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Julian Damashek

@mesohaline.bsky.social
412 followers 493 following 43 posts

Microbial ecology, ‘omics, and nutrient cycling in aquatic ecosystems. Water Quality Scientist, Riverkeeper Formerly: Hamilton College, Utica University amoebalab.me

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Reposted by Julian Damashek
Nicholas Grossman @nicholasgrossman.bsky.social · 15/01/2026
US higher education was a crown jewel, generating knowledge, wealth, prestige, and power unrivaled by anyone. And the US is throwing it away, because Americans elected a govt ideologically opposed to truth, science, merit, and racial/gender equality, preferring to weaken the country to reduce that.
nytimes.com
Chinese Universities Surge in Global Rankings as U.S. Schools Slip
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Michael E. Mann @michaelemann.bsky.social · 15/01/2026
Here's the data:
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Vaughn Cooper @vscooper.micropopbio.org · 06/01/2026
The @asm.org statement in response to the changes in the childhood immunization schedule: asm.org/press-releas...
Jan. 5, 2026

The rationale for the recent updates to the U.S. childhood immunization schedule is, at best, uncertain and sets a potentially dangerous precedent for public health. Whatever improvements may be needed to the process the U.S. Centers for Disease Control and Prevention (CDC) has followed in the past to update vaccine recommendations, it is unclear what scientific evidence led to these new guidelines.

Protecting a country’s public health presents unique challenges that are specific to that country’s population. The prevalence of diseases in the U.S. is not the same as it is in other countries, and public health recommendations should be made based on the public health challenges faced by the American people.

The changes by the CDC will reduce the number of recommended childhood vaccines from 17 to 11. This includes narrowing the recommendation for the flu, which has already contributed to the deaths of at least 9 children this season and a near record number of pediatric flu deaths last season.

Vaccines are a safe and effective tool to prevent the spread of infectious disease and infection-related deaths, and they have saved and continue to save lives. While we concur with National Institutes of Health Director Jay Bhattacharya that “science demands continuous evaluation,” that must occur with full transparency and input from the scientific community. The schedule changes weaken vaccine recommendations at a particularly critical time. It is crucial that expert consultation and a review of scientific evidence be included in the decisions that impact the health and safety of the country.
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Roland Hatzenpichler @environmicrobio.bsky.social · 06/01/2026
New paper out in Current Opinion in Microbiology: MCR-encoding (potentially methanogenic) Thermoproteota are widespread and transcriptionally active in diverse anoxic ecosystems! @dr-zj.bsky.social, Matthew Kellom & @emileyeloe-fadrosh.bsky.social. Funded by DOE BER program. tinyurl.com/2fsyxswj 🦠🧪
Phylogeny and ecology of MCR-encoding archaea
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Variety of Life @varietyoflife.bsky.social · 16/07/2025
The Nocardioidaceae: obscure bacteria that could be key to cleaning up some of the world's worst pollution. varietyoflife.net/nocardioidac...
Nocardioides halotolerans, from Dastager et al. (2008).
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Paul Eric @pauleric70.bsky.social · 28/12/2025
It took 9 years and 3 billion miles to get this shot. Pluto’s icy Mountains. Thankyou NASA ☺️
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Ákos T Kovács @evolvedbiofilm.bsky.social · 27/12/2025
Higher levels of antibiotic resistance are less competitive: the hidden ecological cost of no-metabolic cost resistance bioRxiv from Peter Yunker www.biorxiv.org/content/10.6...
biorxiv.org
Higher levels of antibiotic resistance are less competitive: the hidden ecological cost of no-metabolic cost resistance
Antibiotic resistance is often assumed to be constrained by fitness costs that limit the spread of highly resistant strains. Yet, many resistance mechanisms – including enzymatic antibiotic degradatio...
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Joe Mason @moreorloess.bsky.social · 26/12/2025
Mouth of the Eel River, northern California, morning of Dec 22. Peak flow at Scotia, off this image to the south of the marker, was early on the morning of the 22nd, though it's currently rising again. Sentinel 2 image. I believe the Eel R basin still has highest measured sediment yield in the US.
Sateliite image showing a flooding, sediment-laden river flowing into the ocean and producing a large plume. The landscape around the river is green, including agricultural fields, wetlands and grassland, and forest. Clouds cover large parts of the image.
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Christopher Mims @mims.bsky.social · 26/12/2025
some good climate/energy news: * 96% of new US power capacity was carbon-free in 2024 (56 gigawatts!) * 2025 included the first month ever when 51% of power on the U.S. grid was carbon-free * The golbal trend is overwhelming: The world is now investing more $ in clean energy than fossil fuels
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Julian Damashek @mesohaline.bsky.social · 26/12/2025
On a recent walk in Ossining 🤨
Sign posted in front of riverbank: “WARNING. Do not trust anyone. Do not leave your garbage.”
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H. B. Beryl Rappaport @hbrappap.bsky.social · 25/11/2025
So happy to announce our new preprint, “A geothermal amoeba sets a new upper temperature limit for eukaryotes.” We cultured a novel amoeba from Lassen Volcanic NP (CA, USA) that divides at 63°C (145°F) 🔥 - a new record for euk growth! #protistsonsky 🧵
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Archaea Power Hour @archaeapowerhour.bsky.social · 25/11/2025
Archaeasalutations!! Archaea Power Hour is back tomorrow (Wednesday) at 10 AM EST / 4 PM CET!! Check your email for the Zoom link or sign up to join our mailing list here: docs.google.com/forms/d/e/1FAI…. Check out the two exciting talks we have planned for you:
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Fidy Rasambainarivo @fidydvm.bsky.social · 03/11/2025
The Department of Biology at @eastcarolinauniv.bsky.social seeks to fill a tenure-track faculty at the Assistant Professor level with expertise in evolutionary Biology! Come join us! ecu.peopleadmin.com/postings/89839
ecu.peopleadmin.com
Assistant Professor
The Department of Biology at East Carolina University (http://www.ecu.edu) seeks to fill a tenure-track faculty position (9-month appointment) at the Assistant Professor rank with expertise in evoluti...
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Alejandro Rodríguez-Gijón @alejandrorgijon.bsky.social · 06/10/2025
I am extremely happy to share our latest manuscript "Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance". This project started back in 2021-2022 and after a long time, it sees the light today! www.nature.com/articles/s41...
nature.com
Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance - Scientific Reports
Scientific Reports - Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance
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Kristen DeAngelis 🏳️‍🌈🏳️‍⚧️🍉 @kristenobacter.bsky.social · 02/10/2025
UMass Amherst Microbiology is hiring a tenure-track virologist. Come work with me! 🦠🧪 careers.umass.edu/amherst/en-u...
careers.umass.edu
Details - Assistant Professor - Virology | Human Resources | UMass Amherst
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Mark O. Martin @markowenmartin.bsky.social · 29/08/2025
New week-new episode of the #MattersMicrobial podcast!! Dr. Roxanne Beinart of the University of Rhode Island joins the #QualityQuorum to chat about the work her group does on deep sea chemoautrophic communities & symbioses! Please spread the #GoodMicrobialWord? youtu.be/mERRJOuEsB4?...
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Julian Damashek @mesohaline.bsky.social · 02/09/2025
Wow it’s been a busy few months. I live in New Paltz now! And work in Kingston! It’s the first fall in 7 years where I’m not panic-prepping courses! I love undergrads and miss some parts of academia, but not others. And I’m super excited about my Riverkeeper projects (both new and continuing)!
Photo of a red bridge over a small river, with a clear reflection of the bridge, sky, and riparian foliage.
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Global Change Biology @globalchangebio.bsky.social · 03/08/2025
Global Patterns and Environmental Drives of Nitrite/Nitrate‐Dependent Anaerobic Methane Oxidation Across Natural Ecosystems 🔗 buff.ly/Q8O6xbM
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BejaLabTechnion @bejalab.bsky.social · 04/08/2025
A novel mobile genetic element with virus-like characteristics is widespread in the world's oceans www.biorxiv.org/content/10.1...
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Kathi Kitzinger @kathikitzinger.bsky.social · 04/08/2025
🚨4yr Technical Assistant Position on #Microbial Activities in #Marine #N-Cycling🦠🧪👩‍🎓🔬 Join me @univie.ac.at @dome-vienna.bsky.social Part of our ERC Synergy #RECLESS looking at microbes in marine oxygen minimum zones Apply by Oct 15, start March 2026! -> ucloud.univie.ac.at/index.php/s/...
ucloud.univie.ac.at
RECLESS_TA_molecular_UniVie.pdf
u:cloud - Ihre Daten, auf Wolken gebettet.
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Jed Fuhrman @jedfuhrman.bsky.social · 31/07/2025
Just out: metagenomics with internal standards yields phylogenetically resolved genome ("~cell") counts of bacteria, archaea, and photosynthetic eukaryotes per L of seawater, over the AMT29 Atlantic transect, via "single copy" genes (recA, radA, psbO). Compares with microscopy and flow cytometry.
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Nelson Flores @nelsonlflores.bsky.social · 24/07/2025
In my latest blog post I lay out some things we as faculty can do to ensure that higher education remains an incubator that prepares future generations for a multiracial democracy as opposed to an incubator for Trump's fascist agenda. Check it out! educationallinguist.wordpress.com/2025/07/24/a...
educationallinguist.wordpress.com
As Universities Cede to Fascism, Faculty Must Refuse to Follow
Once upon a time, universities sought to be spaces where critical thought was championed, diversity was celebrated, and academic freedom was valued. Since the Civil Rights Movement, many universiti…
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Mike Jetten @msmjetten.bsky.social · 23/07/2025
Congratulations 🎉 now on line at @isme-microbes.bsky.social : Comparative genome analysis reveals broad phylogenetic and functional diversity within the order #Nitrospirales Linnea Kop et al #microbiology @ribesresearch.bsky.social (RIBES) icw @univie.ac.at academic.oup.com/ismej/advanc...
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Vaughn Cooper @vscooper.micropopbio.org · 14/07/2025
Love this new minireview in J. Bacteriology by @archaeal.bsky.social and colleagues: "Laboratory-based studies must be grounded in nature, not the other way around." And we should focus on members of Earth's dominant microbes from key environments as models. journals.asm.org/doi/10.1128/...
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Reynier Squillace @mountreynier.bsky.social · 06/07/2025
Green Bank Observatory, one of the most powerful telescopes in the world, is facing an apocalyptic budget cut request (-70%, and the NSF recommends shutting it down). Here's how you can help save this miracle of science and engineering: www.gogreenbankobservatory.org/take-action/
gogreenbankobservatory.org
Take Action – Go Green Bank Observatory
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CosmicRami 🏳️‍🌈🏳️‍⚧️ @rami.spaceaustralia.com · 06/07/2025
US Friends! The Green Bank Observatory (GBO) is a vital instrument in the global #RadioAstronomy network (incl. pulsar science), and it is under threat with the proposed funding cuts. Please take action to keep it open: www.gogreenbankobservatory.org/take-action/ Pls share! 🔭📡🧪 📸 GBO/AUI/NSF
a large, white dish antenna telescope in the distance between the rolling hills. The trees in foreground and background are both golden amber as well as green.
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Alan Gerard @wxmanms1.bsky.social · 06/07/2025
I have spent the last 24 hours looking at media reports and social media posts about the Texas Hill County tragedy and being appalled by the level of misinformation I am seeing. I have tried to put together an updated, more reasoned summary I hope you'll read. open.substack.com/pub/balanced...
open.substack.com
Latest on Texas Hill Country flood tragedy
Chantal makes landfall in South Carolina
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Dr. Stephanie @punkrockscience.bsky.social · 05/07/2025
University of Minnesota Duluth’s research vessel grows a mysterious goo, and when the captain finds it during repairs, he scoops up a glob of it and takes it back for analysis. “Hey, we work for scientists. We have people who do things,” he says. BIG VIBES.
cleveland.com
Mysterious life form found on ship that docked in Cleveland
Scientists have dubbed the tar-like substance ShipGoo001.
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Julian Damashek @mesohaline.bsky.social · 28/06/2025
Best conference camp every summer! #NEMPET25
Evening sun over an Adirondack lake, with silhouetted trees in the background.
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Corey Garza @profcgarza.bsky.social · 01/06/2025
We are accepting applications for the GeoFutures program. The program provides mentoring & travel support for geoscience undergrads attending the 2025 @sacnas.bsky.social conference. Priority app deadline 06-16-25 @cientificolatino.com @official-bweems.bsky.social environment.uw.edu/about/inclus...
Logo for GeoFutures program.
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Julian Damashek @mesohaline.bsky.social · 27/05/2025
Insane.
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Elisabeth Bik @elisabethbik.bsky.social · 23/05/2025
Based on a story first reported by @forbetterscience.bsky.social here: forbetterscience.com/2025/05/19/a...
forbetterscience.com
A Sting Inside a Papermill
“It’s clear that any academically corrupt individual — particularly one with editorial connections — could easily “place” dozens of these Anzen products into indexed journals and collect a ha…
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Elisabeth Bik @elisabethbik.bsky.social · 23/05/2025
Inside a Scientific Paper Mill @dereklowe.bsky.social writes about how Csaba Szabo was contacted by a paper mill and offered money if he could help them write more junk papers. www.science.org/content/blog...
science.org
Inside a Scientific Paper Mill
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Cameron Thrash @jcamthrash.bsky.social · 26/05/2025
Predicting gene distribution in ammonia-oxidizing archaea using phylogenetic signals academic.oup.com/ismecommun/a... #jcampubs
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Julian Damashek @mesohaline.bsky.social · 26/05/2025
That strain identifier…
media.tenor.com
a man with a mustache is sitting at a desk
ALT: a man with a mustache is sitting at a desk
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Leo Lahti @antagomir.bsky.social · 22/05/2025
Did you know that the female #microbiome is unique in many ways, and antibiotic resistance in the gut microbiome varies between genders? See npj Biofilms and Microbiomes special issue, Women and their microbes, to learn more! www.nature.com/collections/...
nature.com
Women and their microbes
This collection invites research on all aspects of women’s health involving the microbiome from different body sites and its interplay with fertility, ...
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Stockholm University Baltic Sea Centre @balticseacentre.bsky.social · 19/05/2025
Come work with us! We are currently hiring a Postdoctoral Fellow in marine microbial environmental genomics, to focus on microorganisms that produce and consume greenhouse gases and volatile organic compounds (VOCs) in the coastal Baltic Sea. Apply before 22 June! su.varbi.com/en/what:job/...
su.varbi.com
Postdoctoral Fellow in Marine microbial environmental genomics
Stockholm University’s Baltic Sea Centre (BSC) conducts research on the Baltic Sea environment and supports research and education related to the Baltic Sea carried out at various departments within
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Julian Damashek @mesohaline.bsky.social · 21/05/2025
I vote for all together, if the announcement can be one big Arrested Development pun (only half joking)
media.tenor.com
a man with blue paint on his body and glasses is talking to another man
Alt: A man with a beautiful mustache is covered in blue paint, gesticulating to another person in the kitchen.
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Melanie Blokesch @mblokesch.bsky.social · 21/05/2025
Our new paper on MGEs in Vibrio cholerae is now out in Genome Biology and Evolution @genomebiolevol.bsky.social Huge congrats to former PhD student Natália Drebes Dörr @nataliadrebesdorr.bsky.social 🎉🍾🥳 for the great work & thx to Alexandre Lemopoulos for bioinformatics support shorturl.at/0LveK
academic.oup.com
Exploring Mobile Genetic Elements in Vibrio cholerae
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Steven Robbins @stevenjrobbins.bsky.social · 21/05/2025
Very excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂 www.biorxiv.org/content/10.1...
biorxiv.org
The planktonic microbiome of the Great Barrier Reef
Large genome databases have markedly improved our understanding of marine microorganisms. Although these resources have focused on prokaryotes, genomes from many dominant marine lineages, such as Pela...
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Julian Damashek @mesohaline.bsky.social · 19/05/2025
Worth a quick hop over the hill: m.facebook.com/themoananddo...
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Julian Damashek @mesohaline.bsky.social · 14/05/2025
All technical statistics books should start like this! @rmcelreath.bsky.social 👏🏼
Picture of the beginning of chapter one from Richard McElreath’s book “Statistical Rethinking,” which starts with a few paragraphs describing the Golem of Prague.
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Julian Damashek @mesohaline.bsky.social · 13/05/2025
Planning on it! Hopefully with one or two students.
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Julian Damashek @mesohaline.bsky.social · 13/05/2025
Sounds awesome. Are you going to NEMPET again this year?
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Julian Damashek @mesohaline.bsky.social · 13/05/2025
Heck yeah! What are you all sampling?
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Julian Damashek @mesohaline.bsky.social · 13/05/2025
Super fun class!
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International Society of Glomerular Disease @isgd.bsky.social · 08/05/2025
PARASOL biostats leads Abigail Smith and Margaret Helmuth gave a guest lecture today in @mesohaline.bsky.social’s #HamiltonCollege BIO 202 Biostatistics class - Nice examples of statistical methods & considerations in longitudinal studies and clinical trials & real life impact of biostats work
PARASOL project biostatisticians Margaret Helmuth and Abigail Smith, and ISGD director Laurel Damashek, participating via Zoom in a Hamilton College biology classroom
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The Banfield Lab @banfieldlab.bsky.social · 29/04/2025
Excited to share new research led by our very own @lingdong-shi.bsky.social showing that many archaeal 23S rRNAs are circularized in active ribosomes. Check out the preprint below.
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Julian Damashek @mesohaline.bsky.social · 10/04/2025
🧐
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Julian Damashek @mesohaline.bsky.social · 09/04/2025
Carotenoids? Usually a little redder though.
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