markgerstein.bsky.social @markgerstein.bsky.social · 23/09/2026Posting a short talk tomorrow for the Quantum World Congress on using Quantum Computing to achieve Biomedical Privacy lectures.gersteinlab.org/summary/Quan... #QWC2026 000
markgerstein.bsky.social @markgerstein.bsky.social · 29/07/2026Posting my talk tomorrow at Oxford CS on AI in Structural Bioinformatics lectures.gersteinlab.org/summary/AI-S... Modelling Flexibility, Disorder & Interactions. Lots of new slides on World Models for protein folding. 020
markgerstein.bsky.social @markgerstein.bsky.social · 24/07/2026Posting my talk today at the University of Montpellier on the changing challenges in genomics lectures.gersteinlab.org/summary/Chan... Lots of slides on variant impact models 000
markgerstein.bsky.social @markgerstein.bsky.social · 20/07/2026Posting my talk tomorrow at @crg.eu in Barcelona (hosted by @beaborsari.bsky.social & @guigolab.bsky.social) lectures.gersteinlab.org/summary/Usin... Lots of slides on the AI Scientist 000
markgerstein.bsky.social @markgerstein.bsky.social · 20/07/2026Posting my talk today on the 25th anniversary of the human genome (hosted by @beaborsari.bsky.social) lectures.gersteinlab.org/summary/Chan... Lots of new slides on variant impact models & pseudogene epigenetics across tissues 010
markgerstein.bsky.social @markgerstein.bsky.social · 12/07/2026Posting my talk today for tutorial IP2 at @iscb.bsky.social's #ISMB2026: LLMs & Agentic AI for Biomedical Informatics (organized by R Tang) lectures.gersteinlab.org/summary/LLMs... Has lots of slides on case studies for LLMs in brain genomics & comparisons with more classic approaches 042
markgerstein.bsky.social @markgerstein.bsky.social · 18/06/2026Finished @carlzimmer.com's genome this year too, doing X & Y. Great thanks to the TFs (Andy Chu, Suchen Zheng, Michelle Yu, Anna Su & Weihao Zhao) for putting everything together & the @yalecbb.bsky.social, @yaledatascience.bsky.social & @yalembb.bsky.social students for participating!! 022
markgerstein.bsky.social @markgerstein.bsky.social · 18/06/2026Post term, cleaned up my biomed. data sci. course website. gersteinlab.org/courses/3520 Now in its 28th year. New thing this year was #AI integration: the students merged (with color coding) the manual & AI summaries of each lecture. Also, lots of new posted videos & PDFs (esp. on DL) 100
markgerstein.bsky.social @markgerstein.bsky.social · 04/06/2026Posting my talk tomorrow at #FOGBoston (#FOG26) lectures.gersteinlab.org/summary/Mult... Lots of slides on single-cell multi-omics integration for brain disorders. New slides on a formalism for model interpretation @flgenomics.bsky.social @fogenomics.bsky.social 010
markgerstein.bsky.social @markgerstein.bsky.social · 20/05/2026Thoughts on Robert Wachter's Giant Leap blog.gerstein.info/2026/05/thou... Great points about AI's early missteps vs current successes in medicine 000
markgerstein.bsky.social @markgerstein.bsky.social · 16/03/2026Posting my talk tomorrow at St. Johns U. on brain genomics lectures.gersteinlab.org/summary/Clas... Lots of new slides on the challenges of AI model applicability to genomics & on private federated learning with co-variate matching. 021
markgerstein.bsky.social @markgerstein.bsky.social · 08/03/2026Posting my talk tomorrow @nygenome.org (hosted by @gamzeandgursoy.bsky.social). lectures.gersteinlab.org/summary/AI-A... Doing genomics with AI & then seeing if AI can take over the whole thing (spoiler: not yet!). New slides on assessing agent models with externalized reasoning (vs. baselines) 062
markgerstein.bsky.social @markgerstein.bsky.social · 29/12/2025Thoughts on @jsellenberg.bsky.social's Shape blog.gerstein.info/2025/12/thou... Engaging Stories about Hard Stuff, esp. liked the Discussion of Math behind AI 000
markgerstein.bsky.social @markgerstein.bsky.social · 02/12/2025Posting my talk tomorrow @umich.edu, on analyzing endophenotypes (expression, biosensors & imaging). lectures.gersteinlab.org/summary/Geno... Lots of new slides on using the @gtexportal.bsky.social images to predict age 010
markgerstein.bsky.social @markgerstein.bsky.social · 20/11/2025Posting my talk at UW Madison (the DeMets lecture, hosted by @daifengwang.bsky.social). Lots on bioinformatics methods for studying the brain: classic, present (DL) & future (quantum) lectures.gersteinlab.org/summary/Clas... New slides on AI agents & homomorphic encryption for privacy 010
markgerstein.bsky.social @markgerstein.bsky.social · 10/11/2025Posting my talk tomorrow at the Computational Molecular Sciences & Engineering (CMSE) Symposium @Yale lectures.gersteinlab.org/summary/Enha... Lots of new slides on the discard-and-restart approach for enhanced structural sampling 020
markgerstein.bsky.social @markgerstein.bsky.social · 05/11/2025Posting my talk today for the AI in Health Series lectures.gersteinlab.org/summary/AI-M... Goes over an evolution of computational methods for biomedicine: Classical, DL & Quantum. 010
markgerstein.bsky.social @markgerstein.bsky.social · 16/10/2025Posting my talk tomorrow on Biomed AI @mila-quebec.bsky.social lectures.gersteinlab.org/summary/Biom... Some new slides from Yunzhe Jiang on ENTEx & variant impact prediction and W Lee on ensembling ML models for drug screening 000
markgerstein.bsky.social @markgerstein.bsky.social · 09/10/2025Posting my talk tomorrow on AI in Biomedicine at Einstein Med (hosted by @zhengdy.bsky.social) lectures.gersteinlab.org/summary/AI-t... Using AI for brain genomics & thinking about how it can do this research autonomously. Lots of new slides on AI coding & risks 000
markgerstein.bsky.social @markgerstein.bsky.social · 06/09/2025Did my annual triathlon today in Madison. Good swim. Steady bike. Walk-skip-walk to the finish line. Made it! And, unlike last year, did an extensive stretch afterwards & drove myself home. Before & after race pics. (More at flickr.com/photos/mbgmb...) 020
markgerstein.bsky.social @markgerstein.bsky.social · 18/08/2025Posting my talk on AI & Brain Disorders at Princeton CHDI on Tuesday lectures.gersteinlab.org/summary/Ext-... Lots of new slides on drug repurposing and predicting age from histology images 000
markgerstein.bsky.social @markgerstein.bsky.social · 03/08/2025Thoughts on Pearl's Book of Why blog.gerstein.info/2025/08/thou... Lots of Good Intuition on Bayesian Networks, Sometimes with Strong Opinions 000
markgerstein.bsky.social @markgerstein.bsky.social · 30/07/2025Posting my talk tomorrow at @emblebi.bsky.social (for the @ensembl.bsky.social group) lectures.gersteinlab.org/summary/Expl... AI Approaches for Understanding Brain Disorders: Exploring Intermediate Endophenotypes connecting Genotype to Diseases 020
markgerstein.bsky.social @markgerstein.bsky.social · 28/07/2025Posting my talk tomorrow at @geneticscam.bsky.social on AI for Brain Disorders lectures.gersteinlab.org/summary/Mode... Lots of new slides on characterizing brain developmental time series with sigmoids 020
markgerstein.bsky.social @markgerstein.bsky.social · 19/07/2025Posting my talk on Mon. on Cancer Genomics at the Institut Curie lectures.gersteinlab.org/summary/Char... Lots of new slides on using LLMs for "tumor boards" & for generating genomics workflows 000
markgerstein.bsky.social @markgerstein.bsky.social · 26/06/2025Posting my talk tomorrow at the AI4Chemistry Summit at NYU lectures.gersteinlab.org/summary/AI-f... Lots of new slides on computing small molecule Hamiltonians & predicting macromolecular misfolding 010
markgerstein.bsky.social @markgerstein.bsky.social · 23/06/2025Posting my talk tomorrow at the SCORCH consortium meeting lectures.gersteinlab.org/summary/Chro... Tools for brain single-cell analysis: ChronODE for series data and ASTRO for spatial data. 000
markgerstein.bsky.social @markgerstein.bsky.social · 09/06/2025Posting my talk tomorrow for the IMPACT-MH Consortium lectures.gersteinlab.org/summary/Digi... Digital Phenotyping from Wearables Using AI. Some new slides on using wearables to predict exercise lapses 000
markgerstein.bsky.social @markgerstein.bsky.social · 07/06/2025Also, we've summarized our analysis of @carlzimmer.com's genome out to Chr22. And we have synced the lectures more closely with readings, now trying to reference the great ISL book as much as possible (statlearning.com) 000
markgerstein.bsky.social @markgerstein.bsky.social · 07/06/2025School's out for the summer, & I've finally got around to cleaning up the website for my class on biomedical data science (gersteinlab.org/courses/452) I've been teaching this course for >25 years. This year, we've posted lots of new lecture videos. 100
markgerstein.bsky.social @markgerstein.bsky.social · 27/05/2025Liked the visual effect of @newyorker.com's recent "Double Cover" 000
markgerstein.bsky.social @markgerstein.bsky.social · 15/05/2025Posting my talk tomorrow at the @broadinstitute.org's Stanley Center lectures.gersteinlab.org/summary/Expl... Exploring Intermediate Endophenotypes connecting Genotype to Diseases 010
markgerstein.bsky.social @markgerstein.bsky.social · 06/05/2025Posting my talk today at the @ucirvine.bsky.social center for Neural Circuit Mapping lectures.gersteinlab.org/summary/SCZ-... . Lots of slides on using AI approaches for Schizophrenia, Alzheimer's & ADHD, including some new ones on analyzing AD imaging. 000
markgerstein.bsky.social @markgerstein.bsky.social · 04/05/2025Posting my talk on Mon. for the Frontiers in Computational Biosciences series at @UCLA lectures.gersteinlab.org/summary/Bett... . Lots of new slides on creating digital phenotypes from wearable devices & relating them to genetics and on quantum computing 000
markgerstein.bsky.social @markgerstein.bsky.social · 21/04/2025Thoughts on @carlzimmer.com's Airborne blog.gerstein.info/2025/04/thou... Great book about an overlooked mode of disease transmission, now prominent because of the pandemic 000
markgerstein.bsky.social @markgerstein.bsky.social · 14/04/2025Thinking about Summer: Abstract screen patterns in the Sound (More: www.flickr.com/photos/mbgmb...) 040
