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Tianrun Jerry Li

@jerrytli.bsky.social
41 followers 28 following 9 posts

Postdoc at University of Oxford. Plant pathology

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Reposted by Tianrun Jerry Li
Gitta Coaker @gittacoaker.bsky.social · 12/08/2026
nlp receptor identified in lettuce, different from the receptor in brassicas; convergent evolution in different plant families. www.pnas.org/doi/10.1073/...
pnas.org
A lettuce receptor-like kinase recognizes the highly conserved heptapeptide motif within microbial Nep1-like proteins | PNAS
Plants rely on cell surface immune receptors to detect microbial patterns and initiate effective defense responses. Although the Asteraceae family ...
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Reposted by Tianrun Jerry Li
Nature Plants @natplants.nature.com · 24/07/2026
"Programmable design of synthetic plant immune receptors for pathogen protein recognition" www.science.org/doi/10.1126/...
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Reposted by Tianrun Jerry Li
Chenxin Li, PhD @chenxinli2.bsky.social · 21/06/2026
Trans-kingdom delivery of aphid-derived small RNAs into Arabidopsis thaliana modulates plant immunity From: www.biorxiv.org/content/10.6... #PlantScience
biorxiv.org
Trans-kingdom delivery of aphid-derived small RNAs into Arabidopsis thaliana modulates plant immunity
Herbivore insects are on an evolutionary tug-of-war with plants. An important part of the plant-herbivore insect interaction is the exchange of molecules, in particular proteins (in the form of effect...
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Reposted by Tianrun Jerry Li
Diana Gómez De La Cruz @dianagdlc.bsky.social · 05/06/2026
So proud to see this story finally out!🎉 We added new data since our previous preprint—transgenic barley plants with an engineered immune receptor that fights off two fungal pathogens at once. Short 🧵 and link to the original preprint thread on X👇 www.science.org/doi/10.1126/...
science.org
Molecular mimicry of a pathogen virulence target by a plant immune receptor
Plants and animals respond to pathogen attack by mounting innate immune responses that require intracellular nucleotide-binding leucine-rich repeat (NLR) proteins. These immune receptors detect pathog...
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Reposted by Tianrun Jerry Li
Marcel Dickmanns | 🌿❄️🔬 @madic.bsky.social · 14/05/2026
It's out! 🥳 In situ architecture of #plasmodesmata - plant cytoplasmic bridges - by #cryoET. 📝 Paper: www.nature.com/articles/s41... 🧵 Thread: bsky.app/profile/madi... #teamtomo #proteomics #AlphaFold
nature.com
In situ architecture of plasmodesmata in Physcomitrium patens resolved by cryo-electron tomography - Nature Plants
Using cryo-electron tomography, the authors reveal how plasmodesmata (plant cytoplasmic bridges) are gated by cell wall remodelling and how helical protein assemblies scaffold internal membranes, with...
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Reposted by Tianrun Jerry Li
Nature Biotechnology @natbiotech.nature.com · 05/05/2026
A single-cell screening platform accelerates functional genetics in plants - @sattelylab.bsky.social go.nature.com/4n8wzLv
go.nature.com
A single-cell screening platform accelerates functional genetics in plants - Nature Biotechnology
A pooled, cell-based, genetic screening platform in plants is used for the functional analysis of cytokinin signaling proteins.
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Reposted by Tianrun Jerry Li
Alba Moreno Pérez @alba-mp.bsky.social · 05/05/2026
Excited to share our new preprint! We explore how experimental context influences immune responses triggered by elf18 and flg22 in Arabidopsis. Huge thanks to @gittacoaker.bsky.social for her guidance and support, and to Hanxu Sha for her help on this project. www.biorxiv.org/content/10.6...
biorxiv.org
Experimental Context Shapes PRR-Mediated Immune Output Sensitivity in Arabidopsis
Pattern recognition receptors (PRRs) mediate plant immune responses by detecting extracellular immunogenic patterns, including microbe-associated molecular patterns (MAMPs). PRR signaling is commonly assessed using assays such as reactive oxygen species (ROS) bursts, cytosolic calcium influx, mitogen-activated protein kinase (MAPK) activation, and seedling growth inhibition (SGI), which are performed in distinct experimental systems, including seedlings grown on artificial media and soil-grown rosettes. Here, we systematically compare receptor kinase immune outputs triggered by the bacterial MAMPs elf18 and flg22 in Arabidopsis thaliana seedlings and rosettes across a range of concentrations. Rosettes exhibited greater sensitivity than seedlings in ROS assays, whereas cytosolic calcium responses measured using the Aeqcyt/pMAQ2 reporter were stronger in seedlings, correlating with reduced reporter transcript accumulation in rosette tissue. MAPK activation was consistently stronger in rosettes, whereas SGI assays revealed higher sensitivity to elf18 than flg22 in seedlings despite flg22 inducing stronger early signaling outputs. Together, these results demonstrate that canonical PRR-mediated immune outputs are differentially sensitive to experimental context and should not be interpreted as interchangeable measures of immune activation. These findings highlight the importance of considering experimental conditions when comparing immune responses across assays and developmental stages. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R35GM136402 Fundación Alfonso Martín Escudero, https://ror.org/02897ye82
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Reposted by Tianrun Jerry Li
Chenxin Li, PhD @chenxinli2.bsky.social · 24/04/2026
Really interesting paper from @grey-monroe.bsky.social lab at UC Davis: www.pnas.org/doi/10.1073/... "Genome degradation in plant tissue culture" #PlantScience The data presented have a lot of implications both on basic biology and applications.
pnas.org
Genome degradation in plant tissue culture | PNAS
Many plants, unlike most animals, can reproduce as clones [D. Kester, HortScience 18, 831–837 (1983), 10.21273/hortsci.18.6.831]. Cloning plants is...
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Reposted by Tianrun Jerry Li
Gitta Coaker @gittacoaker.bsky.social · 18/04/2026
We are hiring! We’re excited to recruit a postdoc to our lab at UC Davis to work on plant immune engineering and single-cell analyses of plant pathogen interactions. Apply by June 1. Please repost. www.coakerlab.org/postdoctoral...
Postdoctoral Scholar position in the Coaker group
University of California, Davis
We are seeking a Postdoctoral Scholar to join our research program focused on immune receptor engineering and spatial analyses of plant pathogens interactions using computational and imaging approaches. The position will involve integration of molecular, imaging, and computational approaches. Relevant publications from the laboratory include Nature Plants (2025, PMID: 40721669), Proceedings of the National Academy of Sciences (2024, PMID: 38814867), and Cell Reports (2023, PMID: 37342910). https://www.coakerlab.org/
Qualifications:
•	Ph.D. in plant biology, molecular biology, genetics, computational biology, or a related field
•	Strong background in genomics and/or computational biology 
•	First author publications in peer-reviewed journals
•	Ability to work both independently and collaboratively in a multidisciplinary environment
•	Experience in plant innate immunity is preferred

Application Instructions:
The position is initially available for two years, with the possibility of extension based on performance and funding. Salary is based on the University of California postdoctoral salary scale (https://www.ucop.edu/academic-personnel-programs/_files/2025-26/represented-oct-2025-scales/t23.pdf). The salary range for this position is $69,073-$82,836 US Dollars/year. 
Review of applications will begin June 1, 2026 and will continue until the position is filled.
Please submit a CV, a brief statement of research interests (~1 page), and contact information for three references to glcoaker@ucdavis.edu. The research statement should describe your previous work, how your expertise aligns with ongoing research in the lab, and potential future research directions.
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Reposted by Tianrun Jerry Li
Gitta Coaker @gittacoaker.bsky.social · 24/02/2026
doi.org/10.1073/pnas...
doi.org
Stripe rust fungus subverts wheat phase separation–mediated immunity to promote infection | PNAS
Liquid–liquid phase separation (LLPS) has emerged as an important strategy for plant stress resistance, yet its dynamic regulation during plant–pat...
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Reposted by Tianrun Jerry Li
Tiffany Lowe-Power stands with Minnesota @tlowepower.bsky.social · 23/01/2026
www.pnas.org/doi/10.1073/... Excited to share that PNAS published our research article focused on "Why are Ralstonia goofy?"
pnas.org
The EPS-I exopolysaccharide transforms Ralstonia wilt pathogen biofilms into viscoelastic fluids for rapid dissemination in planta | PNAS
Ralstonia solanacearum species complex (RSSC) pathogens cause destructive plant wilt diseases of a wide variety of crops, leading to significant ag...
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Reposted by Tianrun Jerry Li
Ellen Rim @ellenrim.bsky.social · 20/08/2025
Really excited to join Stanford ChemE this September! We'll engineer proteins in plant immune and hormone pathways, combining high-throughput directed evolution with ML. Our goal is to enhance climate stress resilience and disease resistance in crops: rim.stanford.edu
rim.stanford.edu
Harnessing synthetic biology to engineer resilient crops
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Tianrun Jerry Li @jerrytli.bsky.social · 20/08/2025
I’m honored to share the illustration accompanying our receptor engineering paper in Nature Plants. Created by the talented Phoebe Sinner from the Coaker lab, this artwork elegantly highlights how natural diversity contributes to differences in receptor specificity. www.nature.com/articles/s41...
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Tianrun Jerry Li @jerrytli.bsky.social · 19/08/2025
Happy to share that the last piece of my thesis is finally out! Here, we designed and delivered a dual PRR stack in potato to control vector-borne and soil-borne bacterial pathogens, Ca. Liberibacter solanacearum and Ralstonia solanacearum. onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Introducing Pattern Recognition Receptors in Potato Confers Enhanced Resistance to Ralstonia solanacearum but Not a Vector Borne Pathogen
Click on the article title to read more.
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Tianrun Jerry Li @jerrytli.bsky.social · 29/07/2025
It’s my great honor to be part of this project and happy to see this part of my thesis work finally out in Nature Plants!
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Reposted by Tianrun Jerry Li
Dani Stevens, Ph.D. @danimstevens.bsky.social · 16/07/2025
#2025ISMPMI 📣 In silico screening of PRR-epitope interactions is now possible! Here, we developed mamp-ml to predict their immunogenic outcomes without structural context. Let's accelerate engineering plant receptors for robust resistance! 🚀🌱 Small 🧵 www.biorxiv.org/content/10.1...
biorxiv.org
mamp-ml: A deep learning approach to epitope immunogenicity in plants
Eukaryotes detect biomolecules through surface-localized receptors, key signaling components. A subset of receptors survey for pathogens, induce immunity, and restrict pathogen growth. Comparative gen...
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