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Harm Nijveen

@harmn.bsky.social
180 followers 271 following 3 posts

Bioinformatics, gene expression, software development, QTL causal gene prioritization. Wageningen University.

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Reposted by Harm Nijveen
Marnix Medema @marnixmedema.bsky.social · 18/09/2026
Excited that our @w-u-r.bsky.social Bioinformatics team is involved in three funded projects in the NWO KIC Biochemical Diversity Programme. Kudos to @jjjvanderhooft.bsky.social for his leadership on the TERRAPATH project. Looking forward to fun collaborative science! www.wur.nl/en/news/nwo-...
wur.nl
NWO funding for research into biochemical alternatives
Four WUR projects receive NWO funding: one project investigates natural compounds for new flavours and fragrances, and two projects investigate more sustainable crop protection.
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Marc Somssich @somssich.bsky.social · 03/09/2026
Another #PlantScience job here @kwsgroup.bsky.social! We need a seed physiology expert in our seed research team. This is a full-time, permanent position here at our headquarters in Einbeck. Expertise in Seed Physiology and Germination are needed. #PlantSciJob #PlantSciJobs
jobs.kws.com
Scientist Seed Research (m/f/d)
Scientist Seed Research (m/f/d)
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Marnix Medema @marnixmedema.bsky.social · 04/08/2026
New postdoc opportunity in our team! Topic is computational analysis of (meta)genomic data to study evolution of plant-microbiome interactions. Part of the AEGIS consortium (aegisearth.bio/en). Apply here: www.wur.nl/en/vacancy/p... Please RT!
wur.nl
Postdoc on computational (meta)genomic analysis
Climate change is one of the greatest challenges for global food security, requiring new approaches to understand and harness the natural diversity that enables plants and their associated microbiomes...
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Hubrecht Institute @hubrechtinstitute.bsky.social · 30/07/2026
Applications for the Hubrecht International PhD program are open until September 15! PhD students at the Hubrecht work on various themes, including ‘Developmental biology and regeneration’. Curious what kind of questions PhD students Rahul and Andy work on? Read the comments! www.hubrecht.eu/hipp/.
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Marnix Medema @marnixmedema.bsky.social · 20/02/2026
Come join us again in a next round of this massive online open science community effort! 💪 Sign up using the link in the thread. It’s great fun, and really helps the scientific community. What more can you ask? 🙂
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Dolf Weijers @dolfweijers.bsky.social · 28/01/2026
www.wur.nl/en/vacancy/f... Become our new colleague (and next door neighbor) and lead a chair/group/department of Biophysics at Wageningen University. Reach out to me for info and please spread!!!
wur.nl
Full Professor and Chair Laboratory of Biophysics
We are looking for a Full Professor in the Biophysics chair group, part of Wageningen University & Research (WUR)
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EMBL-EBI @ebi.embl.org · 08/12/2025
Paid internship opportunity for Master’s students in the Netherlands 🇳🇱 If you’re studying computer science, bioinformatics or molecular biology, this could be the perfect springboard for you. A collaboration with the Embassy of the Kingdom of the Netherlands. www.ebi.ac.uk/about/jobs/i...
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Marc Somssich @somssich.bsky.social · 01/12/2025
We are looking for a Head of Cell Biology here at @kwsgroup.bsky.social Vegetables. This is a permanent, full-time position located in Wageningen, Netherlands. jobs.kws.com/job/Wagening... #PlantScience #PlantSciJobs #PlantScienceJobs #PlantCellBiology #PlantBreeding #PlantSciJob #PlantScienceJob
jobs.kws.com
Head of Cell Biology KWS Vegetables
Head of Cell Biology KWS Vegetables
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 24/11/2025
We (Nordborg & Weigel labs) need input on the next generation of genome browsers & data download modes for the #Arabidopsis #1001GenomesPlus project. We have now a curated collection of over 500 long read genomes. Please help us by filling out this questionnaire: docs.google.com/forms/d/e/1F...
docs.google.com
Next generation of 1001 Genomes Plus browser and data download
Please indicate all features you would like to see in a browser that displays features of completely sequenced Arabidopsis thaliana genomes
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The Plant Cell @theplantcell.bsky.social · 24/11/2025
Rational design of induced regeneration via somatic embryogenesis in the absence of exogenous phytohormones (Jana Wittmer, Menno Pijnenburg, Tristan Wijsman, Sieme Pelzer, et al) doi.org/10.1093/plce... #PlantScience @aspbofficial
doi.org
Rational design of induced regeneration via somatic embryogenesis in the absence of exogenous phytohormones
Stem cell transcription factors synergistically induce regeneration involving somatic embryogenesis and can break recalcitrance in Arabidopsis and pepper w
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Marnix Medema @marnixmedema.bsky.social · 22/09/2025
New preprint out by #RobertKoetsier, the first of his PhD project, on assessing the use of cross-species coexpression analysis to identify primary and secondary metabolic interactions in microbiomes: www.biorxiv.org/content/10.1...
biorxiv.org
Using cross-species co-expression to predict metabolic interactions in microbiomes
In microbial ecosystems, metabolic interactions are key determinants of species’ relative abundance and activity. Given the immense number of possible interactions in microbial communities, their expe...
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PLOS Biology @plosbiology.org · 31/07/2025
Elucidating #plant #Biosynthetic pathways: @jjjvanderhooft.bsky.social @marnixmedema.bsky.social &co develop #MEANtools, an unsupervised computational workflow that integrates #MultiOmics data to predict #metabolic pathways by linking transcripts to metabolites @plosbiology.org 🧪 plos.io/4odL94g
Detection of functional clusters (FCs) specific to the phenylalanine (PAL) and p-coumaroyltyramine (THT) pathways. Top left: Network depicting the relationship between transcripts and mass signatures within the PAL FC. Bottom left: Network illustrating the interplay between transcripts and mass signatures within the THT FC. Top right: Heatmap illustrating the expression levels of all transcripts within the PAL and THT FCs. Upper middle right: Heatmap displaying the abundance of all mass signatures present in the PAL and THT FCs. Lower middle right: Correlation matrix highlighting the correlations among transcripts and mass signatures within the PAL FC. Bottom right: Correlation matrix displaying the relationships between transcripts and mass signatures within the THT FC, including Mutual rank and transformed edge weights.
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Vandepoele lab @vandepoelelab.bsky.social · 16/07/2025
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC
vandepoelelab.be
Jobs | Vandepoele Lab
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Abdel Abdellaoui @dr-appie.bsky.social · 13/03/2025
I'm developing a strategic 1-on-1 game called Base Pair™ – based on biologically accurate rules 🧬🎲 Want to play and give feedback? Reply to this tweet (or RT), and I might send you a free handmade beta copy! (I have a limited nr right now, but more are on the way)
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EvolDir @evoldir.bsky.social · 20/05/2025
Wageningen University seeks a postdoc for a 2-year project on phage-host-superhost evolution using spatially explicit modeling. PhD required. Apply: www.wur.nl/en/vacancy/postdoctoral-… #postdoc
wur.nl
Postdoctoral researcher - Interacting scales in host-pathogen-superhost coevolution
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Monica L Garcia Gomez @moneralee.bsky.social · 12/05/2025
PhD Position in Modelling Regulation of Plant Stress Responses across Species!! 🌱🌽🌾🥬🌡️🌡️ Apply before June 16 to join this exciting project with Kirsten ten Tusscher in the context of CropXR!! www.uu.nl/en/organisat...
uu.nl
PhD Position in Modelling Regulation of Plant Stress Responses across Species
Join us to model plant stress responses and help breed climate-resilient crops in a collaborative, interdisciplinary research environment!
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Anne Kupczok @annecmg.bsky.social · 10/04/2025
Join our symposium The evolution of microbial pangenomes at @eseb2025.bsky.social with @bjesseshapiro.bsky.social and @annadewar.bsky.social (co-organized with @fbaumdicker.bsky.social and Jaime Iranzo) eseb2025.com/call-for-abs...
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Femke de Jong @plantenzo.bsky.social · 08/04/2025
Farmers and researchers prime seeds to get an even germination. Now researchers from the Netherlands show in New Phytologist that priming puts the available mRNA in the translation starting blocks. Read more about this study on my blog plantenzo.net/2025/04/08/s... 🧪 #PlantScience
plantenzo.net
Seeds in the starting blocks
Farmers and researchers prime seeds to get an even germination. Now researchers from the Netherlands show in New Phytologist that priming puts the available mRNA in the translation starting blocks.
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Patricija Gran @gran4726.bsky.social · 28/03/2025
Our research published in @newphyt.bsky.social titled "Unravelling the dynamics of seed‐stored mRNAs during seed priming" (nph.onlinelibrary.wiley.com/doi/full/10....) explores how hydropriming affects mRNA dynamics, enhancing germination but reducing longevity. Thanks to all my co-authors!
nph.onlinelibrary.wiley.com
Unravelling the dynamics of seed‐stored mRNAs during seed priming
Seed priming is a pre-sowing treatment that enables more efficient and uniform seed germination; however, it negatively affects seed longevity. In this work, the mRNA dynamics underlying a hydroprim...
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Harm Nijveen @harmn.bsky.social · 18/03/2025
We invite motivated candidates to apply for a PhD or Postdoctoral position focusing on the analysis of single cell RNA-seq, tomo-seq, and degradome sequencing data in Arabidopsis thaliana seeds. Reposting is appreciated :) www.wur.nl/en/vacancy/p...
wur.nl
Postdoc/ PhD student Spatial and single cell seed transcriptomics
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Marnix Medema @marnixmedema.bsky.social · 14/03/2025
Ten days left to apply!!
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Daniel Probst @skepteis.bsky.social · 14/03/2025
We're offering a fully funded PhD at the intersection of ML/AI and the natural sciences with a focus on sustainability and chemistry. You'll work at WUR in the Netherlands, ranked #3 in environ. sciences, #1 in agricultural science, #38 in life sciences (QS). Apply here: www.wur.nl/nl/vacature/...
Photo of the inside of a university building at WUR, it looks like a mix of a greenhouse with offices that have balconies.
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Sophien Kamoun @kamounlab.bsky.social · 12/02/2025
Please spread the word. We're looking at recruiting a structural biologist (any level) @KamounLab to study plant-pathogen protein complexes especially in the context of coevolution. Direct inquiries welcome. Please include a cover letter. medium.com/@kamounlab/2...
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Anne Kupczok @annecmg.bsky.social · 11/02/2025
Join our symposium The evolution of microbial pangenomes at @eseb2025.bsky.social with @bjesseshapiro.bsky.social @annadewar.bsky.social (co-organized with @fbaumdicker.bsky.social and Jaime Iranzo)
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 08/01/2025
[Please repost] Re-upping this in the new year. Please let us know if you want to contribute to the 1001 Genomes Plus Project, which revolves around a curated collection of almost 600 long-read assemblies of #Arabidopsis thaliana. #plantscience
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Chrats Melkonian @cmelkonian.bsky.social · 06/01/2025
📢 Abstract Submission Extended Until January 12th. Don't miss your chance to present at the upcoming Symposium on Bioinformatics in Food Science! ☯️ We encourage abstracts from female speakers. Submit here: forms.gle/nA6b5zx9qv5K... ~80 in-person attendees registered, few spots still available!
forms.gle
Symposium: Bioinformatics in Food Science
Join us to explore how bioinformatics and data science, including AI technologies, are transforming the science behind our food, from microbes in food fermentation and sustainable agriculture to advan...
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Reposted by Harm Nijveen
Mariana Silva Artur @marianasartur.bsky.social · 30/12/2024
📢JOB ALERT! An interesting position is open in our department for a project coordinator! Please share! #plantscijobs #plantscifyi @pph-wur.bsky.social www.wur.nl/en/vacancy/p...
wur.nl
Project Coordinator Plant Physiology
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Daniel Probst @skepteis.bsky.social · 16/12/2024
If you're looking for a (fully funded) PhD position in #ml / #ai methodology (with plenty of opportunities to apply it) at the intersection of #chemistry and #biology, don't forget to apply before the end of the year. www.wur.nl/en/vacancy/p...
wur.nl
PhD student - Machine learning in bio- and cheminformatics
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Marnix Medema @marnixmedema.bsky.social · 05/12/2024
Come join us!!
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Christa Testerink @christatesterink.bsky.social · 03/12/2024
www.wur.nl/nl/vacature/... My colleagues Rumyana Karlova and Leónie Bentsink are hiring! @pph-wur.bsky.social @w-u-r.bsky.social
wur.nl
PhD student MiSeed
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Miguel Correa @m-correa-m.bsky.social · 02/12/2024
Dear hivemind, in the absence of a fresh CAFA publication: what predictor(s) do people consider to be the state-of-the-art in protein function prediction nowadays? #bioinformatics #bioml #protein
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Daniel Probst @skepteis.bsky.social · 02/12/2024
Here's a first: I'm hiring a PhD student. If you have (or know someone who has) a strong background and interest in computational (bio)chemistry or computer science (especially 3D computer vision), let's work together 😊 www.wur.nl/nl/vacature/...
wur.nl
PhD student - Machine learning in bio- and cheminformatics
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Daniel Probst @skepteis.bsky.social · 29/11/2024
I started a WUR (Wageningen University and Research) starter pack. Will add people as I find them 😉 go.bsky.app/6mNyhCa
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Justin J.J. van der Hooft @jjjvanderhooft.bsky.social · 27/11/2024
#CompMetabolomics #Job #PostDoc www.linkedin.com/posts/jjjvan...
linkedin.com
Justin J.J. van der Hooft on LinkedIn: Postdoc: Algorithmic developments to automatically detect RiPP structural…
🚨 Just a few days left to apply!! 🚨 #CompMetabolomics #Job #PostDoc #naturalproducts #RIPPs #bioactive #peptides
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Margot Smit @likeyoda1.bsky.social · 13/10/2024
Job alert 📢 We are looking for a new Independent Junior Group Leader in plant molecular biology at the ZMBP in Tübingen! 🌱 Submit your application by December 8th as a single pdf Please share
The Center for Plant Molecular Biology (ZMBP) at the University of Tübingen invites applications for an Independent Junior Group Leader (m/f/d) position. We seek a new colleague who will establish a vibrant and competitive research program in any research area of experimental Plant Molecular Biology. We expect the successful candidate to contribute to the excellent scientific environment by her/his/their proven scientific record, interactions with the research groups of the ZMBP, and participation in existing and planned larger research consortia like CRCs and excellence cluster initiatives. The position is vacant as of March 1st, 2025 and initially limited to 6 years. The ZMBP provides lab space with full equipment, funding for staff, start-up money, an independent annual budget, shared equipment funds and mentoring. For more information see www.zmbp.uni-tuebingen.de. Informal inquiries to any research group are welcome. Applications including a CV, publication list and research program should be sent before December 8th, 2024 to: Prof. Dr. Thorsten Nürnberger vw@zmbp.uni-tuebingen.de
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Mariana Silva Artur @marianasartur.bsky.social · 20/11/2024
Fresh PRE-PRINT!🚨🧐 We present SeedMatExplorer: an extensive transcriptome atlas underlying the acquisition of multiple seed quality traits during Arabidopsis seed maturation.🌱 #seedresearch #seedtechnology #seedscience #seedmaturation #breeding #plantresearch www.biorxiv.org/content/10.1...
biorxiv.org
SeedMatExplorer: The transcriptome atlas of Arabidopsis seed maturation
Seed maturation is a critical developmental phase during which seeds acquire essential traits for nutritional value and desiccation survival. Abscisic acid (ABA) signalling has long been recognized as...
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