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Jonas Verhellen

@jonasverhellen.bsky.social
1.7K followers 2.1K following 37 posts

Theoretical physicist with a PhD in neuroscience. Postdoc in protein-protein interactions. Into art, science, and innovation. Currently: Copenhagen 🇩🇰 Previously: Oslo 🇳🇴, London 🇬🇧, Brussels 🇧🇪

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Reposted by Jonas Verhellen
Nathalie M. Grob @nathalie-grob.bsky.social · 21/11/2024
Are you curious to see what my team and I are up to? Check out our group website here: peptide-discovery.ethz.ch
peptide-discovery.ethz.ch
Homepage
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Reposted by Jonas Verhellen
Marco Hernández @mhernandez.bsky.social · 09/06/2025
Our team is looking for a visual journalist to report, design and code stories with us. You'll be able to learn from our skilled colleagues. I joined this team in 2021 and have continued to learn ever since. It's definitely a great work environment. Learn more about it or apply here: bit.ly/4kG33L6
The New York Times visual journalism story thumbnails
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Jonas Verhellen @jonasverhellen.bsky.social · 01/06/2025
Made it to @intconfchemstr.social.edu.nl.ap.brid.gy just in time for the Mike Lynch Award (after about 6 hours of public transport).
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The New Yorker @newyorker.com · 25/05/2025
Academic freedom in the United States has found itself periodically under siege, but the current attacks from the federal government raise a new level of alarm. nyer.cm/u405qvQ
 “I’ve studied McCarthyism’s impact on higher education for 50 years. What’s happening now is worse.” -Ellen Schrecker, historian
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Jonas Verhellen @jonasverhellen.bsky.social · 04/05/2025
Big news! I've received a DKK 2.97 million postdoc grant from the Lundbeck Foundation to kick off my independent research at the University of Copenhagen! lundbeckfonden.com/news/young-t... #neuroscience #postdoc #LundbeckFoundation #mentalhealth
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Jonas Verhellen @jonasverhellen.bsky.social · 07/04/2025
I was very happy to discover Copenhagen has a statue for @janhjensen.bsky.social! 🦉🦉🦉
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Serge Belongie @serge.belongie.com · 30/03/2025
Would you present your next NeurIPS paper in Europe instead of traveling to San Diego (US) if this was an option? Søren Hauberg (DTU) and I would love to hear the answer through this poll: (1/6)
docs.google.com
NeurIPS participation in Europe
We seek to understand if there is interest in being able to attend NeurIPS in Europe, i.e. without travelling to San Diego, US. In the following, assume that it is possible to present accepted papers ...
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Serge Belongie @serge.belongie.com · 26/02/2025
Learn more about #NordicAIR at our new website: nordicpartnership.ai (3/3)
nordicpartnership.ai
Home | Nordic Partnership
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Reposted by Jonas Verhellen
Ai2 @ai2.bsky.social · 25/02/2025
Introducing olmOCR, our open-source tool to extract clean plain text from PDFs! Built for scale, olmOCR handles many document types with high throughput. Run it on your own GPU for free—at over 3000 token/s, equivalent to $190 per million pages, or 1/32 the cost of GPT-4o!
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Nathan Lambert @natolambert.bsky.social · 25/02/2025
Come work with me! We are looking to bring on more top talent to our language modeling workstream at @ai2.bsky.social building the open ecosystem. We are hiring: * Research scientists * Senior research engineers * Post docs (Young investigators) * Pre docs job-boards.greenhouse.io/thealleninst...
job-boards.greenhouse.io
The Allen Institute for AI
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Jonas Verhellen @jonasverhellen.bsky.social · 14/02/2025
Happy Valentine's day! And for all of us who need some extra love today - especially the NIH folks - here's a happy oxytocin molecule! 💞🧪
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Fernanda Duarte @fjduarte.bsky.social · 23/01/2025
1 week left to apply for this fully funded #compchem PhD opportunity part of the EU Marie Curie Doctoral Network, “CATALOOP” 🗓 Deadline: 31/01/2025 📥 How to Apply: submit your application via the university portal shorturl.at/nHyAo
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Jan H. Jensen @janhjensen.bsky.social · 16/01/2025
New preprint from my group: Enhancing Chemical Synthesis Planning: Automated Quantum Mechanics-Based Regioselectivity Prediction for C-H Activation with Directing Groups doi.org/10.26434/che... #compchem
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Jorge Bravo Abad @bravo-abad.bsky.social · 01/01/2025
Active-learning ML approach for catalytic free-energy calculations by Liu et al.: An MLP “committee” and constrained MD refine data, capturing reaction pathways 10^6× faster than ab initio. Their scheme ensures robust coverage of transitions and near-DFT precision. pubs.acs.org/doi/10.1021/...
pubs.acs.org
CatFlow: An Automated Workflow for Training Machine Learning Potentials to Compute Free Energies in Dynamic Catalysis
Dynamic effects of catalysts play a crucial role in catalytic reactions, necessitating the incorporation of statistical sampling and understanding of the impact of dynamic structures in free energy calculations. However, the complexity of catalytic systems poses challenges in effectively exploring the vast configurational space effectively. In this work, we propose CatFlow, an automated workflow for training machine learning potentials (MLPs) to compute free energies of catalytic reactions. CatFlow combines constrained molecular dynamics (MD) simulation with concurrent training of MLPs and sequential calculation of free energies with well trained MLPs. By rapidly generating reliable MLPs, CatFlow facilitates rigorous free energy calculations, enabling the determination of the reaction profiles in an end-to-end manner. We showcased the capabilities of CatFlow by investigating the activation of O2 catalyzed by Pt clusters and demonstrated the effects of phase transition on the activities of the catalytic reaction. CatFlow offers an efficient and automated solution for studying the catalytic elementary reaction processes. It reduces the need for human intervention and provides researchers with a powerful tool to investigate free energies of dynamic catalysis.
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Arne Elofsson @handle.invalid · 27/12/2024
Please forward to good candidates jobportal.ku.dk/videnskabeli...
jobportal.ku.dk
Two PhD or Postdoc positions in computational off-target analysis of siRNA and small peptides
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Jonas Verhellen @jonasverhellen.bsky.social · 25/12/2024
I used to share this video on the other place every year at Christmas ... time for a new tradition. Happy holidays BlueSky! youtu.be/Etflv7R6NKA?...
youtu.be
Studio 60 O Holy Night
YouTube video by Oceandreams313
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Simon Olsson @smnlssn.bsky.social · 23/12/2024
Come join us on an exciting joint PhD project on ML for protein function with @kailalab.bsky.social -- We are looking for a strong quantitative candidate with prior experience in ML. The position is based in Gothenburg and is fully funded for 5 years. www.chalmers.se/en/about-cha...
chalmers.se
Vacancies
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Jonas Verhellen @jonasverhellen.bsky.social · 20/12/2024
🔬 More #SciComm! 🔬 This week’s figure shows how severe mental disorders affect the entire body. 🧠 While these disorders are known for their impact on brain functioning (blue), patients are also disproportionately affected by physical diseases (red). Details 👇!
 Severe Mental Disorders Affect The Entire Body. Severe mental disorders are characterised by their detrimental effect on brain functioning (shown in blue), but patients suffering from these diseases are also disproportionately affected by a range of other diseases (shown in red). For each cluster of diseases comorbid with schizophrenia or bipolar disorder, we highlight a representative organ and provide the 95% confidence interval mortality risk ratio in incident and prevalent schizophrenia cases versus the general population.
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Jonas Verhellen @jonasverhellen.bsky.social · 09/12/2024
🔬 Hello, BlueSky! Time for some more #SciComm! 🔬 Last week’s (procrastination 🙈) figure illustrates the frequency spectrum of genetic risk factors for Schizophrenia: common variants (blue), protein truncating variants (red), and copy number variations (green). More 👇!
A figure illustrating the frequency spectrum of genetic risk factors for schizophrenia, with three categories represented by distinct colors: blue for common variants, red for protein-truncating variants, and green for copy number variations (CNVs). Each category is paired with a representative gene: C4A for common variants, SETD1A for protein-truncating variants, and NRXN1 for CNVs.
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Jonas Verhellen @jonasverhellen.bsky.social · 29/11/2024
🔬 Hello, BlueSky! Time for some #SciComm! 🔬 This week’s figure illustrates the onset and progression of schizophrenia, integrating symptom intensity (blue line), environmental and genetic risk factors (red boxes), and key disease milestones (white boxes) as they unfold across age.
A graph illustrating the typical onset and progression of schizophrenia over time, with age on the x-axis and symptom intensity on the y-axis. A blue line represents symptom intensity, starting low in early childhood, increasing during adolescence, and peaking in early adulthood. Red boxes along the timeline highlight risk factors such as genetic predispositions and environmental triggers. White boxes mark key milestones in disease progression, including the prodromal phase, first psychotic episode, and chronic stages. A green-shaded area indicates a "window of opportunity" for early intervention, occurring before symptom intensity sharply increases.
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Janine George @molecularxtal.bsky.social · 13/11/2024
Still believe that at the core of every exceptional research group are researchers who are both bright and kind and who value teamwork. #chemsky
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Jonas Verhellen @jonasverhellen.bsky.social · 13/11/2024
Cannot overstate how stellar of a job @amelierocks.bsky.social did the past three days! An absolute masterclass. Calm, composed, always human. 💯👏
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Jonas Verhellen @jonasverhellen.bsky.social · 28/06/2024
🚀 Excited to announce that "Bayesian Illumination: Inference and Quality-Diversity Accelerate Generative Molecular Models" is now available! Key takeaway: Bayesian Illumination is 100x more effective than either genetic algorithms or deep generative models. 📊
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Jonas Verhellen @jonasverhellen.bsky.social · 07/10/2023
Over the summer, I wrote a blog post series based on my PHD thesis. ✍️ So, whether you are a fellow academic, a curious mind, or simply looking to expand your knowledge, check it out! I'll be republishing announcements here from time to time. ✨ Link: jonas-verhellen.github.io/blog-thesis-...
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