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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

markgerstein.bsky.social @markgerstein.bsky.social · 18/06/2026

Finished @carlzimmer.com's genome this year too, doing X & Y. Great thanks to the TFs (Andy Chu, Suchen Zheng, Michelle Yu, Anna Su & Weihao Zhao) for putting everything together & the @yalecbb.bsky.social, @yaledatascience.bsky.social & @yalembb.bsky.social students for participating!!

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 05/05/2026

[1/2] Serena Tuytschaevers is a first-year CBB PhD student who earned both her bachelor’s and master’s degrees in Bioinformatics from the Rochester Institute of Technology. Her research interests focus on human genetics and drug discovery.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 14/04/2026

Caroline Sullivan and Xin Xin, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check the post below for more details.

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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

Muzumdar Lab @muzumdarlab.bsky.social · 10/04/2026

8/ This was a close collaboration with @krishnaswamylab.bsky.social @yalecbb.bsky.social with help from #KenLoh #RichardKibbey @yalemed.bsky.social. Special thanks to @damonrunyon.org @lustgarten.org @yalecancer.bsky.social for critical funding support. #CancerBiology

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 07/04/2026

Yihan Liu and Zhiyuan Cao, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check the post below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 30/03/2026

Emily Johns and Kexing Li, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check the post below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 23/03/2026

Kira Glasmacher and Yihan Liu, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check the post below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 23/03/2026

[1/4] Alma Dubuc is a first-year CBB PhD student who earned her bachelor’s degree in biology, mathematics, and physics, as well as a master’s degree in biology and bioinformatics, from the École Normale Supérieure de Lyon in France.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 16/03/2026

Erica Stutz and Gunalan Natesan, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check the post below for additional details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 09/03/2026

Yuan Gao and Sam Fenske, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, please check below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 02/03/2026

Andres Cordoba and Zhaochen Ye, @YaleCBB Ph.D. students, are presenting their selected scientific journals this week, additional details can be found below.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 24/02/2026

Haley Zhang and Inna Cohen, @YaleCBB Ph.D. candidates, will be presenting this week on their selected scientific articles.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 23/02/2026

[1/5] Antonia Panescu is a first-year CBB student who received an integrated master's degree in Biochemistry from the University of Oxford.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 16/02/2026

Yuntian Liu and Younjoon Chung, @YaleCBB Ph.D. candidates, will be presenting this week on their selected scientific articles.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 09/02/2026

Lucy Zheng and Kevin Jin (@YaleCBB Ph.D. candidates) will be presenting their selected scientific articles during this week's CBB journal club. Please check the post below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 03/02/2026

The CBB Journal Club series is beginning this week. Christine Dien and Lisa Chen (@YaleCBB Ph.D. candidates) will lead the session by presenting selected scientific articles. Please check the post below for additional details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 27/01/2026

Chang Lu, Anna Su, and Suchen Zheng, Ph.D. candidates in @YaleCBB, will be presenting the final RIP talk of the school year. Please see the details below for more information.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 23/01/2026

[1/2] Giacomo Marino is a first-year CBB PhD student who earned his bachelor’s degree from Brown University, where he double majored in neuroscience and computer science. His research interests focus on genomic foundation models and large language models.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 12/01/2026

Jenel Armstrong and Burhan Sabuwala, @YaleCBB Ph.D. candidates, will be presenting their RIP talks this week

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 05/01/2026

Happy new year! @YaleCBB PhD students will resume weekly Research-in-Progress (RIP) talks, followed by Journal Club (JC) presentations. A Ram and Noah Yann Lee, @YaleCBB PhD candidates, will be presenting their RIP talks this week.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 18/12/2025

[1/4] Jon Mallen is a first-year CBB PhD student who earned his bachelor’s degree in Applied Mathematics - Biology from Brown University. His research focuses on developing analytical methods for multiplexed single-cell multi-omics data and emerging data modalities.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 15/12/2025

Suchen Zheng and Dingyao Zhang, @YaleCBB Ph.D. candidates, will be presenting their RIP talks this week. Please check the post below for more details.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 08/12/2025

Ao Huang, @YaleCBB Ph.D. candidate, will be presenting his RIP talk on "Epigenetic poising in immune response to vaccination”.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 01/12/2025

Tianyu Liu, @YaleCBB Ph.D. candidate, will be presenting his RIP talk on "Scientific Autonomous Generalist Agent".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 21/11/2025

[1/2] Gabrianne Ivey is a first-year CBB PhD student who earned her bachelor’s degree in Cell and Molecular Biology at Appalachian State University and her master’s degree in Mathematical Sciences at Clemson University.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 17/11/2025

Jessica Kasamoto and Weihao Zhao, @YaleCBB Ph.D. candidates, will be presenting their RIP talks this week. More details shared in the post below.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 10/11/2025

Harry Abiri and Cole Jensen, Yale CBB Ph.D. candidates, will be presenting their RIP talks on "Transformer-Based PLMs to Understand the Immune System Language" and “Inferring Naive B Cell Sequences from Clonal Lineages”.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 03/11/2025

Jess Graham and Andy Chu, Yale CBB Ph.D. candidates, will be presenting their RIP talks on "Mapping the Antigenic Landscape to Predict Immunotherapy Response in Renal Cell Carcinoma" and "Leveraging a Poisson Mixed-Effect Framework to Uncover Dynamic Single-Cell Expression QTLs".

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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

Steven Kleinstein @skleinstein.bsky.social · 31/10/2025

Interested in pursuing a PhD in Computational Biology and Biomedical Informatics (CBB) at Yale? Join us for a CBB PhD Virtual Open House Tuesday, November 11 | 8:00–9:00 PM ET 👉 Register here: yalesurvey.ca1.qualtrics.com/jfe/form/SV_... @yalecbb.bsky.social

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 29/10/2025

Curious about PhD life at Yale’s Computational Biology & Biomedical Informatics (CBB) program? 🧬💻 Join our Virtual Open House on Nov 11, 8–9 PM ET to hear from faculty, ask questions, and explore the program! 📍 Zoom | Register here: yalesurvey.ca1.qualtrics.com/jfe/form/SV_...

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 27/10/2025

Yunzhe Jiang, Yale CBB Ph.D. candidate, will be presenting his RIP talk on "Comprehensive Analysis of Pseudogene Expression in Human and Macaque Brains compared with Other Tissues".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 20/10/2025

Yuhang Chen, Yale CBB Ph.D. candidate, will be presenting her RIP talk on "Personalized Mapping of Allele-Specific Chromatin Accessibility at Single-Cell Resolution".

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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

Steven Kleinstein @skleinstein.bsky.social · 16/10/2025

Interested in pursuing a PhD in Computational Biology and Biomedical Informatics (CBB) at Yale? Join us for the CBB PhD Virtual Open House Tuesday, October 21 | 8:00–9:00 PM ET 👉 Register here: yalesurvey.ca1.qualtrics.com/jfe/form/SV_... @yalecbb.bsky.social

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 15/10/2025

[1/3] Join Us for the CBB PhD Virtual Open House Tuesday, October 21 | 8:00–9:00 PM ET | Zoom (link provided upon registration) Interested in pursuing a PhD in Computational Biology and Biomedical Informatics (CBB) at Yale?

yalesurvey.ca1.qualtrics.com

Qualtrics Survey | Qualtrics Experience Management

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 13/10/2025

Mingze Dong and Jake Sumner, Yale CBB Ph.D. candidates, will be presenting their RIP talks on "Understanding and Enhancing Mask-Based Pretraining towards Universal Biological Representations" and "Modeling Protein Polymers at Different layers of Coarse-Graining".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 06/10/2025

We're excited to introduce our incoming CBB PhD cohort! Each month, we'll spotlight a new student who has volunteered to share a bit about themselves.This month, we're pleased to feature Emilee Grisham, a first-year CBB PhD student.

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 29/09/2025

Kriti Agrawal and Andrew Jia, Yale CBB Ph.D. candidates, will be presenting their RIP talks on "Deciphering Disease Dynamics using Spatial Transcriptomics" and "Genomic predictors of recurrent pregnancy loss".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 24/09/2025

Ruiqi Li and Donglu Bai, @YaleCBB Ph.D. candidates, will be presenting their RIP talks on "Cluster-Independent Multiscale Marker Identification in Single-cell RNA-seq Data using Localized Marker Detector (LMD)" and "Joint Model of Cell-type Specific RNA and Protein Expression".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 15/09/2025

For this week's RIP talk, Wes Lewis, a CBB Ph.D. candidate, will present his research project on "Identifying Evolutionary Signatures in Popular Music".

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Yale Computational Biology and Biomedical Informatics (CBB) @yalecbb.bsky.social · 10/09/2025

With the start of the new academic year, Yale CBB PhD students will begin presenting at the weekly Research-in-Progress (RIP) talks and journal clubs (JC) Michelle Yu, a CBB Ph.D. candidate, will be presenting her RIP talk on "Using graph neural network to predict effects of genetic perturbations".

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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

HIPC @hipcproject.bsky.social · 03/04/2025

Exciting news!! We are happy to announce that we will have a HIPC Symposium at @aai.org on Tues, May 6th. HIPC will also have a Super Booth at #AAI2025 along with @iedb.bsky.social and the iAKC Project. Check out the full Symposia list, and see you there! 🔗: immunology2025.aai.org/guest-sympos...

immunology2025.aai.org

Guest Symposia - IMMUNOLOGY2025™

Information and details about Guest Symposia to be presented at IMMUNOLOGY2025™!

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Reposted by Yale Computational Biology and Biomedical Informatics (CBB)

David van Dijk @vandijklab.bsky.social · 18/04/2025

What if LLMs could “read” & “write” biology? 🤔 Introducing C2S‑Scale—a Yale and Google collab: we scaled LLMs (up to 27B!) to analyze & generate single‑cell data 🧬 ➡️ 📝 🔗 Blog: research.google/blog/teachin... 🔗 Preprint: biorxiv.org/content/10.1...

research.google

Teaching machines the language of biology: Scaling large language models for next-generation single-cell analysis

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