Karel "CaCO3" Berka @krapnik.bsky.social · 17/08/2026Nicméně, nezapomínejte na to, že tresty mají své rozsahy a také se u trestání výrazně přihlíží k trestní historii pachatelů a recidivisté mají typicky tvrdší tresty. Oproti tomu tahle aplikace Vás staví do pozice porovnávání právnického "sférického kuřete ve vakuu". 000
Karel "CaCO3" Berka @krapnik.bsky.social · 17/08/2026A aplikace karelberka.github.io/trestni-dile... pak na pozadí tyto hlasy sesbírá... (k ovládání stačí šipky a mezerník)karelberka.github.ioTrestní Dilemata ČR | Srovnávač trestných činů a soudní praxeInteraktivní srovnávač závažnosti trestných činů v ČR podle trestního zákoníku a reálné soudní praxe. Otestujte svůj právní a etický úsudek. 100
Karel "CaCO3" Berka @krapnik.bsky.social · 17/08/2026Vaši volbu pak můžete srovnat s trestním zákoníkem a s webem jaktrestame.cz od Jakuba Drápala, Kláry Svitakové, Michala Šoltése a Jana Cibulky. A pak si můžete vybrat další náhodnou dvojici a další…jaktrestame.czJakTrestame.czZajímá vás, jaké tresty v České republice ukládáme? Ať už jde o profesní nebo osobní důvody, neexistuje místo, kde byste se dozvěděli více o tom, jak trestáme. Vedle statistik o uložených trestech zde... 100
Karel "CaCO3" Berka @krapnik.bsky.social · 17/08/2026O víkendu jsem si chtěl vyzkoušet napsat aplikaci na trošku jiný typ výzkumu, než je u chemika obvyklé, a tak jsem přichystal Trestní dilemata. Princip je jednoduchý - dostanete na výběr mezi dvěma delikty a musíte si vybrat, který je podle Vás závažnější. media.giphy.com/media/v1.Y2l...giphy.comWeighing Seth Meyers GIF by Late Night with Seth Meyers - Find & Share on GIPHYGIPHY image by Late Night with Seth Meyers 100
Karel "CaCO3" Berka @krapnik.bsky.social · 14/08/2026All the Mankind was good as well (as an inofficial prequel to Expanse) 010
Karel "CaCO3" Berka @krapnik.bsky.social · 26/07/2026Sad news to #CompChem Pavel Jungwirth passed away… www.uochb.cz/en/news/811/...uochb.czPavel Jungwirth, a leading figure in the world of chemistry, has diedThe Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences is deeply saddened to announce that on Thursday 23 July 2026, our outstanding colleague, teacher, mentor and… 6153
Karel "CaCO3" Berka @krapnik.bsky.social · 19/07/2026there is no secondary contact with membrane… just one TM-helix 010
Karel "CaCO3" Berka @krapnik.bsky.social · 08/07/2026beware - once you start reading it, you might have problem to stop… 000
Karel "CaCO3" Berka @krapnik.bsky.social · 30/06/2026added feature to show MO-LCAO combination on the fly… 000
Karel "CaCO3" Berka @krapnik.bsky.social · 30/06/2026If you want to play some biochemical boardgame on summer holidays - you can try my AA-Dobble - karelberka.github.io/amino-acid-d... #proteins #chemskykarelberka.github.ioAA-Dobble: Biogenní aminokyseliny 010
Reposted by Karel "CaCO3" BerkaRoland Dunbrack 🏳️🌈 @rolanddunbrack.bsky.social · 27/06/2026Part 2 may be of most use to experienced users of AlphaFold and related programs. It covers the origin of the AF scores in benchmarking protein structure prediction (GDT-TS, LDDT, TM score) and the AF versions of these scores (pLDDT, PAE, ipTM, ipSAE, LIS). www.youtube.com/watch?v=WW_X...youtube.com 0244
Reposted by Karel "CaCO3" BerkaRoland Dunbrack 🏳️🌈 @rolanddunbrack.bsky.social · 27/06/2026I gave a workshop on AlphaFold & related programs @ the University of Utah. Part 1 covers protein structure prediction before/after AlphaFold & deep learning neural networks. Part 2 covers the math behind the scores. Part 3 covers PyMOL & the webservers. youtube.com/@rolanddunbr... 27328
Karel "CaCO3" Berka @krapnik.bsky.social · 25/06/2026Antigravity (or other agentic AI who wrote code) is cool tool for making science edu apps for computational chemistry. For instance, I vibecoded this interactive atomic orbital simulator this afternoon based on discussion with student… karelberka.github.io/orbital-simu... (it is in Czech now)karelberka.github.io3D Simulátor Atomových Orbitalů 360
Karel "CaCO3" Berka @krapnik.bsky.social · 15/06/2026nice #alphafoldology gym for alternative structure prediction 040
Reposted by Karel "CaCO3" BerkaStephanie Wankowicz @stephanieaw.bsky.social · 15/06/2026sampleworks allows you to hold the experimental loss fixed and benchmark structure predictors head-to-head, or freeze the model and sweep guidance methods + hyperparameters. github.com/diff-use/sam...github.comGitHub - diff-use/sampleworks: Framework for modified sampling from biomolecular generative modelsFramework for modified sampling from biomolecular generative models - diff-use/sampleworks 122
Reposted by Karel "CaCO3" BerkaIona Brand @mikeiona.bsky.social · 07/06/2026Did you ever see the "Not The Nine O'Clock News" sketch? m.youtube.com/watch?v=asUy...m.youtube.comNot the Nine O'Clock News - Monty Pythons worshipersYouTube video by ZuzuzuLooker 616336
Karel "CaCO3" Berka @krapnik.bsky.social · 05/06/2026jedna by byla fajn u detskeho hriste v Kozeluzske… 010
Karel "CaCO3" Berka @krapnik.bsky.social · 04/06/2026another #alphafoldology tool - DeltaDiff - for prediction of mutant protein structures. 000
Karel "CaCO3" Berka @krapnik.bsky.social · 04/06/2026pipeline for #alphafoldology pipeline for identification of PPIs 000
Reposted by Karel "CaCO3" BerkaProtein Data Bank in Europe (PDBe) @pdbeurope.bsky.social · 03/06/2026🧬 Claude isn't the only AI that can query PDBe. PDBe MCP Servers work with other AI clients too, such as Google Antigravity. You only need one protocol for any MCP-compatible AI. 🎥 Watch the install walkthrough 👇 📦 github.com/PDBeurope/PDBe-MCP-Servers #PDBe #MCP #GoogleAntigravity #AI 082
Karel "CaCO3" Berka @krapnik.bsky.social · 27/05/2026MD simulations are my favorite - otherwise I leave it up to Grammarly… 020
Karel "CaCO3" Berka @krapnik.bsky.social · 20/05/2026any chance to beat human serum albumin assay one? ;) 000
Karel "CaCO3" Berka @krapnik.bsky.social · 19/05/2026ja nemluvim o matematice, ale snalyticke chemii 110
Karel "CaCO3" Berka @krapnik.bsky.social · 19/05/202611,6 se zaokrouhluje nahoru. Dokonce v analytice nas kdysi davno ucili, ze se zaokrouhluje na suda cisla, takze pak by vychazelo na dvanactku i 11,5… ;) 120
Karel "CaCO3" Berka @krapnik.bsky.social · 11/05/2026Power of Boron lecture by Michael Londesborough from IIC AV CR at @fchupol.bsky.social www.youtube.com/live/j3PvXHe... #chemskyyoutube.comMichael Londesborough - Boron PowerYouTube video by Katedra fyzikální chemie UPOL 010
Karel "CaCO3" Berka @krapnik.bsky.social · 10/05/2026wow, interesting data, but that “chemical and material scientists”divorce less than “clergy” is a bit unexpected… ;) #chemsky 031
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Sebastian Hiller on integrative NMR #pps2026 042
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Andrea Soranno on IDP biophysics #ppps2026 041
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Ahrum Son on protein structural changes in alzheimer’s disease #pps2026 021
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 07/05/2026And great opening of Prague Protein Spring by David Baker @nd-bakerlab.bsky.social #pps2026 232
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 07/05/2026Next speaker is Michele Vendruscolo on dugging undruggable #pps2026 041
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026Eugene Shakhnovich on chaperonines helping bacteia to resist antibiotics #pps2026 141
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026Patricia Clark on silent mutations and protein folding #pps2026 031
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026On neurodegeneration by Nikolay Dokholyan #pps2026 021
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026Alena Khmelinskaia @akhmelinlab.bsky.social promoting @rosettacommons.bsky.social -Con after her amazing talk on design of protein nanostructures #pps2026 042
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026Sameer Velankar @pdbeurope.bsky.social @ebi.embl.org ready to his talk on AI in biology #pps2026 031
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 08/05/2026Gennady Verkhivker on AI and allostery in protein kinases #pps2026 051
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Basile Wicky @ethz.ch on protein design #pps2026 041
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Tomas Pluskal @pluskal-lab.org on plants, their products and AI #pps2026 0113
Reposted by Karel "CaCO3" BerkaVojtech Spiwok @spiwokv.bsky.social · 09/05/2026Agnes Toth-Petroczy @tothpetroczylab.bsky.social on IDPs #pps2026 032
Reposted by Karel "CaCO3" BerkaRCSB Protein Data Bank @rcsbpdb.bsky.social · 07/05/2026New Syntax for PDB DOIs for Entries Released After July 21, 2027 PDB entries deposited after July 20, 2027 will only be assigned extended PDB IDs and will follow a new DOI syntax.rcsb.orgNew Syntax for PDB DOIs for Entries Released After July 21, 2027PDB entries deposited after July 20, 2027 will only be assigned extended PDB IDs and will follow a new DOI syntax. 021
Reposted by Karel "CaCO3" Berkamacomix @macomix.bsky.social · 05/05/2026Babička je do neděle v aukci. Držte palce, nebo si ji radši vydražte ;) www.obrazyvaukci.cz/polozka/maco... 1293
Karel "CaCO3" Berka @krapnik.bsky.social · 05/05/2026yeah, sending student’s certificates feedback automatically after filling course did that to me as well… 000