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Jose M Jimenez-Gomez

@jimenezgomez.bsky.social
484 followers 509 following 19 posts
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Reposted by Jose M Jimenez-Gomez
Plant Physiology @plantphys.bsky.social · 19/09/2026
A noncoding SNP in ELF3 alters ELF3β expression and confers adaptation of Arabidopsis to a continental climate (Christopher R Buckley , Anna Philippova , Alexandre Fournier-Level , Michael J Haydon) doi.org/10.1093/plph... #PlantScience @aspbofficial
doi.org
A noncoding SNP in ELF3 alters ELF3β expression and confers adaptation of Arabidopsis to a continental climate
A naturally occurring variant in the Arabidopsis core clock gene EARLY FLOWERING 3 alters temperature responsiveness and has been selected for in regions o
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Reposted by Jose M Jimenez-Gomez
Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 31/08/2026
📣 Metabolomics expert position at @ceplas.bsky.social part part of the CEPLAS Academic Expert Career Programme (tenure-track). karriere.hhu.de/index.php?ac...
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Chris Buckley @cbuckley.bsky.social · 23/07/2026
I'm excited to share our paper on natural variation in the Arabidopsis circadian clock, published in @plantphys.bsky.social with Anna Philippova, @adaevo.bsky.social and @hikemaydon.bsky.social 🌱🕐. Thread below (🧵1/6) academic.oup.com/plphys/artic...
academic.oup.com
A noncoding SNP in ELF3 alters ELF3β expression and confers adaptation of Arabidopsis to a continental climate
A naturally occurring variant in the Arabidopsis core clock gene EARLY FLOWERING 3 alters temperature responsiveness and has been selected for in regions o
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Reposted by Jose M Jimenez-Gomez
Devang Mehta🌱🧬 @mehta-lab.com · 21/04/2026
Someone in the Arabidopsis/clock community seems to deeply dislike my work on research culture. Just want to say: whoever you are, please write & debate me directly instead of cowering behind anonymous grant reviews that threaten my students’ work. (2nd year in a row)
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Sascha Laubinger @saschalaubinger.bsky.social · 19/04/2026
Back in the field: Eneza @enezer.bsky.social, Maria, and this year’s students are on Spiekeroog again in 2026, continuing to phenotype wild Arabidopsis in 2026. The dataset grows, and the story continues: Watching climate shape plants - in real time, in real environments.
Photo of Maria and Eneza during field workPhoto of Eneza measuring Arabidopsis plants in the fieldStudents phenotype wild Arabidopsis plants.A typical Arabidopsis thaliana plant growing in the dunes of Spiekeroog
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Reposted by Jose M Jimenez-Gomez
Daniel Croll @danielcroll.bsky.social · 03/04/2026
Resequencing hundreds or thousands of individuals from the same species has become routine... but processing all those genomes efficiently? Still a headache! Here's my solution that used to be lab-internal but that I am happy to share: crolllab.github.io/genomepanel_...
crolllab.github.io
Home – genomepanel_nf
Nextflow pipeline for reference genome mapping, SNP calling and quality checks on large genome panels
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Patsy “Resistance Kitty” Evans Ph.D. @drharmony.net · 03/04/2026
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 14/03/2026
1/11 🔥 New preprint alert 🔥 We wanted to know what plants in the wild really care about. So we asked them 🎤. Here is what we learned: “Biotic-response networks are an important organizer of the transcriptome in wild Arabidopsis thaliana populations” www.biorxiv.org/content/10.6...
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Jose M Jimenez-Gomez @jimenezgomez.bsky.social · 07/03/2026
🌱 New preprint out on bioRxiv! How do plants sense seasonal changes in day length? In our new study, we profiled high resolution (2h) RNA seq time courses in tomato across three photoperiods to uncover how light duration shapes gene expression dynamics. Summary in next post...
biorxiv.org
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Brian Dilkes @briandilkes.bsky.social · 23/02/2026
Preprint!!!! This is the result of an ongoing collaboration between us and the genomics core to make genetics cheap and easy. A synergy between library prep and analytical approaches. This one hinges on recognizing 1. that DNA molecules are shaped by evolution and 2. we have friends everywhere.
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Dan Kliebenstein @spicybotrytis.bsky.social · 17/02/2026
Did you know that most knockouts in Arabidopsis actually do have phenotypes and aren't some redundancy situation? All you have to do is measure in multiple tissues in multiple environments and then the phenotypes show up. Redundancy was an assumption never tested.
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Felix Martinez @laskotillean.bsky.social · 28/01/2026
Malate matters! Especially in tomato fruit, where malate reaches levels that would shut down “normal” metabolism. Tomato solves this with BTPC, part of a malate-insensitive Class-2 PEPC complex.
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 20/12/2025
Chromosome-scale Solanum pennellii and Solanum cheesmaniae genome assemblies reveal structural variants, repeat content and recombination barriers of the tomato clade www.biorxiv.org/content/10.64898/20…
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jcpozito.bsky.social @jcpozito.bsky.social · 24/11/2025
Congrats to RootResponse lab members (CBGP) for this review in JXB DOI: 10.1093/jxb/eraf520 how root traits, microbiome interactions, and epigenetic regulation play a role in plant heat stress resilience, stressing the need for lab approaches that closely reflect field-conditions
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 24/11/2025
We (Nordborg & Weigel labs) need input on the next generation of genome browsers & data download modes for the #Arabidopsis #1001GenomesPlus project. We have now a curated collection of over 500 long read genomes. Please help us by filling out this questionnaire: docs.google.com/forms/d/e/1F...
docs.google.com
Next generation of 1001 Genomes Plus browser and data download
Please indicate all features you would like to see in a browser that displays features of completely sequenced Arabidopsis thaliana genomes
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Sebastian Soyk @sebastiansoyk.bsky.social · 21/11/2025
New preprint from the lab on @biorxivpreprint.bsky.social! We show how SEPALLATA MADS-box genes in tomato functionally diverged to regulate inflorescence and floral organ development while maintaining redundant functions in conferring floral meristem identity. www.biorxiv.org/content/10.1...
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IHSM La Mayora UMA-CSIC @ihsmumacsic.bsky.social · 14/11/2025
🗣️ Today, José Jiménez Gómez from @cbgpmadrid.bsky.social came to visit us in Málaga to share his research with a great talk entitled “Metabolic adaptations towards salt tolerance in Arabidopsis plants from the Cape Verde Islands” as part of our #IHSMLaMayoraSeminars series
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veroglez.bsky.social @veroglez.bsky.social · 15/11/2025
Amazing talk by @jimenezgomez.bsky.social at @ihsmumacsic.bsky.social
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Angela Hancock @ahancock.bsky.social · 08/11/2025
I recently moved my lab to Purdue University and am looking for graduate students. We are working at the interface of population genomics, quantitative genetics and functional genomics to understand how plants adapt to extreme environments. Reach out if you would like to discuss potential projects.
PhD advert
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Dan Kliebenstein @spicybotrytis.bsky.social · 09/11/2025
There are lots of answers out there that are beautiful because the truth of the system is beautiful. If I find one of these beautiful facts, it doesn’t make me brilliant. Just right place and right time. True scientific heroes acknowledge that fact.
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IHSM La Mayora UMA-CSIC @ihsmumacsic.bsky.social · 07/11/2025
📋 Join us on Friday 14th for a fascinating seminar with the researcher José Jiménez Gómez (@cbgpmadrid.bsky.social, Centro de Biotecnología y Genómica de Plantas). Don't miss it! 🕓 9:30 AM 📍 IHSM La Mayora Auditorium More information here! ⬇️
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Mike Haydon 🌱 🌾 🧬 ⏰ @hikemaydon.bsky.social · 17/10/2025
I’m very pleased to share our latest work, led by the talented @cbuckley.bsky.social as part of his PhD. It’s our first attempt at studying #circadian rhythms in wheat with the help of some great collaborators @jesshyles.bsky.social @adaevo.bsky.social et al. #plantsci 🌾⏰ 1/7 doi.org/10.1111/nph....
doi.org
A circadian transcriptional subnetwork and EARLY FLOWERING 3 control timing of senescence and grain nutrition in bread wheat
Circadian clocks control daily and seasonal timing of physiology and development. Because of their influence on photoperiodic flowering, variants in circadian clock genes have been selected for ph...
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Jose M Jimenez-Gomez @jimenezgomez.bsky.social · 01/10/2025
Save the date, 1-3 July 2026, for the XVIII Plant Molecular Biology Meeting #RBMP2026 in Bilbao. Check out the website for updates rbmp2026.com/RBMP/en/info
rbmp2026.com
XVIII Meeting of Plant Molecular Biology
I am going to attend the event
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Reposted by Jose M Jimenez-Gomez
PlantEvolution 🌱🌾 @plantevolution.bsky.social · 20/08/2025
Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis! www.nature.com/articles/s41...
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Femke de Jong @plantenzo.bsky.social · 15/07/2025
Like I mentioned last week I like it when plants find a way against all odds. It is not just the perseverance and adaption. But also, that we can learn something from how those pioneering plants manage to survive against all odds. 🧵1/3 🧪 #PlantScience
plantenzo.net
Getting a little salt tolerance
Plants in a saline environment have no other choice than to adapt. Spanish and French researchers show one of those adaptions in the newly published research “Parallel evolution of salinity toleran…
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Jose M Jimenez-Gomez @jimenezgomez.bsky.social · 12/07/2025
We just published our work in #ScienceAdvances "Parallel evolution of salinity tolerance in Arabidopsis thaliana accessions from Cape Verde Islands" www.science.org/doi/10.1126/... Short summary and credits follow:
graphical abstract from the article: Parallel evolution of salinity tolerance in Arabidopsis thaliana accessions from Cape Verde Islands
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Felix Martinez @laskotillean.bsky.social · 12/07/2025
Our story about salinity tolerance in the Cape Verde islands is out in Science Advances! @science.org. Two independent mutations in the same gene conferred salt resistance to Arabidopsis plants! Check it out here! www.science.org/doi/10.1126/...
science.org
Parallel evolution of salinity tolerance in Arabidopsis thaliana accessions from Cape Verde Islands
Plants from the Cape Verde Islands evolved parallel mutations to protect from high salinity.
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Felix Martinez @laskotillean.bsky.social · 12/07/2025
These were my very first experiments done at @cbgpmadrid.bsky.social. I still remember the excitement of @jimenezgomez.bsky.social and me when observing the plates and the shocking phenotype! Thanks to all the authors for the work and so happy to continue working on this!
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Silvia Manrique @tank-silvia.bsky.social · 12/07/2025
🧪Very timely, the paper from the story that @jimenezgomez.bsky.social explained us during #SEG2025 was published yesterday. Congrats to all the team and specially first co-author @laskotillean.bsky.social! Beautiful story! 🫶🏻
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Plant Physiology @plantphys.bsky.social · 23/05/2025
The quantitative effect of seed production triggers the end of flowering in tomato (María Jesús López-Martín , Cristina Ferrándiz , Concepción Gómez-Mena) doi.org/10.1093/plph... #PlantScience
doi.org
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Kaisa Kajala @kaisakajala.bsky.social · 01/05/2025
Our work on MYBs and WRKY regulating suberin in tomato exodermis is now out in @jxbotany.bsky.social! 🍅 doi.org/10.1093/jxb/... 👩‍🔬 @leonardojo.bsky.social @riannekluck.bsky.social @marianasartur.bsky.social Sara Buti, Alex Cantó-Pastor @bradylabs.bsky.social 🌱 #PlantScience
doi.org
Transcription factors SlMYB41, SlMYB92 and SlWRKY71 regulate gene expression in the tomato exodermis
Abstract. Root barrier cell types, like the endodermis and exodermis, are crucial for plant acclimation to environmental stresses. Deposition of suberin, a
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David Lowry @davidlowry.bsky.social · 10/04/2025
Twenty years ago this month Kevin Wright and I set out on an 18,000 mile journey from Durham, NC across North America to collect monkeyflowers. The seeds from that trip (my third rotation project) have given rise to major advances and scores of scientific publications over the past two decades.
Composite image of map of North America, with route of travel. On the side are pictures of myself, Kevin, and a blooming monkeyflower.
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Jose M Jimenez-Gomez @jimenezgomez.bsky.social · 17/04/2025
Lots of #arabidopsis mixed with the #tulips in the #JardinBotanico in #Madrid. I asked the local expert Carlos Alonso-Blanco: they likely came from Holland with the bulbs or the soil 🤦🏻
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Rodrigo Reis @rodrigoreislab.com · 12/04/2025
Amazing resource for the Arabidopsis and plant community www.cell.com/cell/fulltex...
cell.com
An Arabidopsis single-nucleus atlas decodes leaf senescence and nutrient allocation
A comprehensive single-nucleus transcriptomic atlas of Arabidopsis across multiple tissues enables the quantification of leaf cell aging state at a single-cell level, highlighting the senescence-relat...
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Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 26/03/2025
Lots of cool new features at the BAR ePlant Browser, such as ecotype SNP data mapped to protein sequence and structure. Check it out at: bar.utoronto.ca/eplant/ #PlantScience @bar-plantbio.bsky.social
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E. Han Tan @ekhtn.bsky.social · 20/03/2025
Today’s weird potato flower is one that looks like fasiflora (fa) mutants in tomato, but as usual, nothing is known about this mutation in tuber bearing Solanum. Pub with the fa mutant in tomato: www.researchgate.net/profile/Beat...
Leafy potato flower.
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Leonie Moyle @speciationlab.bsky.social · 18/03/2025
Solanum galapagense (Galápagos tomato/“tomatillo”) Isla Santiago, Galápagos
a cheery green plant grows out of volcanic rock. rock formations and moody clouds glower in the distance.
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American Society of Plant Biologists @aspbofficial.bsky.social · 11/03/2025
#ASPBPlantCellTuesday #InBrief #ICYMI
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Yasin Dagdas @plantophagy.bsky.social · 07/02/2025
Dear #plantsci community, PLEASE HELP or RT! We are looking for a leaf specific promoter for a tissue specific CRISPR experiment in Arabidopsis. Any suggestions?
media.tenor.com
spongebob holding a megaphone with the words we need help behind him
ALT: spongebob holding a megaphone with the words we need help behind him
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Sebastian Soyk @sebastiansoyk.bsky.social · 31/01/2025
🚨Job alert: We are looking for a #phd student to join us @unil.bsky.social to study evolution & function of gene regulatory sequences in the context of crop domestication using genome editing and imaging 🌱🍅🧬. #plantscience #scijobs #plantscijobs. Apply here: tinyurl.com/mrdpm5yf
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Cristina Ferrándiz @cristicris.bsky.social · 31/01/2025
I❤️PhD defense days. We welcome our youngest doctor, Maria Jesus Lopez Martín, who has done an excellent job studying the end of flowering in tomato. Here with proud supervisors @conchagm.bsky.social and @cristicris.bsky.social, the PhD committee and all her mates at @ibmcp.bsky.social
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Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 24/01/2025
Fun fact I did not know: A significant proportion of liver cells are polyploid! shalevlab.weizmann.ac.il/wp-content/u...
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Jeremy Berg @jeremymberg.bsky.social · 21/01/2025
Bluetorial-A dream and a bit of a nightmare Serving as Editor-in-Chief at Science was fascinating. I greatly enjoyed working with talented and committed editorial, news, graphics, and production staff. But the inside look into scientific publishing and AAAS was also deeply disillusioning.
media.tenor.com
a cartoon says hey everybody an old man 's talking while bart simpson looks on
ALT: a cartoon says hey everybody an old man 's talking while bart simpson looks on
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 27/12/2024
Announcing a curated collection of long-read genomes for Arabidopsis thaliana: The 1001 Genomes Plus Project. Currently 453 unique accessions/almost 600 assemblies. Interested in contributing? Please contact us! #plantscience www.biorxiv.org/content/10.1...
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Dan Kliebenstein @spicybotrytis.bsky.social · 23/12/2024
Mariele Lensink (coadvised with @grey-monroe.bsky.social) has conducted a detailed analysis of natural variation in Salicylic acid response in the Bay x Sha RIL population biorxiv.org/cgi/content/.... Aka Thesis Chapter 1.
biorxiv.org
Trans-regulatory loci shape natural variation of gene expression plasticity in Arabidopsis
Organisms regulate gene expression in response to environmental cues, a process known as plasticity, to adjust to changing environments. Research into natural variation and the evolution of plasticity...
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Otto Mas 🎙️ @ottomas.es · 25/12/2024
Son hormigas resolviendo un problema geométrico y es para flipar en colores.
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Ignacio_Rubio-Somoza @ignaciorubiosomoza.bsky.social · 17/12/2024
#PlantScience Come join us!, The MoRE Lab (shorturl.at/CUwM4) is open to support PhD candidates for these programs (shorturl.at/FQBaI and shorturl.at/FmwiF), early postdocs (shorturl.at/KVyVv) and senior (shorturl.at/zkk7l), check eligibility and get in touch!, help us spread the word, please!
shorturl.at
Molecular Reprogramming and Evolution | CRAG | Centre for research in agricultural Genomics
The main scope of our research is in understanding how plants interrelate with their surrounding environment. We are especially interested on the molecular mechanisms that allow plants to perceive and cope with the presence of pathogen threats. Our main line of research focuses on the cellular events triggered by the intracellular presence of pathogen-derived RNA silencing suppressors and its consequences both for plant development and defence reprogramming. Another line of research in the lab focuses on studying the evolution of hormone-mediated plant-microbe communication.
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Chenxin Li, PhD @chenxinli2.bsky.social · 17/11/2024
Online course contents for Experimental Design & Analysis w/ R at UC Davis by Dr. Dan Runcie (listed as Plant Sciences 205 at UC Davis). I took it in 2017 when I was a PhD student, one of the best classes I have ever taken! Highly recommend. deruncie.github.io/PLS205_course/ #Stats #PlantScience
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 13/11/2024
The Salk Institute shared the sad news that Prof. Joanne Chory passed away yesterday due to complications from Parkinson’s disease. She was one of the most influential biologists of our time. And this is how I will remember Joanne, expertly guiding us on where to go. Joanne, we will miss you! ❤️
Two people on a punting boat
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