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Jonathan Kagan

@jkagan1.bsky.social
939 followers 30 following 219 posts

Scientist at Boston Children's Hospital, Professor at Harvard Medical School, Husband, Father

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Jonathan Kagan @jkagan1.bsky.social · 12h
@tuftsmedschool.bsky.social #bacteria #microbiology
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Jonathan Kagan @jkagan1.bsky.social · 12h
A marvelous profile of the incomparable Ralph Isberg, my scientific grandfather and one whose training record and discoveries influence so much in the field today. A must read for anyone interested in how to do this job right--focus on the people. now.tufts.edu/2026/10/13/l...
now.tufts.edu
The Lab That Launched a Generation of Microbiologists
Over 40 years, Ralph Isberg at Tufts School of Medicine has trained dozens of scientists who are illuminating what makes bacterial pathogens tick.
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Jonathan Kagan @jkagan1.bsky.social · 08/10/2026
Highly recommend!
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Jonathan Kagan @jkagan1.bsky.social · 02/10/2026
Cheers Daniel! Great discoveries ahead!
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Reposted by Jonathan Kagan
Daniel Fisch @danielhfisch.bsky.social · 02/10/2026
Yesterday was a special day in my career: I got to open the door to my own research group (and for the first time in my life to my own office 😂)! Thank you to @gimminstitute.bsky.social for giving me this opportunity, it's exciting to finally be here!
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Jonathan Kagan @jkagan1.bsky.social · 25/09/2026
Thank you to Boston Children’s Hospital for highlighting our recent publication, describing: Receptor Free Signal Transduction. www.childrenshospital.org/newsroom/med...
childrenshospital.org
Receptor-free signal transduction: Discovery of new method for inflammatory cell communication opens door for therapeutic opportunities in treating autoimmune diseases | Boston Children's Hospital
BOSTON, MA [Sept. 23, 2026] — Our understanding of how cells interact with each other has been driven for decades by the central concept of receptor-mediated
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Jonathan Kagan @jkagan1.bsky.social · 24/09/2026
Thanks Kat!
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Reposted by Jonathan Kagan
Harmit Singh Malik @harmitmalik.bsky.social · 23/09/2026
Then and Now: The Rapid Evolution of Harmit Malik www.the-scientist.com/then-and-now...
the-scientist.com
Harmit Malik Dives Into Viral Evolution and Speciation | The Scientist
Fascinated by evolution and driven by curiosity, Malik studies everything from viruses to Drosophila and, like his research subjects, is constantly reinventing himself.
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Thank you!
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Thank you Kate!
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Thank you Ivan!
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Cheers to you Daniel and all your supporting collaborators!
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
bsky.app/profile/dani...
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
So proud of Daniel Fisch and his outstanding collaborators: Vaani Ohri, Eleni Anastasakou, Lucia Wesemann, Joon Choi and Katherine Lindblad @danielhfisch.bsky.social @danielhfisch.bsky.social @BostonChildrens @harvardmed A description of this work by Daniel Fisch @danielhfisch.bsky.social is below.
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Mechanistic characterization revealed the receptor-free state of MyD88 as the key determinant of long term NF-kB activation and secondary response gene expression. Do other examples of receptor-free signaling transduction exist?
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
We found that MyD88 must be released from active TLRs in order to mature into a signaling competent myddosome. A genetic screen identified TRAM (a classic regulator of TRIF) as necessary for MyD88 release.
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
Today, the Toll-like Receptors reveal a new mechanism of signal transduction: Receptor-Free Signal Transduction. www.nature.com/articles/s41...
nature.com
TRAM promotes Toll-like-receptor-free myddosome signal transduction - Nature
TRAM is a regulator of myddosome assembly through dissociating MyD88 from the TLR–TIRAP complex to enable myddosome maturation and durable downstream signal transduction.
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Jonathan Kagan @jkagan1.bsky.social · 23/09/2026
A metabolic regulator in neurons controls allergic inflammation. Fascinating and important study by Sokol and colleagues key insight to a growing health problem. Kudos to the authors. www.cell.com/immunity/ful... @carriesokol.bsky.social
cell.com
Sensory neuronal mTORC1 kinase signaling establishes neuroimmune memory that initiates allergic immunity
How cumulative environmental allergen exposures are encoded by peripheral sensory neurons to shape immune responsiveness is unclear. Zhu et al. show that protease allergens induce an mTORC1-dependent,...
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Jonathan Kagan @jkagan1.bsky.social · 22/09/2026
www.nature.com/articles/s41...
nature.com
Molecular definition of the endogenous Toll-like receptor signalling pathways - Nature
Myddosomes, in which MyD88 forms barrel-like scaffold structures for effector protein recruitment and activation, contain proteins that act at all stages and regulate all effector responses ...
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Jonathan Kagan @jkagan1.bsky.social · 22/09/2026
In 2024, we found small MyD88 clusters called proto-myddosomes forming around TLRs (link below). These clusters are released to build large signaling myddosomes. Is MyD88 release important for TLR signaling? To answer this question, we need to identify a regulator. Stay tuned...
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Jonathan Kagan @jkagan1.bsky.social · 22/09/2026
A hallmark of the TLR pathways is the expression of primary and secondary response genes, which are subject to distinct levels of regulation. But all instructive information in the nucleus emanates from the receptors. What happens at the receptor to control these events?
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Jonathan Kagan @jkagan1.bsky.social · 21/09/2026
The famous oscillations of NF-kB that govern TLR-induced gene expression are well-documented. What controls these oscillations and are they important for inflammatory cytokine production?
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Jonathan Kagan @jkagan1.bsky.social · 21/09/2026
For over 20 years, the Toll-like Receptor pathway has been divided into proteins that control MyD88 and TRIF signaling events. Are these pathways really separate entities, with the only common receptor-proximal node being the receptor itself?
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Jonathan Kagan @jkagan1.bsky.social · 02/09/2026
Change the textbooks. Trans-splicing as a means to diversify the proteome. Many congrats to Ruaidhri Jackson and Olivia Venezia on this remarkable discovery. www.nature.com/articles/s41...
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Reposted by Jonathan Kagan
Nature Reviews Immunology @natrevimmunol.nature.com · 24/08/2026
Can immunology still surprise itself?
dlvr.it
Can immunology still surprise itself?
Nature Reviews Immunology, Published online: 24 August 2026; doi:10.1038/s41577-026-01351-wThe discoveries that have transformed immunology often seem obvious in retrospect. Yet none began as an inevitable destination. They began with observations that did not fit, assumptions that somebody challenged, or questions that nobody yet realized were important. Discovery was the outcome. Surprise was the process.
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Jonathan Kagan @jkagan1.bsky.social · 19/08/2026
Highly recommend!
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Reposted by Jonathan Kagan
Caetano Reis e Sousa @reisesousalab.bsky.social · 19/08/2026
Hope you enjoy this short piece, which came out yesterday. Some thoughts I’ve been musing on for a while about why adaptive immunity evolved. Read it for free at rdcu.be/fAO5P
rdcu.be
Why adaptive immunity?
Nature Reviews Immunology - Adaptive immunity is indispensable to vertebrates, yet most living organisms defend themselves perfectly well without it. Here, I ask why somatically diversified antigen...
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Jonathan Kagan @jkagan1.bsky.social · 15/08/2026
Highly recommend!
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Reposted by Jonathan Kagan
Ivan Zanoni @lozanzi.bsky.social · 14/08/2026
#DAMPsPower!! Excited to share the 💥new 💥 review @ Science Immunology that @marcodigioia & I wrote about the immunological activities played by host-derived oxidized lipids in controlling infections & tumorigenesis! doi.org/10.1126/scii...
doi.org
Regulation of inflammation by oxidized lipids
Lipids generated by oxidative stress and their effects on immunity and cancer are reviewed.
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Jonathan Kagan @jkagan1.bsky.social · 12/08/2026
Highly recommend!
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Reposted by Jonathan Kagan
Kranzusch Lab @kranzuschlab.bsky.social · 12/08/2026
The shared principles of human and bacterial antiviral immunity An honor to highlight remarkable discoveries from many labs over the past 12 years that unite previously disparate fields of how animal cells and prokaryotes defend against viruses. www.nature.com/articles/s41... rdcu.be/fzwyB
nature.com
Shared principles of human and bacterial antiviral immunity - Nature
The Review describes shared ancient, conserved mechanisms between human antiviral immunity and bacterial anti-phage systems, outlining universal principles of pathogen sensing, signalling and effector...
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Reposted by Jonathan Kagan
Caetano Reis e Sousa @reisesousalab.bsky.social · 06/08/2026
Delighted that our work led by @marianapdc.bsky.social has just been published in @cp-cellreports.bsky.social. Read it for free at www.cell.com/cell-reports...
cell.com
CXCR4 marks homeostatically activated dendritic cells in the steady state and in cancer
Pereira da Costa et al. define CXCR4 as a marker of dendritic cell activation in the steady state and in cancer, which is absent in activation elicited by Toll-like receptors or type I interferon rece...
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Jonathan Kagan @jkagan1.bsky.social · 05/08/2026
Additional work on this topic: www.cell.com/cell-reports...
cell.com
Inflammasomes within Hyperactive Murine Dendritic Cells Stimulate Long-Lived T Cell-Mediated Anti-tumor Immunity
Inflammasome activation in dendritic cells (DCs) leads to pyroptosis or hyperactivation. Zhivaki et al. show that in contrast to pyroptotic DCs, hyperactive DCs stimulate durable anti-tumor immunity t...
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Jonathan Kagan @jkagan1.bsky.social · 05/08/2026
Data nicely complements work on the hyperactive DC state that drives tumor immunity in the young and old. Regardless of the name used, DC activation state is a key to the cancer puzzle. www.cell.com/cell/fulltex...
cell.com
Correction of age-associated defects in dendritic cells enables CD4+ T cells to eradicate tumors
Adjuvants known as hyperactivators can correct age-associated defects in dendritic cells, enabling anti-tumor T cell responses in old and young mice. The protective immunity elicited by hyperactive de...
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Jonathan Kagan @jkagan1.bsky.social · 05/08/2026
Evidence continues to accumulate that dendritic cell activation state is as important as antigens in anti-tumor immunity. A new study confirms CCR7 DCs as key drivers of defense. www.cell.com/immunity/ful...
cell.com
CCR7+ activated dendritic cells are essential for spontaneous and immunotherapy-driven anti-tumor immunity
Dendritic cells (DCs) can acquire distinct functional states. To examine how different DC states orchestrate anti-tumor immunity, Koufaki et al. develop mouse models to label and ablate CCR7+ DCs and ...
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Jonathan Kagan @jkagan1.bsky.social · 04/08/2026
Highly recommend!
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Jonathan Kagan @jkagan1.bsky.social · 27/07/2026
Highly recommend!
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Reposted by Jonathan Kagan
Kat Barnett @katbarnett.bsky.social · 27/07/2026
Had so much fun writing this commentary for #msphere! Grateful for the opportunity to write about work that’s shaped my perspective on innate immunity and RNA virus infection journals.asm.org/doi/10.1128/...
journals.asm.org
mSphere of Influence: Damage in RNA virus infection—a feature or a bug? | mSphere
How does the body recognize viral infection? How do viruses engage the immune system during replication? These seemingly simple questions led me to study pattern recognition, a concept first proposed ...
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Jonathan Kagan @jkagan1.bsky.social · 18/07/2026
Thank you Kat!
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Thank you Phil. Love working with you!
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Thank you Ivan!
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Tweetorial x.com/jkagan1/stat...
x.com
Jonathan Kagan (@jkagan1) on X
A new PAMP, a new innate immunity principle and a new preclinical application. I am so pleased to share our study on STING activation mechanisms in health and disease. Led by the fantastic Stephanie R...
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
A new PAMP, a new innate immunity principle and a new preclinical application. I am so pleased to share our study on STING activation mechanisms in health and disease. Led by the fantastic Stephanie Ragland, follow the link below for a summary of all we learned. www.cell.com/immunity/ful...
cell.com
Purine and pyrimidine-based bacterial cyclic dinucleotides egress the phagosome and activate the innate immune sensor STING
Innate immune recognition of bacteria is thought to center on cell-surface or endosomal pattern recognition receptors such as TLRs. Ragland et al. identify an intraphagosomal cyclic dinucleotide (CDN)...
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
In summary, a phagosomal CDN transporter system enables STING detection of diverse bacterial CDNs, including pyrimidine-based CDNs. STING joins the TLRs as a common sensor of diverse bacteria. It is not “only” a pathogen sensor.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Pyrimidine-containing CDNs are thought to be too small to adequately engage the STING binding pocket. We solved the crystal structure of STING with 2′3′- or 3′3′-cUMP-AMP. These structures revealed distinct CDN-STING interactions, as compared to purine-based CDNs.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Using a library of bacteria producing diverse CDNs, we identified a new PAMP. 2′3′-cUMP-AMP and 3’3’-cUMP-AMP are the first pyrimidine-based STING ligands. The former is active in diverse animal species.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
We determined if our engineered, 3′3′-c-di-AMP-producing non-pathogens (“dacA+”) could be killed (to optimize safety) and still stimulate STING-driven anti-tumor immunity. Multiple tumors, including a GEMM for liver cancer, were treated with dacA+ but not control bacteria.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Several CDN transporters have been reported. Intriguingly, some of these transporters, including SLC46A2 and LRRC8A have endosomal localizations. We found that both mediate STING activation to phagosomal, CDN-producing bacteria.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
E. coli engineered to produce 3′3′-c-di-AMP (“dacA+”) stimulated STING after bacteriolysis in a mature phagolysosome, suggesting phagosomal CDN transporters are involved.
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Jonathan Kagan @jkagan1.bsky.social · 17/07/2026
Given the paradigm that cytoplasmic sensors are strictly pathogen sensors, our finding that CDN-producing non-pathogens stimulate STING was surprising. Yet, we found that even pathogens like L. monocytogenes could stimulate STING without its membrane-perturbing factors.
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