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Matteo Zambon

@mattezambon.bsky.social
146 followers 438 following 4 posts

PhD student @CRG.eu, Dias-Frazer Lab, Irimia Lab | Probabilistic Machine Learning and Computational Biology, Evolutionary Biology

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Reposted by Matteo Zambon
Ezequiel Galpern @eag91.bsky.social · 05/08/2026
1/ New preprint! with @solersanchisx.bsky.social @cwjpugh.bsky.social @federicobilleci.bsky.social @jonnyfrazer.bsky.social and Mafalda Dias, we introduce a scalable framework to improve stability prediction and separate folding from functional constraints. www.biorxiv.org/content/10.6...
biorxiv.org
Blending physics-based and inverse folding models to disentangle variant effects on stability and function
Protein sequences are constrained not only by the need to fold into stable structures, but also by specific functional requirements imposed by natural selection. Yet predictions of how amino-acid chan...
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Miquel Anglada-Girotto @m1quelag.bsky.social · 28/07/2026
1/ We’ve been working on making it easier to fine-tune AlphaGenome on new RNA-seq samples, with a focus on one of my favourite regulatory layers: splicing! Blog post: genomicsxai.github.io/blogs/2026-0...
genomicsxai.github.io
Beyond coverage tracks: fine-tuning AlphaGenome's splicing heads from scratch
Summary DeepMind has released AlphaGenome’s code and model weights, and the community has since developed alphagenome_ft and alphagenome-pytorch to enable seamless fine-tuning in both JAX and PyTorch....
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Jonathan Frazer @jonnyfrazer.bsky.social · 23/10/2025
Applications are open for the @crg_eu PhD Programme! 20 fully funded positions — including one in our group through the Evolutionary Medical Genomics ITN. Join us to develop deep generative models of cross-species data to tackle open questions in disease genetics. www.crg.eu/en/content/t...
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Manuel Irimia @mirimiam.bsky.social · 06/08/2025
🧬🧬🧬 New review from the lab: Evolution of comparative transcriptomics: biological scales, phylogenetic spans, and modeling frameworks authors.elsevier.com/sd/article/S... By @mattezambon.bsky.social & @fedemantica.bsky.social, together with @jonnyfrazer.bsky.social & Mafalda Dias.
Three major trends in comparative transcriptomics
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Isabelle Zane @isabellease.bsky.social · 22/05/2025
@cwjpugh.bsky.social at #VariantEffect25
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Antonio Scialdone @antonio-scialdone.bsky.social · 12/02/2025
How can we improve gene regulatory network inference from noisy scRNA-seq data? Our new review in @molsystbiol.org explores the latest methods integrating prior knowledge to enhance reliability. Plus, some suggestions on how to improve benchmarking! www.embopress.org/doi/full/10....
embopress.org
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data | Molecular Systems Biology
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.
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Matteo Zambon @mattezambon.bsky.social · 29/11/2024
Art and science merged this afternoon in a wonderful concert from our fellow PhD candidate Matilda Pfeiffer toghether with the musician Clara Cantore in a performance reflecting on points of contact between music and science. Couldn’t be more happy to be part of this phd community 💫 #CRGPhDSymp2024
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iseultleahy.bsky.social @iseultleahy.bsky.social · 29/11/2024
A highly relevant talk from Nico Lorenzon describing novel diagnostic tools to assess treatment resistance in Mayor Depressive Disorder #CRGPhDSymp2024
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nuriamimbrero.bsky.social @nuriamimbrero.bsky.social · 29/11/2024
Attending a fascinating talk by Khashayar Baghizadeh on data-driven computational modeling of the Dentate Gyrus in Down Syndrome. Great work integrating anatomical and physiological data to unravel underlying mechanisms. #CRGPhDSymp2024
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Matteo Zambon @mattezambon.bsky.social · 29/11/2024
As the #CRGPhDSymp progresses, Leo Zuber gave an insightful talk on his research integrating spatial information with GWAS data for developing a spatially aware, tissue-specific genomic risk score, evaluated in the context of COVID-19 disease severity. 🦠🧬
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iseultleahy.bsky.social @iseultleahy.bsky.social · 29/11/2024
Next up is Andrea Barrera! Presenting a fascinating talk which leaves us wondering, can metabolic intervention affect genome stability? #CRGPhDSymp2024
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iseultleahy.bsky.social @iseultleahy.bsky.social · 29/11/2024
Kicking us off today is Tamara Perteghella from the Guigó lab with her talk on the latest release of #GENCODE, dramatically increasing the number of annotated lncRNAs. Well done to everyone involved in the consortium! #CRGPhDSymp2024
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Matteo Zambon @mattezambon.bsky.social · 29/11/2024
Sun is shining above PRBB for the second day of the 2024 PhD Symposium ☀️ I don’t think I’ll get tired anytime soon of sea’s view for my morning coffee 🤗 #CRGPhDSymp2024
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Lasse Middendorf @lassemiddendorf.bsky.social · 28/11/2024
Reporting from the #CRGPhDSymp2024 today and tomorrow! Kicking it off with a fascinating talk Gioia Quarantani on DMS of a 1000 exons to investigate alternative splicing
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nuriamimbrero.bsky.social @nuriamimbrero.bsky.social · 28/11/2024
Very interesting talk from Pablo Lanuza about mechanistic understanding of splicing, titled SPF45 and 3'splice site proofreading. #CRGPhDSymp2024 #splicing
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iseultleahy.bsky.social @iseultleahy.bsky.social · 28/11/2024
Navigating the #CRGPhDSymp2024 poster session, I’m slowly becoming an expert at nodding thoughtfully while frantically trying to understand someone’s life work in 3 minutes!
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iseultleahy.bsky.social @iseultleahy.bsky.social · 28/11/2024
Great talk from Javier Navarro Delgado on understanding, predicting and engineering variant effects in synthetic antibodies. #AntibodyDiscover #CRGPhDSymp2024
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Matteo Zambon @mattezambon.bsky.social · 28/11/2024
Great talk from Laia Montes Espuna at the @crg.eu PhD Symposium! Her work is focused on cell type diversity in early metazoans, aiming at broadening the understanding of cell type identity programs across the animal kingdom 🪸🧬 #CRGPhDSymp2024
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Centre de Regulació Genòmica (CRG) @crg.eu · 28/11/2024
Our amazing CRG PhD community are celebrating their annual symposium today and tomorrow. Follow our first year students on Bluesky for snippets about all the amazing talks featured this year: @lassemiddendorf.bsky.social @mattezambon.bsky.social @iseultleahy.bsky.social
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Centre de Regulació Genòmica (CRG) @crg.eu · 23/11/2024
Big 🧬 news this week: we have launched the first Joint Program on Evolutionary Medical Genomics. Spearheaded by @mirimiam.bsky.social, Barcelona researchers will study and exploit the vast genomic diversity of life on Earth to enhance precision medicine. Full story in @elpais.com
english.elpais.com
The dawn of a new medicine: Researchers use the theory of evolution to fight cancer
The world’s first joint research program in evolutionary medical genomics has been launched in Barcelona, under the direction of biologist Manuel Irimia
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