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Gabe Gomes

@gabegomes.bsky.social
3K followers 647 following 24 posts

Research Scientist, X, The Moonshot Factory (fka Google X) | autonomous science designer | Assistant Professor (on leave), Carnegie Mellon University | h(e/im), views my own

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Reposted by Gabe Gomes
Nature Computational Science @natcomputsci.nature.com · 20/08/2026
📢In the latest Comment for our five-year anniversary series, @gabegomes.bsky.social and colleagues argue that what grounds trust in autonomous science is not a view inside the model — it's provenance. www.nature.com/articles/s43... #chemsky
nature.com
Provenance grounds trust in autonomous science - Nature Computational Science
As large language models begin to plan and run experiments on their own, the reflex is to demand that they be interpretable before they are trusted. We argue that what grounds trust in autonomous scie...
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Reposted by Gabe Gomes
NSF Center for Computer Assisted Synthesis (C-CAS) @nsf-ccas.bsky.social · 29/10/2025
📰C-CAS in the News 📰 This article highlights the work of C-CAS PIs @olexandr.bsky.social and @gabegomes.bsky.social as well as trainees Robert MacKnight, Nick Gao, and Liliana Gallegos. www.cmu.edu/mcs/news-eve... #chemistry #computerscience #nsf #chemsky
cmu.edu
NSF Center for Computer Assisted Synthesis Creates Opportunities for Discovery
Carnegie Mellon chemistry professors, Olexandr Isayev and Gabriel Gomes, are making breakthroughs as part of the NSF Center for Computer Assisted Synthesis.
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Reposted by Gabe Gomes
NSF Center for Computer Assisted Synthesis (C-CAS) @nsf-ccas.bsky.social · 14/10/2025
Meet Jose Regio, a PhD student in the lab of @gabegomes.bsky.social at @cmuchemistry.bsky.social. Have a question for Jose? Let us know in the replies. #nsf #chemistry #ccas #meetascientist #computerscience #science #phd #stem #chemsky 1m
Photo of Jose smiling and holding two thumbs up. Text reads "Meet Jose Regio, PhD student at Carnegie Mellon University." CMU and C-CAS logos are also displayed. Photo of Jose presenting a research poster. Text reads "Jose’s research focuses on designing visual interfaces for researchers in chemistry. His aim is to improve the usability of scientific tools and to make data easier to explore. By removing the barrier of extensive programming experience, this work gives experimental chemists access to computational tools and insights from big datasets."Photo of Jose in front of a M. Pimatubo Crater Lake. Text reads "Jose was born in the Philippines and grew up in Connecticut. Outside of the lab, Jose is a volunteer at the Latino Community Center in Pittsburgh where he helps with math lessons and fostering teamwork for elementary schoolers. In his free time he likes to learn Tagalog, Spanish, and Mandarin."
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Reposted by Gabe Gomes
CMU Mellon College of Science @cmuscience.bsky.social · 07/10/2025
CMU researchers are pushing the boundaries of AI in science. Gabe Gomes and his team developed Coscientist, an AI system that plans and executes chemical reactions — accelerating discoveries that once took years to complete. His work was featured in Nature. www.nature.com/articles/d41...
nature.com
Will AI ever win its own Nobel? Some predict a prize-worthy science discovery soon
Other researchers question whether autonomous AI scientists are possible or even desirable.
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Gabe Gomes @gabegomes.bsky.social · 03/10/2025
honestly, excellent summary!
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Reposted by Gabe Gomes
Narayan Lab @ UMich @narayanlab.bsky.social · 01/10/2025
CATNIP for the win! Read our newest work with the Gomes group- doi.org/10.1038/s415... @gabegomes.bsky.social @alisonnarayan.bsky.social @aepaton.bsky.social
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Reposted by Gabe Gomes
Nature Computational Science @natcomputsci.nature.com · 24/09/2025
A Perspective from @gabegomes.bsky.social and colleagues covers the opportunities for LLMs to advance chemical research and the challenges that must be overcome to effectively use LLMs as scientific partners. #chemsky ➡️ nature.com/articles/s43... 🔓 rdcu.be/etcqs 🧵(8/13)
nature.com
Rethinking chemical research in the age of large language models - Nature Computational Science
This Perspective highlights the potential integrations of large language models (LLMs) in chemical research and provides guidance on the effective use of LLMs as research partners, noting the ethical and performance-based challenges that must be addressed moving forward.
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Gabe Gomes @gabegomes.bsky.social · 18/09/2025
not a gotcha/rhetorical question: where/what sector do you think the most interesting science is being done today, broadly speaking? i’m trying to understand something.
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Gabe Gomes @gabegomes.bsky.social · 06/09/2025
preprint: arxiv.org/abs/2509.00103 [5/5]
arxiv.org
Pre-trained knowledge elevates large language models beyond traditional chemical reaction optimizers
Modern optimization in experimental chemistry employs algorithmic search through black-box parameter spaces. Here we demonstrate that pre-trained knowledge in large language models (LLMs) fundamentall...
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Gabe Gomes @gabegomes.bsky.social · 06/09/2025
access Iron Mind at gomes.andrew.cmu.edu/iron-mind/. excellent work led CMU Ph.D. students Robert MacKnight (ChemE) with Jose Regio (Chemistry), in collaboration with our colleagues Jeffrey Ethier and Luke Baldwin from AFRL. [4/5]
gomes.andrew.cmu.edu
Home - Iron Mind | Iron Mind
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Gabe Gomes @gabegomes.bsky.social · 06/09/2025
Iron Mind was developed to facilitate community engagement and set new benchmarks for optimization strategies and foundation models. it enables direct comparison of human, algorithmic, and LLM optimization campaigns on public leaderboards. [3/5]
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Gabe Gomes @gabegomes.bsky.social · 06/09/2025
our new preprint "Pre-trained knowledge elevates large language models beyond traditional chemical reaction optimizers" demonstrates that LLMs consistently match or exceed state-of-the-art BO across diverse chemical reaction datasets. [2/5]
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Gabe Gomes @gabegomes.bsky.social · 06/09/2025
new preprint, tl;dr: • LLMs match or exceed SOTA strategies on chemical reaction optimizations. • we built the Iron Mind platform and we hope that it can serve as a new benchmark for both reaction optimizers and foundation models. a thread [1/5]
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Reposted by Gabe Gomes
CMU Mellon College of Science @cmuscience.bsky.social · 22/07/2025
Gabe Gomes is rethinking how AI supports chemistry, taking the technology from providing passive answers to being an active lab partner that can help plan, test and accelerate discovery. www.cmu.edu/mcs/news-eve...
cmu.edu
Team Provides a Roadmap for Large Language Models in Chemical Research - Mellon College of Science - Carnegie Mellon University
In Nature Computational Science, Gomes and his coauthors offer a roadmap toward more strategic implementations of LLMs.
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Reposted by Gabe Gomes
Nature Computational Science @natcomputsci.nature.com · 24/06/2025
A Perspective from @gabegomes.bsky.social and colleagues covers the opportunities for LLMs to advance chemical research and the challenges that must be overcome to effectively use LLMs as scientific partners. www.nature.com/articles/s43... 🔓https://rdcu.be/etcqs
nature.com
Rethinking chemical research in the age of large language models - Nature Computational Science
This Perspective highlights the potential integrations of large language models (LLMs) in chemical research and provides guidance on the effective use of LLMs as research partners, noting the ethical ...
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Gabe Gomes @gabegomes.bsky.social · 19/06/2025
i made chatGPT (o3-pro + deep research) work for 63m on a task. i’ve never had it take any longer than 30 min on anything before this one. nice.
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Reposted by Gabe Gomes
Chemistry @ Carnegie Mellon University @cmuchemistry.bsky.social · 17/06/2025
In Nature Machine Intelligence, Faculty member Gabe Gomes @gabegomes.bsky.social , PhD student Daniil Boiko, and their collaborators propose a new type of molecular ML representation that includes quantum-chemical interaction www.cmu.edu/mcs/news-eve...
cmu.edu
Enhancing Molecular Machine Learning with Quantum-Chemical Insight - Mellon College of Science - Carnegie Mellon University
In Nature Machine Intelligence, Gabe Gomes, Daniil Boiko and collaborators propose a new type of molecular ML representation.
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Reposted by Gabe Gomes
Olexandr Isayev 🇺🇦 🇺🇸 @olexandr.bsky.social · 18/04/2025
It was a great pleasure to host @groupquintana.bsky.social for @cmuscience.bsky.social seminar! RamO(N) was talking about linear sling methods in molecular similarity and fast clustering! #chemsky #compchem Selfie with @gabegomes.bsky.social
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Gabe Gomes @gabegomes.bsky.social · 31/03/2025
and the short film they made is also a beautiful piece of art on its own: youtu.be/4cjJ-b-W_7A?...
youtu.be
Deafheaven - Winona (Short Film)
YouTube video by Deafheaven
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Gabe Gomes @gabegomes.bsky.social · 31/03/2025
stuff is all weird, but at least Deafheaven delivered a masterpiece with their latest album “Lonely People With Power”. definitely not everyone’s cup of tea (tw: heavy metal, harsh vocals), but it’s beautiful: youtu.be/XN7o7l5eehk?...
youtu.be
Deafheaven - Incidental II (feat. Jae Matthews) (Official Audio)
YouTube video by Deafheaven
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Reposted by Gabe Gomes
Allie Paton @aepaton.bsky.social · 28/03/2025
Excited to share this article from @cenmag.bsky.social! Such a nice highlight of the work we've been doing between @narayanlab.bsky.social and @gabegomes.bsky.social cen.acs.org/acs-news/acs...
cen.acs.org
Chemists create matchmaking app for biocatalysis
Machine learning model Catnip helps chemists find biocatalysts to try in synthesis
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Reposted by Gabe Gomes
Bri Barbu @bribarbu.bsky.social · 28/03/2025
@narayanlab.bsky.social and @gabegomes.bsky.social designed Catnip--so named because it's "for the biocats"--to make it easier for newbs to use enzymatic reactions in organic synthesis. I had the privilege of hearing them talk about it at #ACSSpring2025 earlier this week! cen.acs.org/acs-news/acs...
cen.acs.org
Chemists create matchmaking app for biocatalysis
Machine learning model Catnip helps chemists find biocatalysts to try in synthesis
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Reposted by Gabe Gomes
U-M Life Sciences Institute @umlifesciences.bsky.social · 28/03/2025
A team led by the @narayanlab.bsky.social and @gabegomes.bsky.social has developed an app to determine which biocatalysts are likely to work for a given molecule, making it easier for chemists to incorporate biocatalysts into organic synthesis. @alisonnarayan.bsky.social cen.acs.org/acs-news/acs...
cen.acs.org
Chemists create matchmaking app for biocatalysis
Machine learning model Catnip helps chemists find biocatalysts to try in synthesis
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Reposted by Gabe Gomes
NSF Center for Computer Assisted Synthesis (C-CAS) @nsf-ccas.bsky.social · 25/03/2025
Don't miss @gabegomes.bsky.social at ACS today at 4:30 PM PT! More info about his talk here: acs.digitellinc.com/live/34/sess... #chemsky #NSF #CCAS #chemistry #ACS
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Reposted by Gabe Gomes
The Gomes Group at Carnegie Mellon University @gpggrp.bsky.social · 25/03/2025
day 2 at the ACS Spring 2025: Daniil talks CATNIP (3:20 PM, Hall F Room 1). Robert (COMP Poster Session, 7 PM) will cover 'the Iron Mind project' and @gabegomes.bsky.social (4:30 PM, Room 25A) will give a glimpse of our efforts towards autonomous catalyst optimization with LLMs.
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Reposted by Gabe Gomes
Alán Aspuru-Guzik @aspuru.bsky.social · 25/03/2025
Check out our work on corrected product formulas (CPF) to lower the cost of #hamiltonian #simulation #quantumalgorithms @uoftcompsci.bsky.social @cqiqc-uoft.bsky.social @vectorinstitute.ai @chemuoft.bsky.social
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Gabe Gomes @gabegomes.bsky.social · 24/03/2025
the @gpggrp.bsky.social is at the ACS Spring 2025! come check out the works of Daniil Boiko and Rob MacKnight at the "ML + AI in Organic Chemistry" Symposium (Hall B-1, Room 4) today! extreme scaling of experimental chemical reactions via MS and an OS for autonomous comp chem!
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Gabe Gomes @gabegomes.bsky.social · 23/03/2025
hello San Diego!
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Reposted by Gabe Gomes
Ben Blaiszik @benblaiszik.bsky.social · 18/03/2025
People are rushing to apply AI to discover materials for applications in health, energy, aerospace and more. Are we the cool kids now? - Lila => $200M - OpenAI VP => AI+materials company - Cusp => $30M - RadicalAI automating materials discovery - FutureHouse scientific agents
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Reposted by Gabe Gomes
Olexandr Isayev 🇺🇦 🇺🇸 @olexandr.bsky.social · 18/03/2025
Despite being trained primarily on monophosphine ligands in Pd(0)/Pd(II) cycles, it demonstrates good transferability to diverse palladium complexes, including bidentate phosphines and dinuclear Pd(I) complexes. The speed of AIMNet2-Pd makes computational high-throughput catalyst screening feasible
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Reposted by Gabe Gomes
Olexandr Isayev 🇺🇦 🇺🇸 @olexandr.bsky.social · 18/03/2025
The model can characterize entire catalytic cycles including geometry optimization, transition state searches, and energy calculations for each step of a catalytic process (oxidative addition, transmetalation, and reductive elimination etc).
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Reposted by Gabe Gomes
Olexandr Isayev 🇺🇦 🇺🇸 @olexandr.bsky.social · 18/03/2025
AIMNet2-Pd enables rapid computational studies of Pd-catalyzed cross-coupling reactions by replacing computationally expensive QM calculations with a neural network while maintaining high accuracy (within 1-2 kcal mol⁻¹ and ~0.1 Å compared to reference quantum mechanics calculations).
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Gabe Gomes @gabegomes.bsky.social · 18/03/2025
such a joy to collaborate with so many amazing colleagues under @nsf-ccas.bsky.social! ultrafast and accurate NNPs with Pd to tackle some of the most relevant transformations in all of the chemical enterprise! @cmuscience.bsky.social @cmuengineering.bsky.social @gpggrp.bsky.social
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Reposted by Gabe Gomes
Andrew White 🐦‍⬛ @andrew.diffuse.one · 19/02/2025
Image duplication has been a powerful signal for detecting scientific fraud, but is irrelevant in many fields. I've been working a bit on finding new signals like it that work across fields. I've found one using LLMs that can predict retractions, weakly, for $1 per paper. 1/4
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Reposted by Gabe Gomes
Felippe Colombari @colombarifm.bsky.social · 12/02/2025
From biodiversity research to industrial application: our new work unlocks the potential of Brazilian natural resources, providing opportunities to convert agro-industrial residues into valuable bioproducts. #chembio #cnpem
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Reposted by Gabe Gomes
Alán Aspuru-Guzik @aspuru.bsky.social · 07/02/2025
Happy to appear in #BNNBloomberg TV talking about our recent research paper in @naturebiotech.bsky.social about #ai and #quantum for KRAS binder discovery. With @akshatai.bsky.social @elonverse.bsky.social Igor Staglar @cgorgulla.bsky.social @ghazivakili.bsky.social and others #chemsky
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Gabe Gomes @gabegomes.bsky.social · 07/02/2025
not really and it kinda makes sense that it isn’t: these are developed to be general purpose tools. if we want it to behave more like what a scientist would do in producing a review of the literature, you can push it on that direction. i think this is a plus, the control is in the hands of the user.
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
lil thread replying to @dereklowe.bsky.social's latest post on OpenAI's Deep research.
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
PPS: for comparison's sake, here's the result from Gemini 1.5 Pro with Deep Research for the same prompt: docs.google.com/document/d/1... [7/7]
docs.google.com
Thalidomide Toxicity Research Report
Thalidomide: A Chiral Molecule with a Complex Toxicity Profile Thalidomide, a glutamic acid derivative, has a long and controversial history. Initially marketed as a sedative and antiemetic in the 195...
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
PS: before anyone jumps on me here, i did NOT do an in-depth review of the report that Deep research generated. i see some issues with general language and share my concerns with @dereklowe.bsky.social on how it talks about "stability." [6/7]
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
my point is the following: the tools are going to make mistakes, but these are tools, not oracles. knowing how to use them and their limitations is as important as know their capabilities. we are all learning and adapting, but things are moving very fast. [5/7]
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
then i used o1-pro to augment the prompt specifically for Deep research. you see it here: chatgpt.com/share/67a4fa... [4/7]
chatgpt.com
ChatGPT - Thalidomide Toxicity Mechanisms Research
Shared via ChatGPT
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
"Your report MUST include references that back up your claims. Make sure to ground your research on the most recent outcomes going backwards as you will find that a lot of newer papers and results elucidating these effects have been published." [3/7]
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
you can see that this time it focused on more recent literature. you will notice that my prompt is vastly different from yours. i took your prompt and added the following two sentences: [2/7]
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Gabe Gomes @gabegomes.bsky.social · 06/02/2025
Derek: huge fan of yours here and i am always in favor of calling out issues with all new technologies arising. for this one, i think you missed the mark a bit. here's my own Deep research chat on the topic that you showed in your post: chatgpt.com/share/67a4f9... [1/7]
chatgpt.com
ChatGPT - Thalidomide Toxicity Research Request
Shared via ChatGPT
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Gabe Gomes @gabegomes.bsky.social · 05/02/2025
Deep Research from OpenAI is really that good. i was thoroughly impressed by o3-mini (even more so than o1 pro mode), but Deep Research is something else. getting really exciting ideas for new reactions and catalysts. no need for hype.
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Chemistry @ Carnegie Mellon University @cmuchemistry.bsky.social · 29/01/2025
Chemistry Seminar Kaitlin McCardle Nature Computational Science Nature Computational Science: A dedicated home for computational science Host: Gabriel Gomes @gabegomes.bsky.social Friday, January 31st, 2025 12:30 p.m. Mellon Institute Conference Room 348
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Alán Aspuru-Guzik @aspuru.bsky.social · 21/01/2025
Excited to have #selfdrivinglaboratories listed as one of the seven technologies to watch in 2025 by @nature.com Thanks to the #matterlab, the @accelerationc.bsky.social and of course all the global community on SDLs! @uoft.bsky.social @vectorinst.bsky.social l www.nature.com/articles/d41...
nature.com
Self-driving laboratories, advanced immunotherapies and five more technologies to watch in 2025
Sustainability and artificial intelligence dominate our seventh annual round-up of exciting innovations.
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Evan Spotte-Smith (they/them) @ewcss.info · 26/12/2024
Preprint! "Inverse Design of Complex Nanoparticle Heterostructures via Deep Learning on Heterogeneous Graphs" is now on ChemRxiv. In this work, we consider the problem of applying deep learning to heterogeneous nanostructures. (1/10) #ChemSky 🧪 #CompChem #physics #optics #nanoscience
doi.org
Inverse Design of Complex Nanoparticle Heterostructures via Deep Learning on Heterogeneous Graphs
Applications of deep learning (DL) to design nanomaterials are hampered by a lack of suitable data representations and training data. We report efforts to overcome these limitations and leverage DL to...
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Evan Spotte-Smith (they/them) @ewcss.info · 08/01/2025
@samblau.bsky.social, Brett Savoie (Notre Dame), and I are organizing a symposium for @amerchemsociety.bsky.social Fall 2025 called "Chemical Reaction Networks, Retrosynthesis, and Reaction Prediction" under @acscomp.bsky.social. #reactionnetwork #CRN #retrosynthesis 🧪 ⚗️ #CompChem
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