Sign in

Liz Tseng

@magdoll.bsky.social
1.6K followers 48 following 113 posts

Product manager @PacBio / RNA / bioinformatics / aerialist & pole dancer / opinions are my own and do not reflect views of my employer

PostsRepliesMedia
Liz Tseng @magdoll.bsky.social · 21/07/2026
New to @pacbio.bsky.social HiFi data? Want to learn more about long-read #bioinformatics? Want to know how to read methylation tags in BAM files? This is the bootcamp for you! Sign up to get access to recorded tutorials + live Q&A session. programs.pacb.com/l/1652/2026-...
010
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 26/05/2026
SPRQ-Nx chemistry is now shipping worldwide, bringing sub-$300 HiFi genomes to the Revio platform! This global rollout cuts sequencing costs by 30%, making it easier than ever to scale high-throughput workflows Full press release here: bit.ly/49HwmcL #SPRQNx #PacBio #HiFisequencing #Revio
0147
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 18/03/2026
PacBio is proud to partner with Basecamp Research to generate high-fidelity metagenomic data for the Trillion Gene Atlas, a landmark initiative to model biological data at the trillion-gene scale and accelerate AI-designed therapeutics. Learn more here: bit.ly/479RQh3 #PacBio #TrillionGeneAtlas
075
Reposted by Liz Tseng
Eric Topol @erictopol.bsky.social · 19/02/2026
Predicting when symptoms of Alzheimer's disease will occur with a single elevated p-tau217 blood test and a person's age, even 20+ years in advance @naturemedicine.bsky.social nature.com/articles/s41...
427477
Liz Tseng @magdoll.bsky.social · 24/11/2025
Subtle differences in repeat motifs can cause drastic diff in disease onset: using @pacbio.bsky.social PureTarget amp-free identifies non-canonical repeats and its ratio assoc. with disease onset for Spinocerebellar ataxia type 10 (SCA10) www.neurology.org/doi/full/10....
neurology.org
Novel ATXN10 Repeat Motif Patterns in Peruvian Families Modify Disease Onset | Neurology Genetics
ObjectivesSpinocerebellar ataxia type 10 (SCA10) is an autosomal-dominant disorder caused by intronic expansions of pentanucleotide repeats in the ATXN10 gene. While various repeat motifs have been de...
042
Liz Tseng @magdoll.bsky.social · 10/11/2025
PangyPlot: a new #bioinformatics tools for visualizing pangenomes that supports linear coordinates and large graphs. Applied to @pacbio.bsky.social HiFi genomes to visualize two cystic fibrosis-relevant region not possible to resolve with short read genomes. www.biorxiv.org/content/10.1...
061
Liz Tseng @magdoll.bsky.social · 06/11/2025
How does @pacbio.bsky.social long-read RNA-Seq help explain response difference through RNA splicing regulation in immunotherapy? Check out the Dec webinar with @olgaanczukow.bsky.social and Ryan Englander and I! www.the-scientist.com/long-read-rn...
the-scientist.com
Long-Read RNA Sequencing Reveals a Regulatory Role for Splicing in Immunotherapy Responses
Olga Anczukow and Ryan Englander discuss how transcriptome splicing affects immune system function in lung cancer.
041
Liz Tseng @magdoll.bsky.social · 05/11/2025
New @pacbio.bsky.social #bioinformatics spotlight video is up! SQANTI-QC: a multi-sample long-read RNA-Seq QC tool! Demo included. Check it out and give it a try! www.youtube.com/watch?v=83XL...
youtube.com
Using SQANTI-reads for long-read RNA-Seq quality control
YouTube video by PacBio
030
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 05/11/2025
A new multi-center study from the EMEA HiFi Solves Consortium shows the clinical research potential of HiFi. Combined with our latest informatics pipeline, HiFi identified 100% of clinically relevant variants across 11 complex regions, including those short reads missed. 👉 bit.ly/4oqMWCY
0102
Liz Tseng @magdoll.bsky.social · 27/10/2025
Wonder how @pacbio.bsky.social long read sequencing is transforming how clinical and translational labs approach genomics? Hear from panelists from Myriad Genetics, GeneDx, Karolina and Radboudumc discuss rare disease testing, carrier screening, and more! programs.pacb.com/l/1652/2025-...
030
Liz Tseng @magdoll.bsky.social · 23/10/2025
Want a rare look inside @pacbio.bsky.social facility and hear how customers use HiFi for HLA typing and PGx? We made a 6-min documentary this summer. Check it out! www.youtube.com/watch?si=nXb...
youtube.com
Advancing human health with HiFi long-read sequencing
YouTube video by PacBio
021
Reposted by Liz Tseng
Robert Aboukhalil @robert.bio · 09/10/2025
Just published an interactive article about a magical algorithm known as the Burrows-Wheeler Transform, which powers sequence alignment tools like bowtie and bwa: sandbox.bio/concepts/bwt It's also notoriously unintuitive so I'm hoping this article helps you build that intuition.
39829
Liz Tseng @magdoll.bsky.social · 09/10/2025
How does @pacbio.bsky.social long-read sequencing and AI interact to assess AAV genome integrity? Find out at this Catalent webinar on 10/29! event.on24.com/wcc/r/509468...
event.on24.com
Integrating DNA Sequencing and AI for AAV Genome Integrity
Wednesday, October 29, 2025 at 2:00 PM Eastern Daylight Time.
100
Liz Tseng @magdoll.bsky.social · 06/10/2025
Why it's good to incorporate @pacbio.bsky.social long-read bacterial WGS into routine hospital surveillance for AMR tracking: 540 multidrug-resistant Gram-negative bacterial genomes revealed extensive and previously missed plasmid-mediated transmission events. journals.asm.org/doi/10.1128/...
journals.asm.org
The dark matter of bacterial genomic surveillance—antimicrobial resistance plasmid transmissions in the hospital setting | Journal of Clinical Microbiology
Antimicrobial resistance (AMR) poses a significant threat to human health. Most AMR determinants are encoded extra-chromosomally on plasmids. Although current infection control strategies primarily fo...
021
Liz Tseng @magdoll.bsky.social · 15/09/2025
010
Liz Tseng @magdoll.bsky.social · 15/09/2025
How do you prep 1,000 @pacbio.bsky.social Kinnex bulk RNA-Seq samples consistently? With @sptlabtech.bsky.social Firefly for automation! Join this @selectscience.bsky.social webinar next week to hear about it! www.selectscience.net/webinar/auto...
selectscience.net
Automating large-scale isoform discovery at Seattle Children’s Genomics and Spatial Biology CoLab
Join Rebecca Martin, PhD, Scientific Lead of the Genomics and Spatial Biology CoLab at Seattle Children’s Research Institute, for an in-depth webinar on how automation is transforming long-read transc...
020
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 08/09/2025
The human #microbiome holds enormous potential, but only if we can see it clearly. Join this webinar to learn how #PacBio HiFi sequencing delivers accurate, high-resolution insights with 16S rRNA sequencing and shotgun metagenomics. Secure your spot: bit.ly/4mYmK1G
064
Liz Tseng @magdoll.bsky.social · 20/08/2025
If DNA sequencing technologies had dating profiles 😜🧪
010
Liz Tseng @magdoll.bsky.social · 19/08/2025
Learn from about @pacbio.bsky.social HiFi and then have a chance to WIN some!
040
Liz Tseng @magdoll.bsky.social · 14/08/2025
Rarely do I get this excited about a @pacbio.bsky.social Iso-Seq study! 🧠 Come hear how the Tripathy lab used long-read multiomics to study neuron development—finding new isoforms suggesting some non-coding ASD variants may disrupt splicing & protein function. programs.pacb.com/l/1652/2025-...
000
Liz Tseng @magdoll.bsky.social · 13/08/2025
AI saves elephants from being hit by trains in India. You can use AI for good! 🐘💫 timesofindia.indiatimes.com/india/ai-sav...
timesofindia.indiatimes.com
AI saves elephants: 6,592 safe elephant crossings on Tamil Nadu railway tracks; no fatalities in nine months | India News - Times of India
India News: Tamil Nadu Forest Department has successfully implemented an AI-powered early warning system to protect elephants crossing railway tracks in Madukkara.
020
Liz Tseng @magdoll.bsky.social · 07/08/2025
Just released @pacbio.bsky.social Kinnex-10x GEM-X single cell data for both Revio and Vega! Go check out the updated app note and dataset URL! App note: www.pacb.com/wp-content/u... Dataset: downloads.pacbcloud.com/public/datas...
pacb.com
083
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 28/07/2025
Project JAGUAR, led by the @sangerinstitute.bsky.social and Latin American researchers, aims to build the first immune cell atlas representing Latin American populations—addressing equity and ancestry in genomics. #PacBio is proud to support with #HiFiSequencing. Read the blog: bit.ly/4l63Kwz
bit.ly
Making genomics data more representative through Latin American research - Wellcome Sanger Institute Blog
Genomic research is lacking representative data, which limits our ability to understand diseases and develop treatments. To fix this, we need to prioritise local leadership, capacity building, and equ...
053
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 23/07/2025
#PacBio is contributing Iso-Seq data to the 1000 Genomes Long Read Sequencing Project using #Kinnex kits and the #Revio system. This data from 1,000 globally diverse samples will help advance transcript-level insights across populations. Press release here: bit.ly/4mdzHEe
173
Liz Tseng @magdoll.bsky.social · 10/07/2025
A once-in-a-decade bloom of Chanel the corpse flower (Amorphophallus Titanum) at the San Francisco Conservatory of Flowers and I caught the very tail end of its 48 hour blooming span! 🌸🌸🌷🌷
020
Liz Tseng @magdoll.bsky.social · 23/06/2025
Learn from the best @pacbio.bsky.social users on their tips and tricks! (fun fact: I interviewed Lutz but I'm behind the camera so you won't see me ;>)
031
Reposted by Liz Tseng
Eric Topol @erictopol.bsky.social · 22/06/2025
Spotlight on the gut-brain axis A rapid expansion of new discoveries and knowledge lays the foundation for a new era in medicine erictopol.substack.com/p/the-gut-br...
erictopol.substack.com
The Gut-Brain Axis Takes Center Stage
A rapid expansion of new discoveries and knowledge lays the foundation for a new era in medicine
18519143
Liz Tseng @magdoll.bsky.social · 12/06/2025
Deepest long-read RNA-Seq dataset for one single cell line, multiple time points + replicates using @pacbio.bsky.social Kinnex RNA kit! Wissel et al. show that Kinnex can be used for isoform quantitative analyses: www.biorxiv.org/content/10.1...
biorxiv.org
0111
Liz Tseng @magdoll.bsky.social · 10/06/2025
Really loving this live demo of our @pacbio.bsky.social Vega benchtop sequencer by the one-and-only Sterling Maurer. Vega is so simple...probably I can do it (but I shouldn't XD) www.youtube.com/watch?v=wK90...
youtube.com
PacBio Vega: Benchtop HiFi Sequencer Demo (ASHG 2024)
YouTube video by PacBio
021
Liz Tseng @magdoll.bsky.social · 05/06/2025
If you're in the San Francisco bay area and is a 10x single-cell/spatial user, @pacbio.bsky.social will be at the UCSF Gladstone 10x Symposium next week! I'll be there too! Come learn how to power up your 10x data with long reads! tinyurl.com/2mev7pj6
tinyurl.com
UCSF and Gladstone Institutes Single Cell and Spatial Discovery Symposium
010
Liz Tseng @magdoll.bsky.social · 27/05/2025
Next week! Come learn how @pacbio.bsky.social HiFi enables IGH genotyping and near-full-length TCR/BCR sequencing for immunotherapy research! programs.pacb.com/l/1652/2025-...
010
Reposted by Liz Tseng
Jeremy Wilkinson @jewilki.bsky.social · 16/05/2025
So fantastic to see an all women panel at #PacBioPRISM today moderated by @magdoll.bsky.social. #HiFi #longreads @pacbio.bsky.social
073
Liz Tseng @magdoll.bsky.social · 07/05/2025
@pacbio.bsky.social instrument lounge at PRISM San Francisco event today! Great talks this morning and now we’re moving into parallel workshops.
072
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 11/04/2025
🔍 Another blurry challenge is here! It's Find Your Focus Friday. Guess what's hidden in the image to earn an entry. Tag a friend for double the entries! With #PacBio, #TheresHiFiForThat — clear answers from the start. T&Cs: bit.ly/3O3AfhD
031
Liz Tseng @magdoll.bsky.social · 21/03/2025
It's @pacbio.bsky.social fairy tale Friday! Once upon a time, you do lots of PCRs to screen different ataxia genes. Now with PureTarget, you can do 20 genes at once, get repeat lengths, repeat sequences, and even methylation patterns!
142
Reposted by Liz Tseng
Jeremy Wilkinson @jewilki.bsky.social · 19/03/2025
If you're looking for a way to streamline your #PacBio full-length 16S workflow or just wanting to try it out before investing in purchasing barcoded FL 16S primer stocks, check out the #ZymoResearch Quick-16S Full-Length Library Prep Kit to get started! #longread #microbiome
051
Liz Tseng @magdoll.bsky.social · 19/03/2025
New Kinnex achievement unlocked! 194Gb with Revio SPRQ! Well deserved @udelaware.bsky.social
272
Reposted by Liz Tseng
Eric Topol @erictopol.bsky.social · 12/03/2025
In case you've forgotten about measles induced immune amnesia www.nbcnews.com/health/healt... w/ @michaelmina.bsky.social @virusesimmunity.bsky.social
nbcnews.com
Measles virus targets certain immune cells in the body: What to know about complications
The virus targets certain types of immune cells in the body, destroying them in the process.
8263102
Liz Tseng @magdoll.bsky.social · 11/03/2025
"Don't just focus on gene expressions". Instead, you might find common mis-splicing patterns that aren't derived from SF mutations, is associated with prognosis, and may have therapeutic potential. Intrigued? Register for @pacbio.bsky.social webinar next week! programs.pacb.com/l/1652/2025-...
020
Liz Tseng @magdoll.bsky.social · 10/03/2025
Sunday cafe reading! I sort of “won” this book from a recent @pacbio.bsky.social internal event and I’m greatly enjoying it! So much to think about on pursuing greatness, offering hospitality, and relationship management.
030
Reposted by Liz Tseng
Eric Topol @erictopol.bsky.social · 09/03/2025
We've known about the gut-brain axis. Now we're learning about the gut-brain-lung axis whereby food intake can trigger an immune response in the airway. www.cell.com/neuron/fullt...
1540779
Liz Tseng @magdoll.bsky.social · 04/03/2025
@pacbio.bsky.social Vega in the flesh today at Stanford!! 😁
0133
Liz Tseng @magdoll.bsky.social · 04/03/2025
@pacbio.bsky.social Vega benchtop demo + office hour this afternoon at Stanford! I'll be there! Come hang out with us and check out Vega :-)
030
Liz Tseng @magdoll.bsky.social · 03/03/2025
Bay area folks! Want a chance to see the new @pacbio.bsky.social benchtop Vega in person? Chat with me and other PacBio folks about HiFi sequencing? We're hosting a Vega showcase + office hour tomorrow at Stanford! Come say hi! programs.pacb.com/l/1652/2025-...
071
Liz Tseng @magdoll.bsky.social · 03/03/2025
Happy Monday! Let's start this week with fairy tales! ONCE UPON A TIME extracting high molecular weight (HMW) DNA was difficult. But now, with @pacbio.bsky.social Nanobind extraction kits. you get HMW DNA in, and beautiful long reads -> genome assemblies out! 💫⭐🧪🧬 www.pacb.com/products-and...
144
Liz Tseng @magdoll.bsky.social · 28/02/2025
A coworker sent me this this morning and cracked me up so much! 🧬🧪 xkcd.com/3056/
030
Reposted by Liz Tseng
Eric Topol @erictopol.bsky.social · 28/02/2025
AIR-BORNE, @carlzimmer.com's new book, is an enthralling deep dive into airborne diseases. The colossal failure to recognize that #COVIDisAirborne is thoroughly reviewed. Our podcast erictopol.substack.com/p/carl-zimme... Open-access, with transcript and full video, + relevant links
erictopol.substack.com
Carl Zimmer: Air-Borne and the Big Miss With Covid
One of the top science journalists of our time discusses his new book
27734238
Liz Tseng @magdoll.bsky.social · 27/02/2025
AAV/gene therapy folks! Join me, @formbio.bsky.social and others in North Carolina next month to discuss all things AAV - including how @pacbio.bsky.social long-read AAV sequencing can help characterize and improve AAV vector design! www.formbio.com/2025-aav-sum...
formbio.com
AAV Innovation Summit 2025
Join gene therapy professionals for a half-day summit on advancing AAV therapeutics through AI, genome integrity and vector design.
040
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 25/02/2025
Current AIRR-seq methods have limitations. At #AGBT25, Melissa Smith showcases how #PacBio highly accurate long reads provide the resolution needed to fully understand immune responses—paving the way for better immunotherapy and precision genomic medicine. #AGBTGM
098
Reposted by Liz Tseng
PacBio @pacbio.bsky.social · 25/02/2025
Genotype matters. At #AGBT25, Melissa Smith explores how germline-targeted immunogens and IGH variation impact immune response. Highly accurate #PacBio long reads help reveal critical insights for immunogenomics and precision medicine. #AGBTGM
085