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Heli Juottonen

@helijuottonen.bsky.social
769 followers 904 following 54 posts

Microbial ecologist (PhD, docent) turned data scientist. R, HPC, biocrusts, peatlands. Ukulele & melodeon player, concertgoer, stargazer.

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Reposted by Heli Juottonen
Ari Pekka Mähönen @apmahonen.bsky.social · 09/10/2026
Tenure track assistant/associate professor positions open in my university. Within life sciences, INCLUDING PLANT SCIENCES. Please RT jobs.helsinki.fi/job/Helsinki...
jobs.helsinki.fi
Three tenure track assistant/associate professors in life science, HiLIFE
Three tenure track assistant/associate professors in life science, HiLIFE
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Aileen Berasategui @berasymbionts.bsky.social · 08/10/2026
Truly wonderful department, amazing research and even better colleagues! Great opportunity at @vuamsterdam.bsky.social!! 🐌🦋🦇🐘🪰🪲🪱🍄‍🟫🐗🦠🧬🌇
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Joel Pick @joelpick.bsky.social · 06/10/2026
🚨Exciting project alert!!🚨 Are you interested in data and code sharing in Ecology and Evolution? @eivimeycook.bsky.social and I are running a hackathon to quantify data and code availability and sharing quality across 90 society journals, and looking for people who want to be involved.
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ISME - International Society for Microbial Ecology @isme-microbes.bsky.social · 01/10/2026
🌍 Looking to take your microbial ecology research abroad? MSc/PhD students and postdocs are invited to apply for the ISME Scholar Mobility Fund to support international research, training and collaboration. 🦠 isme-microbes.org/public/profi... 📅 Apply by 21 October 2026 #MicrobialEcology
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Systems Ecology @systems-ecology.bsky.social · 21/09/2026
🌱 Systems Ecology is now live! A new independent, researcher-run, diamond OA journal for ecological research through systems science. Free to read. Free to publish. No APCs. We are now open for submissions: systems-ecology.org Please help spread the word!
systems-ecology.org
Systems Ecology
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Luonnonsuojeluliitto @luonnonsuojelu.bsky.social · 18/09/2026
Teimme tietopyynnön Tukesille ja siitä selvisi, että kaivosyhtiöt pyrkivät jo 15:lle Natura 2000 -ohjelmassa suojellulle alueelle. Tiedotteemme: www.sll.fi/ajankohtaist... #viiankiaapa #natura2000 #luonnonsuojelu #kaivokset 1/8 Kuva: Jorma Luhta www.sll.fi/ajankohtaist...
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Julia Kemppinen @juliakemppinen.bsky.social · 18/09/2026
Open position! Postdoc project on snow modelling and Arctic ecosystems ❄️🌿🌡️💧 3-yr position with assistant prof @niittynen.bsky.social at @oulu.fi ! See the link and apply by 15.10.2026 oulunyliopisto.varbi.com/fi/what:job/...
oulunyliopisto.varbi.com
Postdoctoral Researcher in snow and microclimate processes of cold-climate ecosystems
We are now looking for a Postdoctoral Researcher in snow and microclimate processes of cold-climate ecosystems for a 3-year fixed-term position to join us in the Faculty of Technology, Water, Energy a
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James Bradley @drbradbrad.bsky.social · 15/09/2026
Paid Masters M2 internship: Microbial dormancy in the cryosphere 🦠❄️🌡️ @erc.europa.eu #ERC_SIESTA @lassezj.bsky.social 📢 PLEASE RT 🧬 Microbial activity measurements, flow cytometry, ecological interpretation ☀️ Marseille, France @mioceanologie.bsky.social ‼️ Apply via email ASAP & before 15 Oct
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CodeRefinery @coderefinery.org · 15/09/2026
📚 What will you learn at CodeRefinery? (8/8) How do you keep research code organized as projects grow? Day 6 features a hands-on type-along where you'll learn how to structure code and make components reusable across scripts, packages, and notebooks. 🔗 coderefinery.github.io/modular-type...
coderefinery.github.io
Modular code development - Making reusing parts of your code easier — Modular code development
Episodes
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John Spear @spearmicrobe.bsky.social · 04/09/2026
Microbial Diversity 2026 @mblscience.bsky.social was outstanding this year! If you’d like to join us next year, apply in late January, early February and spread the word. www.youtube.com/watch?v=7VUY...
youtube.com
Focus on: Microbial Diversity at Marine Biological Laboratory
YouTube video by Marine Biological Laboratory
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Johannes Cairns @jcairns.bsky.social · 06/09/2026
Wanna become professor in medical bacteriology at Uppsala? www.uu.se/en/about-uu/...
uu.se
Professor in Medical Bacteriology - Uppsala University
Professor in Medical Bacteriology, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology, Uppsala University
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Erik Svensson @evolodonata.ecoevo.social.ap.brid.gy · 05/09/2026
Come join me and my colleagues at the Department of Biology at #LundUniversity in #Sweden! New position as Senior Lecturer in Computational Biology just announced. Apply or spread the word to all interested candidates! […]
ecoevo.social
Original post on ecoevo.social
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CodeRefinery @coderefinery.org · 02/09/2026
🚀 Less than three weeks until the next CodeRefinery workshop! Join us to explore reproducible computational research and practical tools for better research. 👋 🔗 coderefinery.github.io/2026-09-22-w... 📅 Watch this space as we introduce the lessons one by one over the coming days. #OpenScience
indico.neic.no
Online CodeRefinery workshop September-October 2026
Registration page for the CodeRefinery workshop September-October 2026 To complete your registration, you need to enter your registration details by clicking the "Register now" button below. You may…
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Ian Marshall @ianpgm.bsky.social · 01/09/2026
Two PhD positions with me at Aarhus University in Denmark are now open for applicants: phd.nat.au.dk/for-applican... Deadline November 1. Thanks @carlsbergfondet.dk!
phd.nat.au.dk
Anaerobic growth of aerobic methane-oxidising bacteria
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Seppo @sepponet.bsky.social · 27/08/2026
Unique #Natura2000 protected mire #Viiankiaapa in Finnish Lapland is threatened. The mining company #AngloAmerican wants to open a huge #mine there & say they can #ecologically #compensate the damages. How can you replace an irreplaceable #wetland? #birds #wilderness www.seppo.net/e/mining-com...
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Natalie Cooper @nhcooper123.bsky.social · 26/08/2026
Are you passionate about code integrity and accessibility? Do you have skills in R, Python or Julia? Why not apply to be one of our new Code Integrity and Accessibility AEs? Open to any career stage. Details here: apply.workable.com/britishecolo... (sadly not paid, but comes with nice perks)
apply.workable.com
Associate Editor (Code Integrity and Accessibility) - British Ecological Society
Volunteer role: Associate Editor (Code Integrity and Accessibility) Organisation: British Ecological Society – Methods in Ecology and Evolution Term: 3 years Closing date: 25th Sept 17.00 BST Location...
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Heli Juottonen @helijuottonen.bsky.social · 25/08/2026
Researchers using R in Finland: Are your R analyses taking forever or getting stuck with large datasets? Not sure how to get started with R on CSC's supercomputers? Join our free hybrid course High Performance R' 7.-8.9.2026. A CSC account and some R experience is required. csc.fi/en/training-...
R code where sequential line of code is made parallel with future_map.
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Heli Juottonen @helijuottonen.bsky.social · 25/08/2026
Researchers using R in Finland: Are your R analyses taking forever or getting stuck with large datasets? Not sure how to get started with R on CSC's supercomputers? Join our free hybrid course High Performance R' 7.-8.9.2026. A CSC account and some R experience is required. csc.fi/en/training-...
R code where sequential line of code is made parallel with future_map.
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Heli Juottonen @helijuottonen.bsky.social · 18/08/2026
The ukulele festival season continues: Our ukulele band had lots of fun playing at the first Estonian ukulele festival last weekend. Such a friendly event with 90 uke players on the first try! Warmly recommended.
Wooden table and benches under a wooden roof, open at the back with grass and trees visible. Colourful flags hang across the space. Text at the top says Kepsleva Poni Kõrts.A tiny ukulele hanging from the side of a wooden pillar. Several people sitting on benches with ukuleles further away. Wooden roof above.Lots and lots of ukuleles in their cases and bags hanging against a wooden wall.Group of people playing ukuleles on a stage in front of a log wall and below a wooden roof. A couple of rows of people sitting and watching. Colourful flaglines across the room. A vase of flowers on a table in front right.
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CodeRefinery @coderefinery.org · 18/08/2026
Beyond workshops, CodeRefinery is a community of research software enthusiasts. Ask questions, discuss tools, and exchange experiences around research software development and teaching, share/find job ads and events in our Zulip chat. -> coderefinery.zulipchat.com #communitychat #RSEng
Zulip sidebar showing community discussion channels on research software engineering, AI in research, AI ethics, and documentation.
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Antti Karkman @anttikarkman.bsky.social · 17/08/2026
Open postdoc position in my group. I’m looking for someone with computational and/or wet-lab experience. Previous work on (environmental) AMR is considered a plus. Please share. jobs.helsinki.fi/job/Helsinki...
jobs.helsinki.fi
Postdoctoral researcher in microbiology
Postdoctoral researcher in microbiology
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Emil Hvitfeldt @emilhvitfeldt.bsky.social · 14/08/2026
The slidecrafting workshop earlier this week was a success! Happy to see so many community members joining, learning and sharing! while we wait for the recording to come online you can look at all the material as we wait emilhvitfeldt.github.io/workshop-sli... #quarto #slidecrafting
emilhvitfeldt.github.io
Slidecrafting Workshop
Making beautiful slides with reveal.js and Quarto
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Aki Vehtari @avehtari.bsky.social · 13/08/2026
All four books I've co-authored are freely available online for non-commercial use: - Bayesian Workflow at avehtari.github.io/Bayesian-Wor... Links to other three books are in the quoted post 👇 (too many books to fit in one post!)
avehtari.github.io
Bayesian Workflow book: Website – Bayesian Workflow book
Website for the Bayesian Workflow book by Gelman, Vehtari, McElreath, et al. — case studies, code, and exercises in R and Stan.
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CodeRefinery @coderefinery.org · 06/08/2026
We run CodeRefinery workshops twice a year for researchers who code. Hands-on, collaborative, and focused on real research software practices. Next workshop coming up in September: coderefinery.github.io/2026-09-22-w... #RSEng #OpenScience #OpenEducation
CodeRefinery workshop webpage showing dates, workshop information, and key links for livestreams, installation, lesson materials, and participant resources.
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Heli Juottonen @helijuottonen.bsky.social · 09/08/2026
Met today in the forest: a snake, a moose, and this incredibly weird slime mold (Stemonitis fusca).
Many small clusters of brown tufts on leaf and needle litter.
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The Probst Lab @probstlab.bsky.social · 07/08/2026
We're looking for a Postdoctoral Researcher (f/m/d) for the ERC Synergy project “Archean Park”! 📍 Location: Essen, Germany ⏱ Duration: 36 months (Full-time | EG 13 TV-L) 📅 Start Date: As soon as possible ⏰ Application Deadline: September 2, 2026 www.uni-due.de/karriere/ste...
uni-due.de
Stellenausschreibung
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Digital S. Pumpkins @digitalprophet.online · 04/08/2026
Attention: Full episodes of #babylon5 are now available on the official B5 youtube channel. If you have not already watched the complete B5, now is the time. The greatest scifi show ever produced, now on the tubes. I dunno how @straczynski.bsky.social pulled this off. I suspect skullduggery.
m.youtube.com
Full Episodes - YouTube
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Dr Dr Oona Snoeyenbos-West @oonawest.bsky.social · 28/07/2026
journals.asm.org/doi/10.1128/...
journals.asm.org
Mapping the soil microbiome functions shaping wetland methane emissions | mSystems
Soil microbial ecology is increasingly recognized as essential to climate mitigation, but realizing its full potential requires shifting from static genome inventories to dynamic assessments of microb...
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Heli Juottonen @helijuottonen.bsky.social · 27/07/2026
A definite hightlight of the summer for the 3rd year in a row: Pieni Ukulelefestivaali (small ukulele festival) in Mathildedal, Teijo. A little bit rainier this year but an amazing warm atmosphere. Thank you friends & organizers and Matildankartano!
Small covered stage on the left with three people playing ukuleles and singing. The stage is surrounded by tall trees and a garden with flowers. People watching sitting on benches.Large group of people playing ukuleles on a covered stage under tall trees. A colourful flag line above the stage.Five people playing ukuleles or drums on a small covered stage under tall trees. Cherry tree with cherries in the foreground in top left.Two alpacas eating grass on a field. A big old building partly covered by trees in the background.
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Heidi Burdett @hlburdett.bsky.social · 18/07/2026
** JOIN US! ** @umeaunimarine.bsky.social is hiring! - Research Assistant - #PhD - #Postdoc - Operational & Education Coordinator 📍Umeå Marine Sciences Centre, Sweden 📆Deadlines in July/August 2026 🔗 www.nature.com/naturecareer... 🦑🧪🌎 @nickkamenos.bsky.social @umeauniversitet.bsky.social
Join us in Sweden! Multiple positions at Umeå Marine Sciences Centre! Deadlines in July & August 2026. Plus three images of divers samplnig a coral reef, a scientist sampling water through sea ice, and a measuring buoy in the ocean.
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Peatland ECR Action Team @peatlandecr.bsky.social · 16/07/2026
Attention #ECR 📣 Two weeks left to apply for this season’s #PeatNeeds funding!💰 #peatlands #wetlands #studentlife #phdlife
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Radovan Bast @radovan.xyz · 13/07/2026
If you really need to visit an x/twitter URL without having an x account and without giving that site your data, replace `x.com` by `twiiit.com`. More info: twiiit.com - thanks to @chr15m.bsky.social for this tool which finds an available nitter instance.
twiiit.com
Redirecting proxy for Nitter (alternative Twitter frontend)
Twiiit picks a random Nitter instance so you can browse Twitter privately.
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Journal of Ecology @journalofecology.bsky.social · 07/07/2026
🚨Journal of Ecology is seeking an Associate Editor with data integrity expertise! 📈 join us in improving the clarity, transparency, & accessibility of ecological research. 🌷more information on the role and how to apply can be found here 👉️ buff.ly/R8z4TLe
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Ian Marshall @ianpgm.bsky.social · 03/07/2026
Four new Associate/Full Professor positions at Aarhus University @au.dk Faculty of Natural Sciences with focus on innovation, i.e. if you have especially strong links to the world outside academia (maybe you've been in industry for some years and are looking to come back?): www.au.dk/om/stillinge...
au.dk
Professor or Associate Professor within the natural sciences, with a focus on Innovation (4 positions) - Ledig stilling på Aarhus Universitet
Ledig stilling ved Natural Sciences, Aarhus Universitet
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Katharina Kujala @kkujala.bsky.social · 01/07/2026
#MicroSky Please share with your network: We have a 4-year PhD position open at the Natural Resources Institute Finland. Come work with me and my team in deep peat in Pallas, Lapland. Mountains, swamps and microbes, what more could you ask for? 🦠
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Martina Schlaipfer @knowyouronion.bsky.social · 29/06/2026
One month left to apply for the summer round it @peatlandecr.bsky.social 2026 #PeatNeeds micro grants. It's a really easy application process, so go check it out if you are in need of a small financial boost as summer fieldwork kicks off.
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CSCfi @csc.fi · 29/06/2026
🔥🇫🇮 Finland’s new national supercomputer Roihu is now open for research use! Roihu will triple Finland's national computing capacity, enabling the international competitiveness of Finnish research. It will replace previous supercomputers by the end of the summer. 🔗 csc.fi/en/news/supe...
csc.fi
Supercomputer Roihu is now open for research use - CSC
Finland's new national supercomputer Roihu is now open for researchers’ use. It replaces the previous supercomputers Mahti and Puhti. Read more.
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Emil Hvitfeldt @emilhvitfeldt.bsky.social · 17/06/2026
Come join me for a all new slidecrafting workshop! 2 hours of all new content, teaching you to go from zero to hero in quarto slides! It is free and open to anyone, very minimal quarto knowledge required, we are starting with the basics! pos.it/slide-wrkshp #quarto #slidecrafting
pos.it
Slidecrafting Workshop with Emil Hvitfeldt
This will be a 2-hour workshop (with a short break) led by Emil Hvitfeldt all about making great slides in Quarto! Wed, Aug 12, 2026 12:00 PM EDT
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Bioconductor @bioconductor.bsky.social · 05/06/2026
What an amazing few days in Turku at #EuroBioC2026! 🇫🇮 This year's conference brought together 147 participants from 23 countries, showcasing the diversity of the Bioconductor community. A huge thank you to everyone who made EuroBioC2026 memorable. See you in Basel for EuroBioC2027!
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Heli Juottonen @helijuottonen.bsky.social · 08/06/2026
Attended my first EuroBioconductor conference in Turku last week and hope to go to the next ones too! Friendly and welcoming atmosphere, good discussions, and plenty of microbiome talks. 🤩
Sign on the street pointing the way to EuroBioconductor 2026 conference. Conference logo with a castle in the background and a pink duck-pig in the river in the foreground.A person wearing a cape presenting in an auditorium. Slide on the big screen lists things of interest related to Finland, such as git, Linux and Kimi Räikkönen.Cake with berries and cream on top, and the Bioconductor logo and the number 25.Aura Raulo presenting in an auditorium. Slide title is Many things spread from individual to another through contact networks
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Maliheh Mehrshad @mehrshmali.bsky.social · 04/06/2026
🔬 We have an open PhD position at SLU Uppsala! We're looking for a curious & driven PhD student to join the #ECOPHARM project funded by @kawresearch.bsky.social and investigate plasmid-dependent phages in aquatic ecosystems. Pls share with anyone who might be interested! www.slu.se/en/about-slu...
slu.se
Diversity of Plasmid-Dependent Phages in Aquatic Ecosystems | slu.se
SLU - Science and Education for Sustainable Life
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NL Institute of Ecology NIOO-KNAW @niooknaw.bsky.social · 04/06/2026
Do you want to use your experience with AI to help ecological research? The Netherlands Institute of Ecology is looking for an AI engineer in ecology. Interested? Or know someone who is? Apply to the vacancy by 14 June: nioo.knaw.nl/en/vacancies...
nioo.knaw.nl
AI engineer in ecology
The Animal Ecology Department has several ongoing data and software-related projects that already integrate AI, LLM, and machine learning approaches into our work. Many of these projects will benefit ...
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Peatland ECR Action Team @peatlandecr.bsky.social · 02/06/2026
Happy World Peatlands Day!! #peatECR #Wetlands
Photo collage of different wetland types and plants to be found throughout the world.
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Jan Broder Engler @jbengler.de · 31/05/2026
In case you ever wondered about the differences between magrittr pipe and base pipe 🤔 This table is taken from a great stackoverflow answer by @GeorgKindermann stackoverflow.com/questions/6763302… #rstats #dataviz #phd
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Jarno Vanhatalo @jarnovanhatalo.bsky.social · 07/05/2026
We are looking for Ecological Statistician to work on long-term biodiversity and ecosystem functioning data jobs.helsinki.fi/job/Helsinki...
jobs.helsinki.fi
Ecological Statistician
Ecological Statistician
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Kristina Jonas @krijonas.bsky.social · 06/05/2026
We’re hiring! 🇸🇪🔬
 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!
su.varbi.com
Biträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processer
Institutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin
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Prof. Ruth Ley FRS @microbiome.bsky.social · 03/05/2026
Come and work with us in a beautiful corner of Germany: 5 years of funding for your microbiology research and lots of great colleagues 🦠🧫
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Tominaga K. (tomiken) @pacyc184.bsky.social · 02/05/2026
Beyond methanogenesis: expanding roles for methanogenic archaea: Trends in Microbiology www.cell.com/trends/microbiology/ab…
cell.com
Beyond methanogenesis: expanding roles for methanogenic archaea
As key players in anoxic environments, methanogenic archaea account for the vast majority of biogenic methane emissions and play important roles during organic matter mineralization. Growing evidence indicates potential for broader ecological roles beyond methanogenesis. This review summarizes the physiology of biogeochemically relevant transformations of iron minerals, humic acid, biochar, and toxic heavy metals/metalloids. We examine how methanogenic archaea couple carbon cycling with other element cycles through methanogenic pathways and electron transfer processes. We also discuss known and potential molecular mechanisms that underlie these interactions. Furthermore, we highlight the discovery of the reversal of methanogenesis driven by extracellular electron transfer and its potential for methane bioconversion technologies. This work underscores the physiological versatility of methanogenic archaea, suggesting their diverse roles in biogeochemical cycles.
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Ashish Malik @ashish-malik.bsky.social · 30/04/2026
My first single author article!! I was invited by Nature Reviews Microbiology journal to write a research highlight on a historical paper that was influential to me. I chose the Kallenbach 2016 paper on microbial-derived soil organic matter formation. www.nature.com/articles/s41...
nature.com
Microorganisms lock up carbon in soil - Nature Reviews Microbiology
In this Journal Club, Ashish Malik discusses a paper showing that soil microorganisms build stable soil organic matter.
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Amelia Rotaru @ameliarotaru.bsky.social · 22/04/2026
8 more days left to apply for this 3-year postdoc position. Please repost! The position offers a lot of freedom to test new ideas about how archaea and bacteria communicate & sense the extracellular environment.
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