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Ferran Muiños

@fmuinos.bsky.social
150 followers 483 following 9 posts

Scientist working on computational genomics, looking into mutational heterogeneity and somatic evolution. Maths, Stats, ML, Bioinfo. BBGLab, IRB Barcelona.

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Ferran Muiños @fmuinos.bsky.social · 27/09/2026
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Mònica Sánchez-Guixé @guixe-m.bsky.social · 06/07/2026
1/17 We are very happy to announce our latest work about the genetic origin and evolution of one of the most aggressive pediatric tumors: “Variable latency between the founder genetic event and rhabdoid tumor expansion” www.biorxiv.org/content/10.6.... Follow the thread to know more 👇
biorxiv.org
Variable latency between the founder genetic event and rhabdoid tumor expansion
Rhabdoid tumors are very aggressive rare pediatric cancers with poor survival affecting very young children. They are characterized by the bi-allelic loss of SMARCB1 or SMARCA4, which is suspected to ...
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Elizabeth Spiers @espiers.bsky.social · 27/04/2026
This is exactly the kind of anti-intellectualism I wrote about here: www.elizabethspiers.com/the-anti-int...
elizabethspiers.com
The Anti-Intellectualism of Silicon Valley Elites
I recently re-read Richard Hofstadter's Anti-Intellectualism in American Life, and now every time a reactionary Silicon Valley billionaire opens his mouth, I think about it. So I wrote about it for Th...
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Nuria Lopez-Bigas @nlbigas.bsky.social · 15/04/2026
Tumor promotion through the lens of evolution This review grew out of many long conversations, shared ideas, and lively discussions It has been a real pleasure to think together with Allan, Paul, Eve, and Abel about how tumours develop and how carcinogens shape cancer risk rdcu.be/fdC2J
rdcu.be
Tumour promotion through the lens of evolution
Nature - This Review revisits tumour initiation and promotion in light of clonal diversity and the presence of cancer driver mutations in normal tissues, aiming to understand mechanisms that enable...
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Ferran Muiños @fmuinos.bsky.social · 21/10/2025
Shell-shocked by the passing of Danya. Incredibly talented person, brilliant chess player and educator. He epitomized the love for the game of chess.
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Nuria Lopez-Bigas @nlbigas.bsky.social · 08/10/2025
🚨 New paper alert! Sex and smoking bias in the selection of somatic mutations in human bladder www.nature.com/articles/s41... by @raquelbmi.bsky.social, @ferriol.bsky.social et al (in collaboration with Rosana Risques lab in @uwmedicine.bsky.social)
nature.com
Sex and smoking bias in the selection of somatic mutations in human bladder - Nature
Sex bias and association with smoking history identified in the landscape of driver mutations and clonal expansions in normal human bladder tissue may explain the higher bladder cancer risk in men and smokers.
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IRB Barcelona @irbbarcelona.org · 08/10/2025
🧪 Out in @nature.com: Smoking and biological sex shape healthy bladder tissue evolution, offering clues to #cancer risk. ✍️ #IRBBarcelona & University of Washington ➡️ bit.ly/42wcIN5 📌 DOI: 10.1038/s41586-025-09521-x #IRBScience #CancerResearch #BladderCancer @bbglab.bsky.social 🧵👇
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Ferran Muiños @fmuinos.bsky.social · 16/09/2025
Stop the genocide! www.ohchr.org/en/press-rel...
ohchr.org
Israel has committed genocide in the Gaza Strip, UN Commission finds
GENEVA – Israel has committed genocide against Palestinians in the Gaza Strip, the UN Independent International Commission of Inquiry on the Occupied Palestinian Territory, including East Jerusalem, a...
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Nuria Lopez-Bigas @nlbigas.bsky.social · 14/08/2025
New paper from our lab - ‪@bbglab.bsky.social‬. Oncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selection academic.oup.com/nar/article/... Kudos to Stefano, Olivia, @fmuinos.bsky.social and Abel
academic.oup.com
Oncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selection
Abstract. Identifying the genes capable of driving tumorigenesis in different tissues is one of the central goals of cancer genomics. Computational methods
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A.R. Moxon @juliusgoat.bsky.social · 02/08/2025
I wrote about the debate with the Jubilee fascists, the overall idea of the utility of debate and the alleged need for it in order to arrive at truth, and the malicious and corrosive effect this false idea actually has upon the discourse and society. www.the-reframe.com/boiling-water/
the-reframe.com
Boiling Water
The corrosive damage cause by forcing people to defend their own lives by debating ideas that have already been defeated.
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 26/07/2025
To better treat cancer, we need to understand its underlying biology. Despite decades of research, some fundamental questions remain unanswered. One is why certain key tumor suppressor or oncogenes lead to cancer predominantly in single tissue: e.g. Rb in the retina, or APC in the colon 1/n 🧪
Diagram illustrating the two-hit model of retinoblastoma
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A.R. Moxon @juliusgoat.bsky.social · 04/07/2025
On my country's 249th birthday, I wrote about the problem of sharing a nation with millions of evil people, and how to live a human life in the face of overwhelming inhumanity. Oh and the Beastie Boys make an appearance. www.the-reframe.com/so-shines-a-...
the-reframe.com
So Shines A Good Deed In A Weary World
Dark isn't the opposite of light, it's the absence of light.
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Barcelona Biomedical Genomics Lab @bbglab.bsky.social · 18/06/2025
Our colleagues Olivia Dove, Raquel Blanco and Ferriol Calvet are attending the #EACR2025. They are sharing their research results with their respective posters and are for sure learning a lot in an excellent Congress with an outstanding list of speakers. @ferriol.bsky.social @raquelbmi.bsky.social
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Philip Ball @philipcball.bsky.social · 17/06/2025
Oh goodness, @dereklowe.bsky.social's response to Hassabis is so on the mark and full of quotable things. 1/n www.science.org/content/blog...
science.org
The End of Disease
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Ruben C. Arslan @ruben.the100.ci · 16/06/2025
I read this cool piece by @owlposting1.bsky.social on endometriosis on @scientificdiscovery.dev's recommendation www.owlposting.com/p/endometrio... One point is that endometriosis is very common, 10% of women according to the WHO. Which makes the paltry research (funding) even more galling.
owlposting.com
Endometriosis is an incredibly interesting disease
5k words, 23 minutes reading time
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Richard Sever @richardsever.bsky.social · 04/06/2025
"a fascinating case study on the limits of AI in biology and the harms of current publishing incentives" rachel.fast.ai/posts/2025-0...
rachel.fast.ai
Rachel Thomas, PhD - Deep learning gets the glory, deep fact checking gets ignored
an AI researcher going back to school for immunology
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kjaganatha.bsky.social @kjaganatha.bsky.social · 29/05/2025
We're thrilled to introduce PromoterAI — a tool for accurately identifying promoter variants that impact gene expression. 🧵 (1/)
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Ferran Muiños @fmuinos.bsky.social · 23/05/2025
I came across this really compressed, yet understandable explanation of Gödel's incompleteness blog.plover.com/math/Gdl-Smu...
blog.plover.com
World's shortest explanation of Gödel's theorem
From the highly eclectic blog of Mark Dominus
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Ferran Muiños @fmuinos.bsky.social · 22/05/2025
Heading to day 2 #VariantEffect25 Come by poster 129 to know more about our recent @bbglab.bsky.social joint study with Risques lab at UW Medicine: somatic variation (and selection!) in the normal bladder urothelium.
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Eric Topol @erictopol.bsky.social · 23/04/2025
New evidence @nejm.org today that age-related clonal hematopoiesis (CHIP) has a driver role in evolution of solid cancers www.nejm.org/doi/full/10.... www.nejm.org/doi/full/10....
nejm.org
Clonal Hematopoiesis as a Driver of Solid Tumors | NEJM
Clonal hematopoiesis is the expansion of a genetically related population of hematopoietic stem and progenitor cells that disproportionately contribute to blood-cell production.1 Clonal hematopoies...
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Ferran Muiños @fmuinos.bsky.social · 17/04/2025
Just learned that pandas and numpy do not provide the same default calculation of the variance: pandas gives the unbiased sample variance estimator whilst numpy gives the MLE estimator 😱 To get the pandas behaviour with numpy, use the kwarg ddof=1 👌
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Laura Torrens @lauratorrens.bsky.social · 31/03/2025
Hello world! Kicking off my first post with some exciting news 📣 Our study on tobacco smoke-induced mutagenesis in head & neck cancer (HNC) is out today in @naturegenet.bsky.social! rdcu.be/efNiH 🧬🔥 We uncover the multiple ways tobacco and alcohol drive HNC development. A short thread 🧵⬇️
rdcu.be
The complexity of tobacco smoke-induced mutagenesis in head and neck cancer
Nature Genetics - Whole-genome sequencing and mutational signature analysis of 265 head and neck cancer samples collected from eight different countries provide insight into the vital contribution...
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Jason Hickel @jasonhickel.bsky.social · 30/03/2025
During apartheid, South African armed forces killed 69 civilians in the Sharpeville Massacre. The world was shocked. This event is still taught in history classes. On average, Israel has massacred more than 70 Palestinian civilians *every day* for the past 18 months.
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Carl T. Bergstrom @carlbergstrom.com · 06/03/2025
Let's talk about this Nature piece in more detail. I've rarely read something so anti-scientific anywhere short of the National Review. www.nature.com/articles/d41...
nature.com
Three AI-powered steps to faster, smarter peer review
Tired of spending countless hours on peer reviews? An AI-assisted workflow could help.
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Carl T. Bergstrom @carlbergstrom.com · 04/02/2025
Modern-Day Oracles or Bullshit Machines? Jevin West (@jevinwest.bsky.social) and I have spent the last eight months developing the course on large language models (LLMs) that we think every college freshman needs to take. thebullshitmachines.com
thebullshitmachines.com
INTRODUCTION
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 07/02/2025
“‘Science can and should as a community organise itself to maximise its ability to act collectively, ethically and – when necessary – politically.’ The scientific community needs to speak up – not just for the sake of science, but of human decency, dignity and morality.”
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The War on Cars @thewaroncars.bsky.social · 05/02/2025
"The most abundant nanoplastic was tyre particles (41%), then polystyrene (28%) and polyethylene (12%). Each tyre on the world’s 1.6bn vehicles can lose 4kg during its lifetimes and may be the largest source of tiny plastic pollution."
theguardian.com
Vehicle tyres found to be biggest source of nanoplastics in the high Alps
Mountaineers now scaling more peaks for first global study of nanoplastics, which can enter lungs and bloodstream
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David Martínez Millán @dmartmillan.bsky.social · 12/12/2024
🎉 I'm thrilled to announce that OpenVariant is finally published! A comprehensive toolkit to facilitate reading, parsing and refinement of diverse input file formats in a customizable structure, all within a single process. @bbglab.bsky.social at @irbbarcelona.bsky.social doi.org/10.1093/bioi...
academic.oup.com
OpenVariant: a toolkit to parse and operate multiple input file formats
AbstractSummary. Advances in high-throughput DNA sequencing technologies and decreasing costs have fueled the identification of small genetic variants (suc
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