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Jake Choby

@jakechoby.bsky.social
406 followers 149 following 10 posts

Assistant Professor, University of North Carolina Antibiotic heteroresistance in Enterobacterales chobylab.org

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Jake Choby @jakechoby.bsky.social · 11/09/2026
Together, these studies show that HR can arise without gene amplification. Transcriptional states shaped by the environment or regulatory networks can determine which cells survive. Grateful to our collaborators: @tozturk90.bsky.social, @ernstlab.bsky.social, and @victorband.bsky.social +others! 4/4
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Jake Choby @jakechoby.bsky.social · 11/09/2026
2. In another Enterobacter isolate, ~1% of cells had preexisting σE activity—and only those cells survived colistin. σE generated bimodality, while PhoPQ generated resistance: two distinct regulatory systems acting together to produce heterogeneity in resistance. www.science.org/doi/10.1126/... 3/4
science.org
Combinatorial action of regulatory systems generates colistin heteroresistance
The mechanism by which phenotypic heterogeneity is generated within a bacterial population and leads to colistin heteroresistance has been unclear. Heteroresistance is a form of antibiotic resistance ...
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Jake Choby @jakechoby.bsky.social · 11/09/2026
1. In an Enterobacter isolate, variation in GlpT expression generated the fosfomycin-resistant subpopulation, with FosA enhancing resistance. Glucose increased HR, including in diabetic models, showing the host environment can shape resistance. @natcomms.nature.com www.nature.com/articles/s41... 2/4
nature.com
Heterogeneity in the response to the metabolic environment drives fosfomycin heteroresistance - Nature Communications
Choby et al. show an antibiotic-resistant subpopulation is generated by heterogeneity in expression of an antibiotic importer repressed by environmental glucose, suggesting diabetes-related infection ...
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Jake Choby @jakechoby.bsky.social · 11/09/2026
I’m excited to share the final two papers from my postdoc with @dweisslab.bsky.social. Together, they reveal two mechanisms of antibiotic heteroresistance (HR) that do not rely on gene copy-number changes, but instead arise from cell-to-cell differences in transcription. A short thread: 1/4
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Reposted by Jake Choby
Nature Communications @natcomms.nature.com · 28/08/2026
#Bacteria Ornithine utilization is important for Acinetobacter baumannii during gut colonization. A protein that regulates ornithine catabolism helps the pathogen to sense and respond to competition for amino acids with the resident microbiota @xiaomeiren.bsky.social @laurenpalmer.bsky.social
dlvr.it
A regulator of amino acid catabolism controls Acinetobacter baumannii gut colonization - Nature Communications
Asymptomatic gut colonization is a reservoir for antimicrobial resistance (AMR) such as by the bacterium Acinetobacter baumannii. Geary and Ren, et al., report that A. baumannii evolved a regulator that helps sense competition from the gut microbiota.
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Reposted by Jake Choby
Erin Green @erinrgreen.bsky.social · 29/04/2026
Excited to share the final part of my postdoc work, where we investigate the impact of antimicrobial treatment on susceptibility to hospital-acquired Acinetobacter baumannii pneumonia. Thanks to our amazing group of collaborators for their contributions to this study! www.pnas.org/doi/10.1073/...
pnas.org
The intestinal microbiota impacts nutritional immunity and resistance to Acinetobacter baumannii pneumonia | PNAS
Broad-spectrum antibiotics are frequently administered to intensive care unit patients as part of empiric care. This treatment has been associated ...
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Reposted by Jake Choby
David Weiss @dweisslab.bsky.social · 12/03/2026
Bacteria in our BRAINS??! We observed translocation of bacteria from the gut to the brain via the vagus nerve. This occurred after high fat diet, or without dietary changes in mouse models of Alzheimer’s, Parkinson’s, and autism. journals.plos.org/plosbiology/...
journals.plos.org
Translocation of bacteria from the gut to the brain in mice
Recent studies link gut dysbiosis to neurological disease, but the underlying mechanisms remain unclear. This study shows that a high-fat diet increases gut permeability and enables bacterial transloc...
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Reposted by Jake Choby
AMR-kleb/staph @s-rowe-conlon.bsky.social · 01/12/2025
Thrilled to share our latest paper on antibiotic treatment failure of Klebsiella pneumoniae liver abscesses www.pnas.org/doi/full/10.... @drwalkermsbanta.bsky.social
pnas.org
Antibiotics accumulate in Klebsiella pneumoniae liver abscesses but fail to eliminate antibiotic-tolerant populations | PNAS
Liver abscesses caused by hypervirulent Klebsiella pneumoniae (hvKp) can lead to severe metastatic complications, with mortality rates ranging from...
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Reposted by Jake Choby
Conlon Lab @bconlon.bsky.social · 10/10/2025
Delighted to share our latest paper - A host-directed adjuvant sensitizes intracellular bacterial persisters to antibiotics. Excellently led by Dr. Kuan-Yi Lu. We think it's a great proof-of-concept that altering immune cell behavior can make antibiotics work better www.nature.com/articles/s41...
nature.com
A host-directed adjuvant sensitizes intracellular bacterial persisters to antibiotics - Nature Microbiology
The authors developed a screen to find compounds that modulate intracellular Staphylococcus aureus metabolism and discovered KL1, which sensitizes persisters to antibiotics by reversing host-induced tolerance.
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Lauren Palmer @laurenpalmer.bsky.social · 04/08/2025
Super excited to share our paper online 🚨today🚨 in Cell Host & Microbe‬! Xiaomei Ren @xiaomeiren.bsky.social and Mason Clark @rmasonclark.bsky.social‬ co-led discovery of ecological factors for Acinetobacter baumannii carriage in the gut, a reservoir for pathogen spread. 🎉 tinyurl.com/443kfefk
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Jake Choby @jakechoby.bsky.social · 02/07/2025
Thanks to my colleagues, friends, and especially mentors @dweisslab.bsky.social and Eric Skaar for guidance along the way
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Jake Choby @jakechoby.bsky.social · 02/07/2025
It's a good time to mention that I’ve just started as an assistant professor at the University of North Carolina SOM, Micro & Immuno, where we will work to understand mechanisms that generate heteroresistance and phenotypic heterogeneity in Enterobacter and other multi-drug resistant Gram- pathogens
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Jake Choby @jakechoby.bsky.social · 02/07/2025
Excited to share the work with @dweisslab.bsky.social‬ and great collaborators on how gene amplification generates dynamic heteroresistance to new beta-lactams, like cefiderocol. We hope drug developers will consider heteroresistance during antibiotic development rdcu.be/euijW
rdcu.be
Copy number flexibility facilitates heteroresistance to increasing antibiotic pressure and threatens the beta-lactam pipeline
Nature Communications - Choby et al. show that dynamic increases in the copy number of preexisting β-lactamase genes in heteroresistance enables resistance of continua of cellular...
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Reposted by Jake Choby
Valeria Reyes Ruiz @reyesruiz.bsky.social · 06/04/2025
So much joy to see everyone today coming together to celebrate 20 years of the Skaar Lab. Thank you to Eric for the leadership and mentorship over the years! 🥰
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Jake Choby @jakechoby.bsky.social · 21/03/2025
Congrats! Such a cool story
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Reposted by Jake Choby
François Mayer @francoismayer.bsky.social · 06/01/2025
News & Views 📄 - Zinc-dependent β-lactam resistance at a cost By Jacob Choby & David Weiss www.nature.com/articles/s41...
nature.com
Zinc-dependent β-lactam resistance at a cost - Nature Microbiology
Chemical genomics reveals the fitness cost of bacterial metallo-β-lactamase in zinc-deplete environments, with implications for treatment options.
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Jake Choby @jakechoby.bsky.social · 06/01/2025
pleased to share our (with @dweisslab.bsky.social) News & Views perspective on this exciting paper nam11.safelinks.protection.outlook.com?url=https%3A...
nam11.safelinks.protection.outlook.com
Zinc-dependent β-lactam resistance at a cost
Nature Microbiology - Chemical genomics reveals the fitness cost of bacterial metallo-β-lactamase in zinc-deplete environments, with implications for treatment options.
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Jake Choby @jakechoby.bsky.social · 13/12/2024
Discussed this awesome paper as a student years ago and still think about it www.cell.com/fulltext/S00...
cell.com
Enteropathogenic E. coli (EPEC) Transfers Its Receptor for Intimate Adherence into Mammalian Cells
Enteropathogenic E. coli (EPEC) belongs to a group of bacterial pathogens that induce epithelial cell actin rearrangements resulting in pedestal formation beneath adherent bacteria. This requires the secretion of specific virulence proteins needed for signal transduction and intimate adherence. EPEC interaction induces tyrosine phosphorylation of a protein in the host membrane, Hp90, which is the receptor for the EPEC outer membrane protein, intimin. Hp90–intimin interaction is essential for intimate attachment and pedestal formation.
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