont interdependence, eukaryogenesis, and evolutionary transitions in individuality? my first paper just came out! With @gokhalecs.bsky.social and Pete Czuppon, we study when & how individuality emerges in a host-endosymbiont collective doi.org/10.1086/737588 a short thread🧵: 57027
Reposted by Nikhil SharmaDeepa Agashe @deepaagashe.bsky.social · 19/07/2025So happy to see this paper finally out! Ridiculous amount of work by Mrudula Sane and Shazia Parveen, showing that reversing baseline transition bias is good, as predicted by models from Lindi Wahl and co. Big thanks to @ncbsbangalore.bsky.social and DBT/WT India Alliance for support. 1196
Reposted by Nikhil SharmaBen Allen @evodynamics.bsky.social · 15/07/2025I wrote an Insight piece to accompany new work by Matthijs van Veelen on incorporating nonlinearity into Hamilton's rule. elifesciences.org/articles/108... TL;DR: The future of evolutionary theory is nonlinear, and our mathematical tools should reflect that. 4173
Reposted by Nikhil SharmaPLOS Biology @plosbiology.org · 15/07/2025Mutations generate variation, critical for #evolution, but #MutationBias restricts the choice of mutation type. @deepaagashe.bsky.social &co use #Ecoli strains with different mutation biases to show that changing an old bias should yield more beneficial mutations @plosbiology.org 🧪 plos.io/46LjCRt 033