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Ian Marshall

@ianpgm.bsky.social
574 followers 785 following 186 posts

Associate Professor at Department of Biology, Aarhus University, Denmark 🇩🇰 working on microbial genomics, bioinformatics, cable bacteria, and other sediment microorganisms. www.au.dk/en/ianpgm@bio.au.dk 🇦🇺

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Ian Marshall @ianpgm.bsky.social · 29/09/2026
SONS, DOTUR, MOTHUR and now STROLLUR - this is a beautiful multi-decade commitment
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Pat Schloss @patschloss.bsky.social · 29/09/2026
It breaks my cold little heart that the IMMSA logo includes a stacked bar chart AND that they clearly didn't use subsampling or rarefaction to control for uneven sampling effort.
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Ian Marshall @ianpgm.bsky.social · 17/09/2026
I appreciate funding agencies and universities who have a high-resolution version of their logo on a white background on their homepage for easy screenshotting and pasting into slides and posters.
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Ian Marshall @ianpgm.bsky.social · 17/09/2026
Happy International Microorganism Day from Aarhus University!
People drawing with chalk on a carpark - pictures of microorganisms and related things with colourful text "17th September International Microorganism Day"People drawing with chalk on a carpark - pictures of microorganisms and related things with colourful text "17th September International Microorganism Day"People drawing with chalk on a carpark - pictures of microorganisms and related things with colourful text "17th September International Microorganism Day"People drawing with chalk on a carpark - pictures of microorganisms and related things with colourful text "17th September International Microorganism Day"
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Mike Jetten @msmjetten.bsky.social · 17/09/2026
Happy International Microbe Day! 🔬 On this day in 1683, Antoni van Leeuwenhoek sent his legendary letter describing "animalcules" to the Royal Society in London. Celebrating with a few of our favorite microbes and microbiologists! #anammox #methylomirabilis #methanoperedens @femsmicro.org
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Ian Marshall @ianpgm.bsky.social · 17/09/2026
There's a great new spotlight article in @cp-trendsbiochem.bsky.social by @nmjgeerlings.bsky.social about cable bacteria and electrodes: www.cell.com/trends/bioch...
cell.com
Cable bacteria use extracellular electron transfer
Recent work by Aiyer and colleagues demonstrates that cable bacteria can conserve energy and grow under anoxic conditions by transferring electrons to electrodes via extracellular electron transfer. T...
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John Spear @spearmicrobe.bsky.social · 04/09/2026
Microbial Diversity 2026 @mblscience.bsky.social was outstanding this year! If you’d like to join us next year, apply in late January, early February and spread the word. www.youtube.com/watch?v=7VUY...
youtube.com
Focus on: Microbial Diversity at Marine Biological Laboratory
YouTube video by Marine Biological Laboratory
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Sven T. Stripp @stripplab.bsky.social · 02/09/2026
Give this brief story a read & reach out to Chris @greening.bsky.social if you can help. RP appreciated ❤️
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Amelia Rotaru @ameliarotaru.bsky.social · 01/09/2026
🚨 JOB ALERT🚨 Please repost! An exciting PhD position is now open in Niculina Musat’s team at Aarhus University! The successful candidate will become part of the PROMETHEUS initiative, developing advanced tools to visualize, & better understand, microbe–electrode interfaces. 🔬⚡🦠
phd.nat.au.dk
Developing advanced imaging tools to understand microbe–electrode interfaces
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Ian Marshall @ianpgm.bsky.social · 01/09/2026
Two PhD positions with me at Aarhus University in Denmark are now open for applicants: phd.nat.au.dk/for-applican... Deadline November 1. Thanks @carlsbergfondet.dk!
phd.nat.au.dk
Anaerobic growth of aerobic methane-oxidising bacteria
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SILVA @arb-silva.bsky.social · 26/08/2026
📢 We are excited to announce that the new SILVA 144 Release is now live! See more details here: www.arb-silva.de/news/item/si...
arb-silva.de
SILVA Release 144 is here
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Paul Rainey @paulbrainey.bsky.social · 21/08/2026
A third-year student draws poster PS3.20.305 -- far corner, farthest wall -- and commits to standing there two hours. Barely anyone makes it that far. Two floors up, a senior colleague is having the week of his life. Same conference. A new essay. academicrenewal.substack.com/p/why-we-sti...
academicrenewal.substack.com
Why we still fly
The scientific conference was invented to solve a transport problem we no longer have. What is it for now?
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Ian Marshall @ianpgm.bsky.social · 18/08/2026
Just saw an AI transcript of a meeting I had with someone in Danish - wow, either I'm much worse at pronouncing Danish than I thought or AI is not good at understanding speakers of Danish as a second language. It's complete gobbledygook...
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The New Yorker @newyorker.com · 13/08/2026
Scientists once thought that life-sustaining oxygen existed only near Earth’s surface. Then they detected it deep underground. www.newyorker.com/science/elem...
newyorker.com
The Mystery of Dark Oxygen
Scientists once thought that life-sustaining oxygen existed only near Earth’s surface. Then they detected it deep underground.
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Kartik Aiyer @kartiksaiyer.bsky.social · 13/07/2026
Happy to share our new paper on cable bacteria. Motivated by the lack of pure cultures, we developed a standardized artificial sediment system that supports repeated cultivation of freshwater and marine cable bacteria under controlled conditions. Link: doi.org/10.1093/isme...
doi.org
Artificial sediments enable reproducible cultivation and recapitulate ecological interactions of cable bacteria
Abstract. Cable bacteria are filamentous microbes that couple sulfide oxidation to oxygen reduction over centimeter distances via long-distance electron tr
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Magda(lena) Wutkowska @wutkowska.bsky.social · 07/07/2026
Isolation of Allocrenothrix methanica reveals distinct ecophysiologies of filamentous methanotrophs and adaptations to O2 limitation academic.oup.com/ismej/articl...
academic.oup.com
Isolation of Allocrenothrix methanica reveals distinct ecophysiologies of filamentous methanotrophs and adaptations to O2 limitation
Abstract. Ferdinand Cohn observed abundant filamentous bacteria in drinking water wells in 1870 that he named Crenothrix polyspora. Subsequent research has
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Jason Hickel @jasonhickel.bsky.social · 05/07/2026
I predicted that even if their AI found ways to improve efficiency, Google's energy use would go up, not down. Seven years later and this is where we're at:
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Ian Marshall @ianpgm.bsky.social · 03/07/2026
Four new Associate/Full Professor positions at Aarhus University @au.dk Faculty of Natural Sciences with focus on innovation, i.e. if you have especially strong links to the world outside academia (maybe you've been in industry for some years and are looking to come back?): www.au.dk/om/stillinge...
au.dk
Professor or Associate Professor within the natural sciences, with a focus on Innovation (4 positions) - Ledig stilling på Aarhus Universitet
Ledig stilling ved Natural Sciences, Aarhus Universitet
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Michael Sieber @michaelsieber.bsky.social · 01/07/2026
Have ideas for your own, independent research program in Theoretical Biology? Then come and join us as a Group Leader at the @mpi-evolbio.bsky.social in Plön, Germany!
mpg.de
Group Leader in Theoretical Biology (m/f/d)
Experience in Theoretical Biology, Applied Mathematics, Theoretical Physics
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Ilnam Kang @ilnamkang.bsky.social · 30/06/2026
A simple mathematical model for the discontinuity in average nucleotide identity distributions in prokaryotes doi.org/10.21203/rs....
doi.org
A simple mathematical model for the discontinuity in average nucleotide identity distributions in prokaryotes
Microbial species exist as discrete genomic clusters, and evidence of this is the well-documented discontinuity in average nucleotide identity distributions—the ANI gap. Today, thresholds within...
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Ian Marshall @ianpgm.bsky.social · 26/06/2026
Sampling in Fløjstrup Skov south of Aarhus with masters student Jeppe (left) and postdoc Justus (right).
Two men sampling sediment from a stream in a forest. The one on the left holds coring equipment that he has just used to collect sediment, while the other, standing in the stream, empties that sediment into a plastic tube. And empty 2L glass bottle is on the bank.
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Daan Speth @daanspeth.bsky.social · 26/06/2026
I'm happy to announce the release of GlobDB r232! This version contains 346,233 bacterial and archaeal genomes, based on 26 datasets. More info globdb.org 🦠🖥️🧬
globdb.org
home | GlobDB
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Amelia Rotaru @ameliarotaru.bsky.social · 17/06/2026
Check out this lovely piece of work by Jan V. Henkel and the AU team in collaboration with us at SDU and colleagues at AAU. Congrats Jan!!!! journals.asm.org/doi/10.1128/... Jan discovered the tiny microbes that make their home on ferromagnetic particles in the SMTZ of Baltic Sea sediments! 🦠 🧲 🦠
doi.org
Desulfatiglans-related bacteria associated with conductive mineral particles in marine subsurface sediments | mBio
Acetate is a central intermediate in the anaerobic breakdown of organic matter. In Baltic Sea sediments at and below the sulfate–methane transition zone, we observed acetate oxidation to carbon dioxid...
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Cameron Thrash @jcamthrash.bsky.social · 15/06/2026
Desulfatiglans-related bacteria associated with conductive mineral particles in marine subsurface sediments journals.asm.org/doi/10.1128/... #jcampubs
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Ian Marshall @ianpgm.bsky.social · 27/05/2026
Have a look at our new paper on sulfur metabolism in cable bacteria, first author Lea Plum-Jensen: academic.oup.com/ismej/advanc... It's an interesting case of a pathway gap being filled using AlphaFold and subsequently verified biochemically. @ismepublications.bsky.social
academic.oup.com
Distribution of a novel DsrEFH sulfur transferase suggests widespread sulfur oxidation capacity in sulfate reducers
Abstract. Microbial sulfur cycling is typically divided into an oxidative and a reductive branch, with microbes driving either sulfide oxidation or sulfate
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Jonathan Eisen @phylogenomics.bsky.social · 25/05/2026
A very important preprint to check out: The holobiont is not a useful model for most host-microbiome interactions By Gavin M Douglas an S. Andrew Inkpen ecoevorxiv.org/repository/v...
ecoevorxiv.org
The holobiont is not a useful model for most host-microbiome interactions
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Evgenii Protasov @evgenii-protasov.bsky.social · 22/05/2026
Extracellular electron transfer in cable bacteria enables growth rates comparable to aerobic respiration #microbiology #bacteria #MicroSky @natcomms.nature.com www.nature.com/articles/s41...
nature.com
Extracellular electron transfer in cable bacteria enables growth rates comparable to aerobic respiration - Nature Communications
In this study, the authors show that cable bacteria perform extracellular electron transfer via direct and flavin-mediated pathways, which enables growth under anoxic conditions at rates comparable to...
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Heidi Aronson, PhD @heidi-aronson.bsky.social · 21/05/2026
Published! Using thermodynamics, we proposed a new microbial metabolism: CH4 + CO to form acetate. This reaction is exergonic under a wide range of conditions and could potentially fuel life in serpentinizing systems and the deep subsurface. agupubs.onlinelibrary.wiley.com/doi/full/10....
agupubs.onlinelibrary.wiley.com
Acetogenic Methane‐Carbon Monoxide Comproportionation: An Exergonic but Unobserved Microbial Metabolism
Carbon comproportionation reactions are an underexplored class of carbon redox processes relevant to microbial energy conservation Methane-carbon monoxide comproportionation to acetate is exergon...
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Kartik Aiyer @kartiksaiyer.bsky.social · 21/05/2026
Happy to share our work in @natcomms.nature.com Link: www.nature.com/articles/s41... We show that cable bacteria can actively grow under anoxic conditions using extracellular electron transfer to insoluble electron acceptors, with growth rates comparable to aerobic respiration.
nature.com
Extracellular electron transfer in cable bacteria enables growth rates comparable to aerobic respiration - Nature Communications
In this study, the authors show that cable bacteria perform extracellular electron transfer via direct and flavin-mediated pathways, which enables growth under anoxic conditions at rates comparable to...
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Cameron Thrash @jcamthrash.bsky.social · 20/05/2026
Extracellular electron transfer in cable bacteria enables growth rates comparable to aerobic respiration www.nature.com/articles/s41... #jcampubs
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Center for Electromicrobiology @cemau.bsky.social · 14/05/2026
Are you a student looking for an exciting bachelor's, master's or Biology project? We recommend checking out the updated projects on CEM’s webpage: Join Us! You also find the projects on Biology - Aarhus University's Student Project Shop! 📍Find the available projects through the link in the comments
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Ian Marshall @ianpgm.bsky.social · 13/05/2026
In case anyone is curious: according to Perth Airport security, Vegemite counts as a liquid or a gel (not sure which one).
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Ian Marshall @ianpgm.bsky.social · 11/05/2026
bio.au.dk/om-institutt...
bio.au.dk
Tenure-track Assistant/Associate Professor/Professor in Ecophysiology and Ecology Department of Biology, Faculty of Natural Sciences, Aarhus University, Denmark - Ledig stilling på Aarhus Universitet
Ledig stilling ved Institut for Biologi, Aarhus Universitet
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Ulisse Cardini @symbiostoic.bsky.social · 11/05/2026
🪸 We're hiring a PhD student in microbial ecology of crustose coralline algae! Fully funded 3-year position jointly hosted at SZN Genova & MPI-MM Bremen, with fieldwork in Belize, Seychelles & Fiji. ⏰ Deadline: May 21, 2026 #PhD #MarineScience #Microbiology #OpenPosition
marinesymbiomes.eu
Open position: PhD scholarship in microbial ecology of coralline algae - Marine Symbiomes Research Group
We invite applications for a PhD student to work on the microbiomes of crustose coralline algae (CCA) across tropical mangrove–seagrass–reef corridors.
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Gonzalo Gomez Saez @ggomezsaez.bsky.social · 11/05/2026
Many ocean microbes have the genetic potential of consuming taurine, a key organosulfur compound, but it is unclear how this activity is linked to the worldwide decline in oxygen levels. Here, we found by 13C-DOS qSIP that taurine was only used as a C source in hypoxic waters of the Mariager Fjord.
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Ramunas Stepanauskas @rstepanauskas.bsky.social · 28/04/2026
Two positions at Aalborg University (Denmark) in microbial single cell genomics: Laboratory Engineer → aau.varbi.com/what:job/job... Bioinformatics Engineer → aau.varbi.com/what:job/job... Deadline: May 8, 2025 #Hiring #Microbiology #Bioinformatics #SingleCell #Microbiome #Denmark
aau.varbi.com
Bioinformatics Engineer in Microbial Single-Cell Genomics
Do you want to lead the development of bioinformatics infrastructure for a state-of-the-art research laboratory dedicated to exploring the amazingly abundant and diverse life of environmental microorg
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Kartik Aiyer @kartiksaiyer.bsky.social · 17/04/2026
Pleased to share our preprint on a cultivation system for cable bacteria using artificial sediments, removing the variability of natural samples. The system supports growth, serial transfer, and recapitulates key geochemical gradients and microbial interactions. www.biorxiv.org/content/10.6...
biorxiv.org
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Paul Rainey @paulbrainey.bsky.social · 09/04/2026
Multiple fully funded PhD/postdoc positions available: experimental evolution of tumour suppression, egalitarian & fraternal ETIs, jumbo phage ecology & genetics. Related EoIs welcome. Email CV/statement of motivation written in own words. Open until filled. Grateful for reposting 🙏
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Kartik Aiyer @kartiksaiyer.bsky.social · 11/04/2026
Excited to share our paper in @cp-trendsmicrobiol.bsky.social We explore how microbes can simultaneously use oxygen and alternative electron acceptors, reshaping how we think about respiration. We also discuss the evolutionary context and how it can be studied. www.sciencedirect.com/science/arti...
sciencedirect.com
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes
Microorganisms have historically been classified as obligate aerobes or anaerobes, facultative anaerobes, or microaerophiles, reflecting differences i…
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Center for Electromicrobiology @cemau.bsky.social · 09/04/2026
Retreat day 1🌿 Yesterday, CEM arrived at MolsLab in beautiful sunshine, kicking off our annual 3-day retreat dedicated to deep dives into CEM’s key research areas. We spent the day in focused scientific group work across our core topics, bringing together diverse skills, backgrounds and disciplines
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Ella Sieradzki @sieravirus.bsky.social · 09/04/2026
Deadline is April 20th! Let’s get those viruses
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Beate Kraft @beatekraft.bsky.social · 07/04/2026
📣We have 5 PhD positions in hadal biogeochemistry and microbial ecology at the Danish Center for Hadal Research: lnkd.in/eJ6rp_Rk. 📣 Deadline: 4 May 2026 Please share widely! fa-eosd-saasfaprod1.fa.ocs.oraclecloud.com/hcmUI/Candid...
fa-eosd-saasfaprod1.fa.ocs.oraclecloud.com
PhD positions in hadal biogeochemistry & microbial ecology
Application deadline: 4 May 2026 at 23:59 hours local Danish time
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Amelia Rotaru @ameliarotaru.bsky.social · 24/03/2026
Glad to see our paper published in Nature Communications We discovered how novel marine microorganisms interact via geoconductors to produce methane. www.nature.com/articles/s41...
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LMU München @lmu.de · 18/03/2026
The world’s oceans are losing oxygen—one of the most serious consequences of climate change. 🌊 But what impact does this have on microorganisms and organic matter cycles?🚢 To find out, biogeochemist @ggomezsaez.bsky.social and his team are traveling to Jutland:
lmu.de
Climate change: when the ocean runs out of oxygen
Oxygen levels are low in many ocean regions. How does this affect organic matter cycling and microorganisms? In search of an answer, biogeochemist Gonzalo Gomez Saez journeyed by ship to Jutland.
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Amelia Rotaru @ameliarotaru.bsky.social · 18/03/2026
Please help spread the word about this 3-year postdoc position in my team. If your expertise & interest lie in studying how organisms from different domains of life (Bacteria and Archaea) communicate, come join us this summer in cozy Odense, Denmark. Job post: www.nature.com/naturecareer...
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Department of Biology, Lund University @biologylu.bsky.social · 17/03/2026
Open position as an Associate Senior Lecturer/Assistant Professor in Molecular Microbiology at the Department of Biology, Lund University. Apply before 28 April 2026. More info & application at lu.varbi.com/en/what:job/... Please share.
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Ian Marshall @ianpgm.bsky.social · 16/03/2026
Read about our cruise last year to Mariager Fjord with @ggomezsaez.bsky.social at www.lmu.de/en/newsroom/...
lmu.de
Climate change: when the ocean runs out of oxygen
Oxygen levels are low in many ocean regions. How does this affect organic matter cycling and microorganisms? In search of an answer, biogeochemist Gonzalo Gomez Saez journeyed by ship to Jutland.
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Heidi Aronson, PhD @heidi-aronson.bsky.social · 11/03/2026
How do you make methane from phosphite? Through interspecies H2 transfer! Our paper on lithosyntrophy is finally published - read about how we resolved the metabolic interactions in this phosphite oxidizing, methanogenic enrichment culture! #phosphorus #methanogenesis www.pnas.org/doi/10.1073/...
pnas.org
Lithosyntrophy: Obligate syntrophy in a phosphite-oxidizing, methanogenic culture | PNAS
The anaerobic conversion of organic matter to methane and carbon dioxide typically relies on obligate syntrophic interactions between bacteria and ...
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FEMS @femsmicro.org · 10/03/2026
Methane is the second most abundant greenhouse gas with a high heat-trapping capacity but a short lifespan in the atmosphere. So-called “microbial methane munchers” can lower methane emissions from diverse ecosystems, as explored on the new #FEMSmicroBlog. #FascinatingMicrobes
buff.ly
#FEMSmicroBlog: Exploring the metabolic activities of microbial methane munchers
#FEMSmicroBlog: So-called “microbial methane munchers” have the unique abilities to lower methane emissions from various ecosystems.
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Ella Sieradzki @sieravirus.bsky.social · 09/03/2026
I'm hiring my first postdoc! Apply by 20/4/26, position #20443. Seeking an environmental microbiologist with experience in metagenomics (preferably viromics) and molecular biology. Experience with targeted metabolomics is a plus. international.au.dk/about/profil...
international.au.dk
Postdoc in Soil viral ecology - Vacancy at Aarhus University
Vacancy at Department of Agroecology - Plant Pathology and Microbiology, Aarhus University
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