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Ellen Rim

@ellenrim.bsky.social
98 followers 98 following 29 posts

Crops x synthetic biology. Assistant Professor @Stanford ChemE. Long-term collaborator of @jimnotwell.bsky.social

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Reposted by Ellen Rim
Gozde Demirer @prof-gozde.bsky.social · 19/06/2026
Targeted DNA insertion remains a major bottleneck in plant engineering. We developed an avian R2 retrotransposon as an efficient plant genome editor to precisely insert large DNA payloads at targeted sites: www.nature.com/articles/s41... Congratulations to @kimuchenje03.bsky.social and the team! 🧵👇
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Reposted by Ellen Rim
International Society for Molecular Plant-Microbe Interactions @ismpmi.bsky.social · 01/06/2026
Announcing our new free Webinar series sponsored by GetGenome: Road to Jeju. Check out our Legends and Rising Stars of IS-MPMI speakers. Sign up to attend the first talk by Roger Innes on June 17. lnkd.in/gw4pKp4K Check back for how to apply to give a Rising Stars of IS-MPMI talk.
Images of our Legends of IS-MPMI Speakers show Roger Innes, Jane Parker, Xinnian Dong and Jonathan Jones
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Ellen Rim @ellenrim.bsky.social · 18/03/2026
This is wild: HMA domain proteins binding a MAX effector to activate NLR-mediated immunity through cNMP signaling molecules. www.biorxiv.org/content/10.6...
biorxiv.org
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Ellen Rim @ellenrim.bsky.social · 27/11/2025
Optimized glycosylation patterns to recapitulate arabidopsis FLS2-flagellin binding in yeast surface display 👏 www.biorxiv.org/content/10.1...
biorxiv.org
Tuning Yeast Glycosylation Proximal to the FLS2-flg22 Binding Interface enables Functional Yeast Surface Display under Induced ER Stress
Pattern recognition receptors such as FLAGELLIN SENSING 2 (FLS2) are central to plant immunity and attractive targets for engineering broader detection of bacterial phytopathogens. However, evaluating...
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Ellen Rim @ellenrim.bsky.social · 10/11/2025
Save the american chestnut 🌰
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Reposted by Ellen Rim
Chris Dundas @cmdundas.bsky.social · 16/10/2025
Plant synthetic biology faculty opening – come be my colleague! 🌱🧬 @universityofga.bsky.social Department of Plant Biology is hiring a tenure-track Assistant Professor in Plant Synthetic Biology for Strategic Resources Research. Join UGA's growing plant synbio community!
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Ellen Rim @ellenrim.bsky.social · 03/10/2025
Reading this 👀 new tool for in vivo plant protein selection www.science.org/doi/10.1126/...
science.org
Engineered geminivirus replicons enable rapid in planta directed evolution
Directed evolution can rapidly generate genetic variants with new and enhanced properties, yet efficient platforms for performing such evolution directly in plant cells have been lacking. We developed...
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Ellen Rim @ellenrim.bsky.social · 20/08/2025
Really excited to join Stanford ChemE this September! We'll engineer proteins in plant immune and hormone pathways, combining high-throughput directed evolution with ML. Our goal is to enhance climate stress resilience and disease resistance in crops: rim.stanford.edu
rim.stanford.edu
Harnessing synthetic biology to engineer resilient crops
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Ellen Rim @ellenrim.bsky.social · 08/07/2025
Found last season's EquiSciTrack series helpful for the job search!
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Ellen Rim @ellenrim.bsky.social · 26/04/2025
Studying wild resistant varieties -> basic biology -> a solution to a devastating disease in citrus. Pretty amazing
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Reposted by Ellen Rim
UCDavisPlants @ucdavisplants.bsky.social · 18/04/2025
🌱From Nature Genetics: RWT4, a wheat tandem kinase protein, directly binds and phosphorylates a fungal effector to trigger defense - highlighting TKPs as effector sensors. (Yi-Chang Sung, Suji Baik, Gitta Coaker) ▶️ www.nature.com/articles/s41...
nature.com
Wheat tandem kinase RWT4 directly binds a fungal effector to activate defense - Nature Genetics
This study shows that RWT4, a wheat tandem kinase, confers resistance to the fungal pathogen Magnaporthe oryzae by directly binding to the pathogen effector AvrPWT4 and activating host defense.
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Ellen Rim @ellenrim.bsky.social · 18/04/2025
Toddler and i enjoy the same book somehow
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Ellen Rim @ellenrim.bsky.social · 06/04/2025
I've also been thinking about this: "Why Are There So Few Commercially Successful Crop Varieties Engineered for Disease Resistance?" bsppjournals.onlinelibrary.wiley.com/doi/10.1111/...
bsppjournals.onlinelibrary.wiley.com
It‘s Complicated: Why Are There So Few Commercially Successful Crop Varieties Engineered for Disease Resistance?
It is more than 40 years since the era of transgenic plants began and more than 30 years after the cloning of the first plant disease resistance genes. Despite extensive progress in our mechanistic u....
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Reposted by Ellen Rim
Claudio Cantù @claudiocantu81.bsky.social · 20/03/2025
If you are a #WNT lover (who is not?) you cannot miss the incoming Grodon Research Conference www.grc.org/wnt-signalin... and the preceeding GRSeminar www.grc.org/wnt-signalin... a unique forum for younger scientists to present their work 👉 Please help me spread the word and RT (or RB?)!🙏
grc.org
2025 Wnt Signaling Conference GRC
The 2025 Gordon Research Conference on Wnt Signaling will be held in Lewiston, Maine. Apply today to reserve your spot.
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Ellen Rim @ellenrim.bsky.social · 21/02/2025
Former USDA employee (and a UC Davis colleague) terminated days before her due date: "We wouldn't have food without our farmers. A lot of us working for the USDA, that's what we do, we support American farmers" abcnews.go.com/Politics/vid...
abcnews.go.com
Video Former USDA employee terminated days before her due date
Justine Beaulieu was impacted by the Trump layoffs days before she was due to give birth, losing her maternity leave and her health insurance in limbo.
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Reposted by Ellen Rim
Innovative Genomics Institute @innovativegenomics.bsky.social · 19/02/2025
We're celebrating our 10th anniversary this year and remembering some great moments from the past decade! In February 2022, IGI's Pam Ronald won the Wolf Prize in Agriculture for her “pioneering work on disease resistance and environmental stress tolerance in rice.” Read more: ow.ly/kAqe50UPW9s
Pam Ronald smiling
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Ellen Rim @ellenrim.bsky.social · 06/02/2025
A tour de force starting with C. elegans juice that identified a nematode peptide MAMP-plant immune receptor pair
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Reposted by Ellen Rim
Alexander Howard @alexanderhoward.bsky.social · 29/01/2025
I'm very excited to share my first graduate research project! Check out our preprint which describes how data generated with directed evolution can be used to model the phenotypic effects of naturally-evolved sequence variants. (1/11) www.biorxiv.org/content/10.1...
biorxiv.org
Combining Directed Evolution with Machine Learning Enables Accurate Genotype-to-Phenotype Predictions
Linking sequence variation to phenotypic effects is critical for efficient exploitation of large genomic datasets. Here we present a novel approach combining directed evolution with protein language m...
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Ellen Rim @ellenrim.bsky.social · 14/01/2025
This is wild. A fungal pathogen-secreted molecule can transdifferentiate bundle sheath into xylem, increasing water content of plant host under drought stress. www.biorxiv.org/content/10.1...
biorxiv.org
A single pathogen-secreted protein reprograms plants for drought resilience
Climate change-enforced drought stress conditions and diseases caused by pathogens often co-occur and represent one of the greatest challenges in plant science. Wilt pathogens that colonize water-cond...
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Ellen Rim @ellenrim.bsky.social · 23/12/2024
Review of CRISPR-edited crops - personal favorite is non-browning avocados!
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Reposted by Ellen Rim
Pam Ronald @pcronald.bsky.social · 27/11/2024
In her second paper Flor and team (collaboration with Lingdong Shi and Jill Banfield) showed that reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling. www.biorxiv.org/content/10.1...
biorxiv.org
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Pam Ronald @pcronald.bsky.social · 27/11/2024
Flor and team also have two new papers! www.biorxiv.org/content/10.1...
biorxiv.org
Tyrosine-sulfated peptide hormone induces flavonol biosynthesis to control elongation and differentiation in Arabidopsis primary root
In Arabidopsis roots, growth initiation and cessation are organized into distinct zones. How regulatory mechanisms are integrated to coordinate these processes and maintain proper growth progression o...
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Reposted by Ellen Rim
Pam Ronald @pcronald.bsky.social · 27/11/2024
Kudos to Ellen Rim and team on their fantastic new paper describing a HTP approach for generating new immune specificities. www.biorxiv.org/content/10.1...
biorxiv.org
Directed evolution of a plant immune receptor for broad spectrum recognition of pathogen effectors
Rapid development of immune receptors that protect crops from emerging pathogens is a paramount goal. We applied high throughput directed evolution to the ligand binding domain of the rice immune rece...
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