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Jan Gogarten

@jangogarten.bsky.social
1.3K followers 1.1K following 159 posts

Evolutionary community ecologist interested in disease emergence. Work with environmental DNA, primates, bacteriophages. Like bicycles. Heading a junior research group at the Helmholtz Institute for One Health.

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Reposted by Jan Gogarten
World Organisation for Animal Health (WOAH) Africa @woah-africa.bsky.social · 8h
What do we know about emerging zoonotic diseases, and what remains to be discovered? At the @woahglobal.bsky.social One Health ZOOSURSY Symposium in Nairobi, Kenya, experts are exploring threats including Ebola, Mpox, influenzas, anthrax and Lassa fever to strengthen disease surveillance in Africa.
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Jan Gogarten @jangogarten.bsky.social · 26/07/2026
Especially when they are given the time and resources to do the topic justice. Great read and makes me again think about infectious disease dynamics and disease emergence with these ecological lenses. Thanks for sharing!
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Jan Gogarten @jangogarten.bsky.social · 26/07/2026
This sort of thread is what makes Bluesky so nice :) also it highlights how nice it is to read about a topic by an expert who has spent their life working on a topic - I hear people say AI will replace review articles, but this thread shows all the nuance and depth that an expert brings.
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Jan Gogarten @jangogarten.bsky.social · 23/07/2026
What a great place to land and what a cool group to join - sounds like exciting things afoot and that there are options for positions :) check it out!
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Jan Gogarten @jangogarten.bsky.social · 18/07/2026
„and the opportunities for flawed or fabricated information to be seen as reality will grow—all while AI profiteers cash in.“
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Jan Gogarten @jangogarten.bsky.social · 18/07/2026
„If the scientific community fails to address the influence of AI, then authentic research and validated findings will slow down to an expensive trickle into established knowledge…“ www.science.org/doi/10.1126/...
science.org
AI in scientific publishing: Slower, worse, and more expensive
There’s a saying in the management world, popularized by NASA administrator Daniel Goldin in the 1990s, that the goal of technological improvements is to make products faster, better, and cheaper. Alt...
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Reposted by Jan Gogarten
Dieter Lukas @dieterlukas.fediscience.org.ap.brid.gy · 06/07/2026
I compiled a list of 350 #funding opportunities for #postdoctoral research #fellowships: docs.google.com/spreadsheets/d/1J2M… I realized I should share this again after mentioning it to some folks at the #EFP2026
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Jan Gogarten @jangogarten.bsky.social · 13/07/2026
Dedication… :)
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
And of course a massive thanks to the @dfg.de @helmholtz-hioh.bsky.social @helmholtzhzi.bsky.social #ARCUS_Foundation @unigreifswald.bsky.social for your dedication to promoting scientists from Sub-Saharan Africa!
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
And thanks to the @schauflerlab.org and + #IRET/CENAREST for collaborating on this! Here is hoping to many more interesting studies to come!
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
And thanks to the Ministère de l’Enseignement Supérieur et de la Recherche Scientifique, the Ministère de Eaux et Fôrets in Ivory Coast, the Office Ivoirien des Parcs et Réserves and the Centre Suisse de Recherches Scientifiques en Côte d’Ivoire for permitting and supporting this study.
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
A big thanks to @taichimpproject.bsky.social for your commitment to #longtermresearch, which makes these unique studies possible! The struggle to keep such projects going is real + amazing to see your efforts thrive, that the chimps continue to find a way to survive + that the research continues.
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
A huge congratulations and thanks to first author Tanguy Tanga - it has been a pleasure working with you during your PhD and this paper is a testament to your detection and skills. Excited to see what comes next for you!
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
We screened 410 samples for >2,000 resistance genes, and documented an increase in the abundance and diversity of resistance genes. Findings suggest global rise of antimicrobial resistance is reaching even remote wildlife populations, highlighting how interconnected our world is.
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Jan Gogarten @jangogarten.bsky.social · 10/07/2026
New study 🚨🚨🚨 Using fecal samples collected over 17 years, we tracked antibiotic resistance genes in wild chimpanzees in Taï National Park; one of the last remaining chunks of primary rainforests in West Africa. Study out now in @isme-microbes.bsky.social: doi.org/10.1093/isme...
A map labeled A showing the home ranges of the three neighboring chimpanzee groups, along with data on the time since the groups have been habituated to human observers labelled B, and graphs showing the accumulation of antimicrobial resistance genes and antimicrobial resistance classes in those chimpanzee groups labeled C and D.
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Jan Gogarten @jangogarten.bsky.social · 01/07/2026
Excited to be part of the Global Young Academy + join an interesting and daunting discussion about the challenges facing scientific enterprise. Many challenges, but inspiring group of scientists in @globalyacademy.bsky.social dreaming up solutions. Thanks Robbert Dijkgraaf for starting discussion!
Robbert Dijkgraaf standing at the podium in a large conference hall in front of a slide showing 6 pieces of a advice for young scientists.
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Jan Gogarten @jangogarten.bsky.social · 27/06/2026
Reaching out to the editors and authors - and will delete this post in a minute. Don't want to cause stress for a PhD student but hope things get fixed soon!
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Jan Gogarten @jangogarten.bsky.social · 13/06/2026
Wohoo! Great news and congratulations!
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Jan Gogarten @jangogarten.bsky.social · 30/05/2026
The trophic links side of things is indeed very exciting too!
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Jan Gogarten @jangogarten.bsky.social · 28/05/2026
Nice discussion with @alicesunreports.bsky.social in @knowablemag.bsky.social on the potential of #eDNA, particularly invertebrate-derived DNA, to contribute to biomonitoring and studying disease ecology: knowablemagazine.org/content/arti...
knowablemagazine.org
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Reposted by Jan Gogarten
Kristian G. Andersen @kgandersen.bsky.social · 18/05/2026
Amazing speed from the teams in Uganda and the DRC - impressive! Three genomes released so far - a few quick takes: 1️⃣ New genomes ~equidistant from 2007 and 2012 outbreaks. 2️⃣ Represents new spillover from reservoir. 3️⃣ Limited diversity, so too early to speculate on timing. Great work ⭐!
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Reposted by Jan Gogarten
Nick Loman @pathogenomenick.bsky.social · 16/05/2026
Rapid release of multiplex PCR amplicon scheme for Andes hantavirus whole genome sequencing validated on control material: www.biorxiv.org/content/10.6... @scalene.bsky.social @stevepullan.bsky.social @ukhsa.bsky.social output from HPRU in Public Health Genomics
biorxiv.org
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Jan Gogarten @jangogarten.bsky.social · 07/05/2026
A peer review credit system to incentivize reviewing and editing - seems like it could be worth a try?Paying reviewers actual money though, rather than a new credit seems reasoable too, especially given the profit margins of scientific publishers ;) www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Jan Gogarten
Helmholtz-Zentrum für Infektionsforschung (HZI) @helmholtzhzi.bsky.social · 06/05/2026
Bei #CiFly werden Schüler:innen zu Forschenden: Im Citizen Science-Projekt des @helmholtz-hioh.bsky.social sammeln sie mit @greifswaldmoor.bsky.social Daten zu antimikrobiellen Resistenzen in Moorlandschaften - einem Schlüsselökosystem für Klima und Gesundheit: www.helmholtz-hzi.de/media-center...
helmholtz-hzi.de
Greifswalder Schüler:innen starten mit Citizen Science-Projekt CiFly
Schüler:innen untersuchen im Rahmen des Projekts CiFly anliegende Moore in Greifswald und lernen damit Feldforschung kennen.
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Reposted by Jan Gogarten
Simon Hammann @simonhammann.bsky.social · 20/04/2026
Don't be shy to take on a little two-week side project. These five months will be the most precious three years of your academic journey.
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Reposted by Jan Gogarten
Helmholtz Institute for One Health (HIOH) @helmholtz-hioh.bsky.social · 20/04/2026
🌍 Guest Lecture at HIOH Prof. Lee White – conservationist, biologist & former Environment Minister of Gabon – speaks on: 🎤 “From science to global policy – Saving the Congo Basin’s rainforests” From field research to COP26, bridging science & policy - Join us for an inspiring talk! #OneHealth
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Reposted by Jan Gogarten
BK. Titanji @boghuma.bsky.social · 29/03/2026
A new study in Nature Microbiology reveals that an eye condition called POH-VAU (persistent ocular hypertensive viral anterior uveitis) is caused by covert mortality nodavirus (CMNV) - a virus that's been devastating shrimp farms for over a decade. www.nature.com/articles/s41...
nature.com
An emerging human eye disease is associated with aquatic virus zoonotic infection - Nature Microbiology
Covert mortality nodavirus, a pathogen previously known to cause important losses in shrimp aquaculture, is identified as being a potential causative agent of an emerging and severe ocular disease in ...
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Jan Gogarten @jangogarten.bsky.social · 28/03/2026
Findings suggest duikers should be carefully examined as sources of MPXV and other orthopoxviruses in humans. Preprint: doi.org/10.21203/rs.... With @helmholtz-hioh.bsky.social @helmholtzhzi.bsky.social @scs22.bsky.social @wwf.de #FLI #WWF-DRC @taichimpproject.bsky.social @lpzoo.org + many more.
doi.org
Duikers are infected with orthopoxviruses
An increasing number of mpox cases caused by the monkeypox virus (MPXV; Orthopoxvirus monkeypox), are reported in West and Central Africa, driven by frequent zoonotic spillovers into human populations...
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Jan Gogarten @jangogarten.bsky.social · 28/03/2026
To assess if duikers serve as intermediate hosts for MPXV, we revisited a diet analysis from an MPXV outbreak in chimps, which supports epidemiological link to duiker consumption (doi.org/10.1038/s415...), suggesting duikers can serve as intermediate hosts for chimps and thus likely also humans.
doi.org
Monkeypox virus emergence in wild chimpanzees reveals distinct clinical outcomes and viral diversity - Nature Microbiology
Monkeypox is caused by an emerging zoonotic virus. This study describes a detailed investigation into monkeypox outbreaks in chimpanzees through non-invasive environmental sampling, virus genomics, pa...
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Jan Gogarten @jangogarten.bsky.social · 28/03/2026
We found >21% of pellets contained non-duiker mammal DNA, including species infected with MPXV in this ecosystem. Coupled with camera trap footage, results point towards frequent scavenging by duikers, which may expose them to orthopoxviruses (and other pathogens?).
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Jan Gogarten @jangogarten.bsky.social · 28/03/2026
We detected orthopoxviruses in 2 duiker carcasses from bushmeat markets in the DRC as well as in a duiker carcass found in Taï National Park, Côte d’Ivoire. To investigate how duikers, which are classically described as herbivores, might be exposed, we performed a diet analysis metabarcoding feces.
doi.org
Duikers are infected with orthopoxviruses
An increasing number of mpox cases caused by the monkeypox virus (MPXV; Orthopoxvirus monkeypox), are reported in West and Central Africa, driven by frequent zoonotic spillovers into human populations...
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Jan Gogarten @jangogarten.bsky.social · 28/03/2026
Nice coverage by @kakape.bsky.social in @science.org of our preprint, where we present data showing orthopoxviruses, including MPXV, infect duikers, which are popular bushmeat in many mpox endemic regions. Highlights lots more about orthopoxvirus ecology to explore: www.science.org/content/arti...
science.org
These small African antelopes may help mpox spread
Researchers find evidence that duikers, hunted and eaten across sub-Saharan Africa, can harbor the deadly virus
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Jan Gogarten @jangogarten.bsky.social · 27/03/2026
And of course - we pay lots of taxes to keep systems like this in place so trade offs and all that.
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Jan Gogarten @jangogarten.bsky.social · 27/03/2026
It’s not perfect and there are caps to the salary you get and lots to improve, including for young academic parents - but my heart aches for many parents in the US who have to make brutal decisions.
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Jan Gogarten @jangogarten.bsky.social · 27/03/2026
America is crazy… Germany requires employers/state give mothers 6 week prenatal leave, 8 weeks postnatal, plus the state offers 12-14 months that parents can split between them paid. And both parents can then take up to 3 years unpaid leave / child and job needs to be held for them during that time.
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Jan Gogarten @jangogarten.bsky.social · 19/03/2026
For the #eDNA crowd: we are putting together a special issue about terrestrial vertebrate biomonitoring: onlinelibrary.wiley.com/page/journal.... If you have questions or ideas - happy to discuss!
onlinelibrary.wiley.com
Environmental DNA Call for Papers The Burgeoning Potential for Terrestrial Vertebrate Monitoring with eDNA
Environmental DNA is an open access eDNA journal that provides an international forum for basic & applied research on all areas of eDNA analysis.
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Reposted by Jan Gogarten
Darren Dahly @statsepi.bsky.social · 18/03/2026
Every day is a good day for sharing one of the most useful papers about research data ever written. PLEASE get your people to understand and follow this advice. www.tandfonline.com/doi/full/10....
Data Organization in Spreadsheets
Karl W. Broman
& Kara H. Woo
Pages 2-10 | Received 01 Jun 2017, Accepted author version posted online: 29 Sep 2017, Published online: 24 Apr 2018

    1. Introduction
    2. Be Consistent
    3. Choose Good Names for Things
    4. Write Dates as YYYY-MM-DD
    5. No Empty Cells
    6. Put Just One Thing in a Cell
    7. Make it a Rectangle
    8. Create a Data Dictionary
    9. No Calculations in the Raw Data Files
    10. Do Not Use Font Color or Highlighting as Data
    11. Make Backups
    12. Use Data Validation to Avoid Errors
    13. Save the Data in Plain Text Files

ABSTRACT

Spreadsheets are widely used software tools for data entry, storage, analysis, and visualization. Focusing on the data entry and storage aspects, this article offers practical recommendations for organizing spreadsheet data to reduce errors and ease later analyses. The basic principles are: be consistent, write dates like YYYY-MM-DD, do not leave any cells empty, put just one thing in a cell, organize the data as a single rectangle (with subjects as rows and variables as columns, and with a single header row), create a data dictionary, do not include calculations in the raw data files, do not use font color or highlighting as data, choose good names for things, make backups, use data validation to avoid data entry errors, and save the data in plain text files.
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Helmholtz Institute for One Health (HIOH) @helmholtz-hioh.bsky.social · 06/03/2026
🎉 Congratulations to Ariane Düx on successfully defending her dissertation! 🎓 A wonderful conclusion to years of intensive research—Thank you for your inspiring work and valuable contribution to research 🌟 All the best and continued success! #PhD #OneHealth #Research #Science #AcademicLife
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Helmholtz Institute for One Health (HIOH) @helmholtz-hioh.bsky.social · 13/03/2026
🚨 Hiwi-Job in der Wissenschaftskommunikation! Du studierst und hast Lust auf Social Media, Website, Gestaltung & Events? Dann unterstütze uns als studentische/wissenschaftliche Hilfskraft (w/m/d). 👉 www.uni-greifswald.de/universitaet... #HiwiJob #Greifswald #SciComm #OneHealth
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Eduardo Amorim @cegamorim.bsky.social · 13/03/2026
Dogs evolved to eat your leftovers! Comparing dog & wolf genomes revealed dogs have up to 30 EXTRA copies of the amylase gene (AMY2B) that helps digest starch. This is a key genomic signature of living alongside humans & table scraps for thousands of years 🐕 www.nature.com/articles/nat... #2026MMM
Adapted from Axelsson et al. 2013 Fig 2c: Histogram showing the distribution of diploid amylase copy number in wolf (n=35, blue) and dog (n=136, red). Dogs carry more copies of the starch-digesting gene AMY2B than wolves. Additional copies make dogs better than wolves at digesting starchy foods like grains & vegetables.
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John Dennehy @drjdennehy.bsky.social · 12/03/2026
Capturing dynamic phage–pathogen coevolution by clinical surveillance "we capture the acquisition of a parasitic anti-phage mobile genetic element, PLE11, that initiated a selective sweep coinciding with the largest cholera outbreak in recent records. " www.nature.com/articles/s41...
nature.com
Capturing dynamic phage–pathogen coevolution by clinical surveillance - Nature
The acquisition of a parasitic anti-phage mobile genetic element, PLE11, showing potent anti-phage activity against cocirculating ICP1, and the subsequent evolution of ICP1 to escape this defense, are...
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Jan Gogarten @jangogarten.bsky.social · 02/03/2026
Friendly reminder that simply changing the search engine you use can contribute to forest #restoration efforts! A cool video highlighting our efforts in Uganda's Kibale National Park: youtu.be/gNQjGYqaN0w @ecosiasearch.bsky.social @helmholtzhzi.bsky.social @helmholtz-hioh.bsky.social
youtu.be
How a “Problem” Plant Is Saving a Forest
YouTube video by Ecosia
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bioRxiv Genetics @biorxiv-genetic.bsky.social · 24/02/2026
3,500 years of sheeppox virus evolution inferred from archaeological and codicological genomes www.biorxiv.org/content/10.64898/20…
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Helmholtz Institute for One Health (HIOH) @helmholtz-hioh.bsky.social · 11/02/2026
🚨 New research traces Mpox (MPXV)🧬 Fire-footed rope squirrels are a likely reservoir. In Taï NP,mangabeys caught MPXV by eating them—showing a direct spillover pathway & zoonotic risk. www.nature.com/articles/s41... #Mpox @taichimpproject.bsky.social @jangogarten.bsky.social @scs22.bsky.social
doi.org
Fire-footed rope squirrels (Funisciurus pyrropus) are a reservoir host of monkeypox virus (Orthopoxvirus monkeypox)
Mpox, caused by the monkeypox virus (MPXV; Orthopoxvirus monkeypox), is on the rise in West and Central Africa. Most outbreaks are short-lived, but MPXV has recently caused larger epidemics driven by ...
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Reposted by Jan Gogarten
Healthcare-Global @healthcare-global.bsky.social · 05/02/2026
www.nature.com/articles/s41...
nature.com
Genome contamination may lead to an overestimation of horizontal gene transfer inferences - Nature Communications
Nature Communications - Genome contamination may lead to an overestimation of horizontal gene transfer inferences
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Jan Gogarten @jangogarten.bsky.social · 04/02/2026
Approximate timeframe: ~9–12 months (flexible start, from mid-2026). Ideal candidate would have a strong interest in molecular methods, biodiversity conservation, and/or global health. Travel, lab work and nice team! Happy to answer questions. Please spread the word! @helmholtz-hioh.bsky.social
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Jan Gogarten @jangogarten.bsky.social · 04/02/2026
We are offering a Masters project with Benno Kreuels at the BNITM, with aim of developing #eDNA tools to monitor #snakes and help determine snake species involved with bites. Involves work with patient samples and combines lab experiments, bioinfo analyses, and testing international sample sets.
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Emanuel Wyler @ewyler.bsky.social · 24/01/2026
Fantastic :-) Fits well with the great project of heimspiel-wissenschaft.de
heimspiel-wissenschaft.de
Heimspiel Wissenschaft - Heimspiel Wissenschaft
Heimspiel Wissenschaft bringt Wissenschaftler:innen, die aus ländlichen Regionen stammen, zurück in ihre Heimatorte.
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Jan Gogarten @jangogarten.bsky.social · 24/01/2026
Ich wusste nicht, wie sehr ich das gebraucht hatte. Danke, Weitenhagen und was für eine liebe Gruppe von Community Builders. Und wenn ihr mal eingeladen werdet - kann ich euch nur mut geben das angebot anzunehmen!
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