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hmenager.bsky.social

@hmenager.bsky.social
67 followers 88 following 16 posts
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BF Francis Ouellette @bffo.bsky.social · 28/06/2026
From @narjournal.bsky.social #NARWebServerIssue | bio.tools: an expanded web service for #Research #Software in the life sciences | #Bioinformatics #Webserver #OpenScience #BioTools #Education | 🧬🖥️🧪🔓🇦🇺🇨🇿🇩🇰🇪🇪 🇫🇷 🇳🇱 🇳🇴 🇷🇴 🇺🇸 CC/ @elixir-europe.org ⬇️ academic.oup.com/nar/advance-...
academic.oup.com
bio.tools: an expanded web service for research software in the life sciences
Abstract. Computational methods are central to the life sciences. The rapid growth and diversification of software tools and databases make it difficult to
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 17/06/2026
@jobim2026.bsky.social - Épisode 5/10 🚀 Venez découvrir notre poster « RDMkit efficiently manage metabarcoding and metagenomic data », qui sera présenté par Clara EMERY et Erwan Corre !
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 12/06/2026
@jobim2026.bsky.social - Épisode 2/10 🚀 Venez découvrir nos 3 posters #ABRomics, qui seront présentés par une délégation de l'équipe projet : Julie Lao Jean Mainguy Raphaël Tackx Amanda Dieuaide Claudine Médigue Philippe Glaser Fabien Mareuil !
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 27/05/2026
The #BOSC2026 schedule is up! (Posters will be added soon.) www.open-bio.org/events/bosc-...
open-bio.org
BOSC 2026 Schedule
BOSC 2026 keynote speakers KEYNOTE: Eric Green From the Human Genome Project to the Realization of Genomic Medicine: A Scientific, Medical, and Societal Journey KEYNOTE: Maryam Zaringhalam Sci...
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 30/04/2026
It’s not too late to submit your work to #BOSC2026! The Late Poster submission deadline is a week from today: Thursday, May 7. We’d love to hear about what you’re doing in the wide world of #OpenSource #Bioinformatics, #OpenScience, or #OpenData! 🍐 More info: www.open-bio.org/events/bosc-...
open-bio.org
Submit to BOSC 2026
BOSC 2026 Abstract Submission BOSC 2026, the 27th annual Bioinformatics Open Source Conference, will take place July 14-15 as part of ISMB 2026 in Washington DC. We hope you will join us in person o...
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 27/04/2026
We're excited that the OBF/BOSC CollaborationFest is returning on July 17–18, 2026, right after ISMB and #BOSC2026. This hybrid event will be hosted in downtown Washington, DC, not far from the ISMB venue. Learn more: www.open-bio.org/events/bosc-...
open-bio.org
CollaborationFest 2026
CollaborationFest 2026 will be a collaborative work event at which participants work together to contribute code, documentation, training materials, and challenging analysis problems and use cases. If...
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hmenager.bsky.social @hmenager.bsky.social · 24/04/2026
🧬 Join us for the @openbio.bsky.social @bosc.bsky.social CollaborationFest (CoFest), focused on open source and open science — happening right after #ISMB2026 and #BOSC2026! Registration (free!) and organization details can be found at: 🌐 www.open-bio.org/events/bosc-...
open-bio.org
CollaborationFest 2026
CollaborationFest 2026 will be a collaborative work event at which participants work together to contribute code, documentation, training materials, and challenging analysis problems and use cases. If...
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 23/04/2026
📢 Galaxy Advanced Training: Mastering Workflows, Automation, and Scalability: pre-registration open until June 5 2026!
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 30/03/2026
#genAI is changing everything, including the #OpenSource ecosystem. #BOSC2026 wants to hear your thoughts! Submit your abstract by April 9 to be considered for a talk. Read more: www.open-bio.org/posts/Open-S... Abstract submission: www.open-bio.org/events/bosc-...
An AI-generated claymation-style illustration of an elephant surrounded by large anthropomorphic pears expressing various emotions
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 17/03/2026
🎞️ ABRomics en images : retrouvez la nouvelle vidéo de présentation de la plateforme ABRomics ! 🔎 Pour découvrir les enjeux et activités ABRomics, visionnez la nouvelle vidéo de présentation du projet ! Ce nouveau support met en lumière les technologies et les services proposés par la plateforme.
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 05/03/2026
Time to think about submitting an abstract to #BOSC2026! The deadline for submitting talk/poster abstracts is April 9. (There is an additional late poster round that closes in May, but those late submissions won't be considered for talks.) www.open-bio.org/events/bosc-... #OpenSource #OpenScience
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 25/02/2026
#BOSC2026 is looking for sponsors! Your sponsorship helps BOSC advance open-source bioinformatics and open science and broaden representation (www.open-bio.org/obf-dei/). Info: open-bio.org/events/bosc/.... Please contact us for details about sponsorship levels and perks!
Monica Munoz Torres holds the BOSC 2025 posterBOSC Chair Nomi Harris by the BOSC 2024 poster
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Reposted by @hmenager.bsky.social
Bastian Greshake Tzovaras @gedankenstuecke.scholar.social.ap.brid.gy · 03/01/2026
This is so amazing: In 1970, the city of Paris organised a photography competition, splitting the city into more than 1700 squares of 250 meters length. Now you can browse the images taken in 1970 in this super cool/simple map, square by square! I already checked out my old neighborhood ❤️ […]
scholar.social
Original post on scholar.social
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 03/12/2025
📣🚀✨Toutes nos équipes et plateformes sont réunies depuis hier pour cette nouvelle édition du All-Hands IFB/ELIXIR-FR 2025 ! #ElixirFR25
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 07/11/2025
🚀👩‍💻🧑‍💻 End of this week of #BioHackEU25, organised by @elixir-europe.org , to advance all projects in synergy! Thank you to the IFB/ELIXIR-FR team (on-site and remotely), and to our colleagues at @genouest.bsky.social 👏
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ELIXIR Europe @elixir-europe.org · 03/11/2025
Today, a global community of hackers gathers in Berlin 🇩🇪 for the start of #BioHackEU25. Since 2019, over 2200 participants have gathered together for an intense week of collaboration to advance 275 projects. Read the news: loom.ly/6sE_kdI
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Réseau français de la recherche reproductible @reproductible-fr.bsky.social · 07/10/2025
👏 Many thanks to everyone who took part in the Replication Games on Friday, October 3rd! 6 teams joined the challenge, 5 in person and 1 online, bringing curiosity and collaboration to every step and making this event a truly inspiring collective experience around reproducibility & open science.
participants of the replication games held in Paris on october 3 2025 working on their article replications
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hmenager.bsky.social @hmenager.bsky.social · 02/10/2025
Congrats @abretaud.bsky.social
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Open Bioinformatics Foundation @openbio.bsky.social · 30/09/2025
An open letter about the recent cuts at GigaScience: www.open-bio.org/2025/09/30/2... (open for signatures until the end of October) #OpenScience #OpenData #GigaScience
Scott Edmunds cuts the cake at the 2025 GigaScience birthday party at ISMB/ECCB 2025
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 09/09/2025
Check out our #BOSC2025 report on @f1000publishing.bsky.social (It includes lots of pictures!) 🍐 f1000research.com/articles/14-...
f1000research.com
F1000Research Article: BOSC 2025, the 26th Bioinformatics Open Source Conference.
Read the latest article version by Nomi L. Harris, Karsten Hokamp, Jessica Maia, Hervé Ménager, Monia C Munoz-Torres, Tazro Ohta, Deepak Unni, Jason Williams, at F1000Research.
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 22/07/2025
Tiffany Callahan chairing the "Ontologies and knowledge representation" session at #BOSC2025 / #BOKR2025 @bokr.bsky.social
Tiffany Callahan
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 22/07/2025
Harry Caufield (@severaltimes.bsky.social) giving a BioPortal update at #BOSC2025 / #BOKR2025. You can try out BioPortal at bioportal.bioontology.org
Harry Caufield
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Reposted by @hmenager.bsky.social
GigaScience Journal @gigascience.bsky.social · 22/07/2025
Phill Read presenting RO-Crate in #BOSC2025, we’ve been increasing numbers of papers with associated RO-Crates, and have a summer internship working on it at the moment #ISMBECCB2025
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hmenager.bsky.social @hmenager.bsky.social · 22/07/2025
Now at #BOSC2025 BOKR joint session: Harry Caufield "BioPortal: a rejuvenated resource for biomedical ontologies". BioPortal is now 20!
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hmenager.bsky.social @hmenager.bsky.social · 22/07/2025
Last talk of the session, AutopeptideML2 from Raúl Fernández-Díaz at #BOSC2025 BOKR.
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hmenager.bsky.social @hmenager.bsky.social · 22/07/2025
And now Gavin Farrell presents the DOME registry at #BOSC2025 BOKR
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hmenager.bsky.social @hmenager.bsky.social · 22/07/2025
Barath Dandala presents BMFM-RNA at #BOSC2025 BOKR joint session
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hmenager.bsky.social @hmenager.bsky.social · 22/07/2025
Favour James presents textToKnowledgeGraph in the joint @bosc.bsky.social #BOSC2025 / BOKR session
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Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social · 22/07/2025
Honored to open day two of #BOSC2025 and BOKR joint session at #ISMBECCB2025 introducing @cmungall.bsky.social as our opening keynote: Open Knowledge Bases in the Age of Generative AI
Chris at the podium
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hmenager.bsky.social @hmenager.bsky.social · 21/07/2025
@susheelvarma.com presented "The ELITE Portal: A FAIR Data Resource For Healthy Aging Over The Life Span" at #ISMBECCB25 #BOSC2025, reminding me of github.com/pjotrp/bioin... in advocacy of unix philosophy for legal interoperability. This is a recurring (and good) pattern at @bosc.bsky.social!
github.com
GitHub - pjotrp/bioinformatics: Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics - pjotrp/bioinformatics
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hmenager.bsky.social @hmenager.bsky.social · 21/07/2025
@monimunozto.bsky.social presents Bridge2AI at #ISMBECCB25 #BOSC2025
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 21/07/2025
#CWL co-founder and project lead Michael Crusoe gave a moving tribute to Peter Amstutz, whose premature death was a great loss to the community. #BOSC2025
Michael Crusoe giving a tribute to Peter Amstutz
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hmenager.bsky.social @hmenager.bsky.social · 21/07/2025
Link to publication you might have missed during the @bosc.bsky.social #BOSC2025 talk "Analytical code sharing practices in biomedical research" from Serghei Mangul: doi.org/10.7717/peer...
doi.org
Analytical code sharing practices in biomedical research
Data-driven computational analysis is becoming increasingly important in biomedical research, as the amount of data being generated continues to grow. However, the lack of practices of sharing researc...
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hmenager.bsky.social @hmenager.bsky.social · 21/07/2025
From the #BOSC2025 organising committee chat during Christine Orengo's keynote:"it was a very good idea to start BOSC with a TED talk ;)"
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Varsha Khodiyar @varsha-khodiyar.bsky.social · 21/07/2025
@nomiharris.bsky.social kicking off #BOSC2025 at #ISMBECCB2025
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JOBIM 2025 @jobim2025.bsky.social · 20/06/2025
🖥️🧬 Le comité d'organisation de #JOBIM2025 remercie chaleureusement notre partenaire historique, l'Institut Français de Bioinformatique @ifb-elixir-fr.bsky.social, pour son soutien au congrès qui se tiendra du 8 au 11 juillet à Bordeaux. 1/3 ⤵️
france-bioinformatique.fr
IFB - Institut Français de BioinformatiqueVisit our TwitterVisit our LinkedInVisit our YouTube channelclosebarsangle-double-upangle-double-downlinkedinfacebookpinterestyoutubersstwitterinstagramfacebo...
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 05/06/2025
✨📰🗓️Thank you @elixir-europe.org , we look forward to welcoming you to the next All Hands Meeting in 2026! #ELIXIR26 ✨ @cnrs-idf-villejuif.bsky.social @cnrsbiologie.bsky.social @cea.fr @inserm.fr @inrae-france.bsky.social
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 13/06/2025
JOBIM 2025 - Épisode 3/13 🚀 Venez découvrir notre poster « BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme », par Annie Lebreton, Erwan Corre et le consortium #BYTE-Sea !
Bannière annonçant le poster "BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme" pour la prochaine édition de JOBIM 2025, du 8 au 11 juillet à Bordeaux
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 16/06/2025
JOBIM 2025 - Épisode 4/13 🚀 Venez découvrir notre poster «  Breaking Myths: The Reality of Galaxy’s Capabilities and Impact », qui sera présenté par Gildas Le Corguillé , Anthony Bretaudeau, Björn Grüning , le GT Galaxy et @bebatut.bsky.social !
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BF Francis Ouellette @bffo.bsky.social · 12/06/2025
From #Hal | Assessing #bioinformatics software annotations: bio.tools case-study | #OpenScience #FAIR 🧬 🖥️ 🧪 🔓 ⬇️ hal.science/hal-05096849v1
hal.science
Assessing bioinformatics software annotations: bio.tools case-study
Reproducibility and reuse of digital bioinformatics resources are essential for the development<p>of open and cumulative science, in line with FAIR principles. To search and reuse bioinformatics tools...
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David Monniaux @monniauxd.bsky.social · 14/06/2025
SAUVONS LE PALAIS DE LA DÉCOUVERTE www.change.org/p/sauvons-le... (Avis personnel : des musées comme le Grand Palais, il y en a plein à Paris. Il n'y a qu'un Palais de la Découverte.)
change.org
Signez la pétition
Sauvons le Palais de la découverte
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IFB/ELIXIR-Fr @ifb-elixir-fr.bsky.social · 11/06/2025
📣✨ Retrouvez les équipes de l’IFB à JOBIM Bordeaux du 8 au 11 juillet ! 🎉
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Simon Cauchemez @scauchemez.bsky.social · 05/06/2025
New postdoc positions with a number of exciting epidemic modelling projects opening in our Unit at @pasteur.fr in beautiful Paris. Deadline for applications: 26th June. research.pasteur.fr/en/job/postd...
research.pasteur.fr
Postdoctoral positions in epidemic mathematical/statistical modelling - Research
Job description We are recruiting postdocs to contribute to research projects in the Mathematical Modelling of Infectious Diseases Unit, at Institut Pasteur in Paris. The candidates will be expected t...
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Galaxy Project @galaxyproject.bsky.social · 25/04/2025
Two new tracks have been added to the Galaxy Training Academy 2025: Climate and Variant Analysis! Dive into climate data analysis or explore the world of variant analysis—both at your own pace, free, and fully supported via Slack channels during the event. training.galaxyproject.org/training-mat...
training.galaxyproject.org
Galaxy Training Academy 2025
The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their Galaxy data analysis skills. Over the course of one week, we offer a di...
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Eduardo Rocha @epcrocha.bsky.social · 16/04/2025
New postdoc position in our lab (2 y+): evolutionary genomics of integrons and MGEs with focus on vibrio-phage interactions. Great environment @pasteur.fr for science, career building. Super collaborators @celineloot.bsky.social @amazeld.bsky.social @fredoleroux.bsky.social 3 weeks to apply!
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 10/04/2025
We’re excited to share that Seqera (bsky.app/profile/seqe...) will be a Gold sponsor of #BOSC2025! Seqera is the driving force behind Nextflow, MultiQC, and the Seqera Platform — the modern biotech stack for scalable bioinformatics. Learn more on our sponsors page: www.open-bio.org/events/bosc/...
bsky.app
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ELIXIR Europe @elixir-europe.org · 11/04/2025
🏃 Last push for #BioHackEU25 project proposals! Don’t miss the great chance to work with 🙌 other #bioinformaticians. We welcomed project proposals 💡 focus on areas that support the work of ELIXIR, such as #FAIRdata, #metadata standards, #ontologies and more. 🔗 Submit by next Monday:
loom.ly
Projects
BioHackathon Europe projects
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hmenager.bsky.social @hmenager.bsky.social · 02/04/2025
We are hiring an RE in Bioinfo and Biostats for the COPAFLICT project! It seeks to improve knowledge of viral hemorrhagic fevers and offer new perspectives for their diagnosis and treatment. Come and work with us at the Hub in @institutpasteur.bsky.social ! See: hub-jobs2025.pasteur.cloud
hub-jobs2025.pasteur.cloud
Research engineer position(s) at the Bioinformatics and Biostatistics Hub of Institut Pasteur
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scicodes.bsky.social @scicodes.bsky.social · 30/03/2025
FREE hybrid event! Building the Future of Research Software: A SciCodes Symposium Apr 9, 2025 8:00am - 12:15pm Registration: docs.google.com/forms/d/e/1F... #astronomy #openscience #OpenSourceWeek Want to make research s/w better? We want to hear your ideas! More info in 🧵:
docs.google.com
Registration for "Building the Future of Research Software: A SciCodes Symposium"
TL/DR: Use this form to register for the April 9, 2025 SciCodes Research Software Symposium: "Building the Future of Research Software". The survey has two sections: questions on general information a...
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Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 31/03/2025
If you want to attend #BOSC2025 but the registration fee is a barrier, consider applying for one of these financial support opportunities. Please note that the deadline for OBF Event Fellowship applications is *April 1*! More info: www.open-bio.org/posts/financ... @openbio.bsky.social
Part of the audience at BOSC 2023, with Jason Williams standing in the center aisle
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