Reposted by Ferran MuiñosMònica Sánchez-Guixé @guixe-m.bsky.social · 06/07/20261/17 We are very happy to announce our latest work about the genetic origin and evolution of one of the most aggressive pediatric tumors: “Variable latency between the founder genetic event and rhabdoid tumor expansion” www.biorxiv.org/content/10.6.... Follow the thread to know more 👇biorxiv.orgVariable latency between the founder genetic event and rhabdoid tumor expansionRhabdoid tumors are very aggressive rare pediatric cancers with poor survival affecting very young children. They are characterized by the bi-allelic loss of SMARCB1 or SMARCA4, which is suspected to ... 196
Reposted by Ferran MuiñosElizabeth Spiers @espiers.bsky.social · 27/04/2026This is exactly the kind of anti-intellectualism I wrote about here: www.elizabethspiers.com/the-anti-int...elizabethspiers.comThe Anti-Intellectualism of Silicon Valley ElitesI recently re-read Richard Hofstadter's Anti-Intellectualism in American Life, and now every time a reactionary Silicon Valley billionaire opens his mouth, I think about it. So I wrote about it for Th... 1228575
Reposted by Ferran MuiñosNuria Lopez-Bigas @nlbigas.bsky.social · 15/04/2026Tumor promotion through the lens of evolution This review grew out of many long conversations, shared ideas, and lively discussions It has been a real pleasure to think together with Allan, Paul, Eve, and Abel about how tumours develop and how carcinogens shape cancer risk rdcu.be/fdC2Jrdcu.beTumour promotion through the lens of evolutionNature - This Review revisits tumour initiation and promotion in light of clonal diversity and the presence of cancer driver mutations in normal tissues, aiming to understand mechanisms that enable... 13314
Ferran Muiños @fmuinos.bsky.social · 21/10/2025Shell-shocked by the passing of Danya. Incredibly talented person, brilliant chess player and educator. He epitomized the love for the game of chess. 130
Reposted by Ferran MuiñosNuria Lopez-Bigas @nlbigas.bsky.social · 08/10/2025🚨 New paper alert! Sex and smoking bias in the selection of somatic mutations in human bladder www.nature.com/articles/s41... by @raquelbmi.bsky.social, @ferriol.bsky.social et al (in collaboration with Rosana Risques lab in @uwmedicine.bsky.social)nature.comSex and smoking bias in the selection of somatic mutations in human bladder - NatureSex bias and association with smoking history identified in the landscape of driver mutations and clonal expansions in normal human bladder tissue may explain the higher bladder cancer risk in men and smokers. 27029
Reposted by Ferran MuiñosIRB Barcelona @irbbarcelona.org · 08/10/2025🧪 Out in @nature.com: Smoking and biological sex shape healthy bladder tissue evolution, offering clues to #cancer risk. ✍️ #IRBBarcelona & University of Washington ➡️ bit.ly/42wcIN5 📌 DOI: 10.1038/s41586-025-09521-x #IRBScience #CancerResearch #BladderCancer @bbglab.bsky.social 🧵👇 21912
Ferran Muiños @fmuinos.bsky.social · 16/09/2025Stop the genocide! www.ohchr.org/en/press-rel...ohchr.orgIsrael has committed genocide in the Gaza Strip, UN Commission findsGENEVA – Israel has committed genocide against Palestinians in the Gaza Strip, the UN Independent International Commission of Inquiry on the Occupied Palestinian Territory, including East Jerusalem, a... 000
Reposted by Ferran MuiñosNuria Lopez-Bigas @nlbigas.bsky.social · 14/08/2025New paper from our lab - @bbglab.bsky.social. Oncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selection academic.oup.com/nar/article/... Kudos to Stefano, Olivia, @fmuinos.bsky.social and Abelacademic.oup.comOncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selectionAbstract. Identifying the genes capable of driving tumorigenesis in different tissues is one of the central goals of cancer genomics. Computational methods 02312
Reposted by Ferran MuiñosA.R. Moxon @juliusgoat.bsky.social · 02/08/2025I wrote about the debate with the Jubilee fascists, the overall idea of the utility of debate and the alleged need for it in order to arrive at truth, and the malicious and corrosive effect this false idea actually has upon the discourse and society. www.the-reframe.com/boiling-water/the-reframe.comBoiling WaterThe corrosive damage cause by forcing people to defend their own lives by debating ideas that have already been defeated. 35633197
Reposted by Ferran MuiñosMark Peifer (He, him) @peiferlabunc.bsky.social · 26/07/2025To better treat cancer, we need to understand its underlying biology. Despite decades of research, some fundamental questions remain unanswered. One is why certain key tumor suppressor or oncogenes lead to cancer predominantly in single tissue: e.g. Rb in the retina, or APC in the colon 1/n 🧪 49936
Reposted by Ferran MuiñosA.R. Moxon @juliusgoat.bsky.social · 04/07/2025On my country's 249th birthday, I wrote about the problem of sharing a nation with millions of evil people, and how to live a human life in the face of overwhelming inhumanity. Oh and the Beastie Boys make an appearance. www.the-reframe.com/so-shines-a-...the-reframe.comSo Shines A Good Deed In A Weary WorldDark isn't the opposite of light, it's the absence of light. 20503163
Reposted by Ferran MuiñosBarcelona Biomedical Genomics Lab @bbglab.bsky.social · 18/06/2025Our colleagues Olivia Dove, Raquel Blanco and Ferriol Calvet are attending the #EACR2025. They are sharing their research results with their respective posters and are for sure learning a lot in an excellent Congress with an outstanding list of speakers. @ferriol.bsky.social @raquelbmi.bsky.social 083
Reposted by Ferran MuiñosPhilip Ball @philipcball.bsky.social · 17/06/2025Oh goodness, @dereklowe.bsky.social's response to Hassabis is so on the mark and full of quotable things. 1/n www.science.org/content/blog...science.orgThe End of Disease 127124
Reposted by Ferran MuiñosRuben C. Arslan @ruben.the100.ci · 16/06/2025I read this cool piece by @owlposting1.bsky.social on endometriosis on @scientificdiscovery.dev's recommendation www.owlposting.com/p/endometrio... One point is that endometriosis is very common, 10% of women according to the WHO. Which makes the paltry research (funding) even more galling.owlposting.comEndometriosis is an incredibly interesting disease5k words, 23 minutes reading time 3265
Reposted by Ferran MuiñosRichard Sever @richardsever.bsky.social · 04/06/2025"a fascinating case study on the limits of AI in biology and the harms of current publishing incentives" rachel.fast.ai/posts/2025-0...rachel.fast.aiRachel Thomas, PhD - Deep learning gets the glory, deep fact checking gets ignoredan AI researcher going back to school for immunology 19345
Reposted by Ferran Muiñoskjaganatha.bsky.social @kjaganatha.bsky.social · 29/05/2025We're thrilled to introduce PromoterAI — a tool for accurately identifying promoter variants that impact gene expression. 🧵 (1/) 16028
Ferran Muiños @fmuinos.bsky.social · 23/05/2025I came across this really compressed, yet understandable explanation of Gödel's incompleteness blog.plover.com/math/Gdl-Smu...blog.plover.comWorld's shortest explanation of Gödel's theoremFrom the highly eclectic blog of Mark Dominus 030
Ferran Muiños @fmuinos.bsky.social · 22/05/2025Heading to day 2 #VariantEffect25 Come by poster 129 to know more about our recent @bbglab.bsky.social joint study with Risques lab at UW Medicine: somatic variation (and selection!) in the normal bladder urothelium. 151
Reposted by Ferran MuiñosEric Topol @erictopol.bsky.social · 23/04/2025New evidence @nejm.org today that age-related clonal hematopoiesis (CHIP) has a driver role in evolution of solid cancers www.nejm.org/doi/full/10.... www.nejm.org/doi/full/10....nejm.orgClonal Hematopoiesis as a Driver of Solid Tumors | NEJMClonal hematopoiesis is the expansion of a genetically related population of hematopoietic stem and progenitor cells that disproportionately contribute to blood-cell production.1 Clonal hematopoies... 314134
Ferran Muiños @fmuinos.bsky.social · 17/04/2025Just learned that pandas and numpy do not provide the same default calculation of the variance: pandas gives the unbiased sample variance estimator whilst numpy gives the MLE estimator 😱 To get the pandas behaviour with numpy, use the kwarg ddof=1 👌 000
Reposted by Ferran MuiñosLaura Torrens @lauratorrens.bsky.social · 31/03/2025Hello world! Kicking off my first post with some exciting news 📣 Our study on tobacco smoke-induced mutagenesis in head & neck cancer (HNC) is out today in @naturegenet.bsky.social! rdcu.be/efNiH 🧬🔥 We uncover the multiple ways tobacco and alcohol drive HNC development. A short thread 🧵⬇️rdcu.beThe complexity of tobacco smoke-induced mutagenesis in head and neck cancerNature Genetics - Whole-genome sequencing and mutational signature analysis of 265 head and neck cancer samples collected from eight different countries provide insight into the vital contribution... 1106
Reposted by Ferran MuiñosJason Hickel @jasonhickel.bsky.social · 30/03/2025During apartheid, South African armed forces killed 69 civilians in the Sharpeville Massacre. The world was shocked. This event is still taught in history classes. On average, Israel has massacred more than 70 Palestinian civilians *every day* for the past 18 months. 8964478
Reposted by Ferran MuiñosCarl T. Bergstrom @carlbergstrom.com · 06/03/2025Let's talk about this Nature piece in more detail. I've rarely read something so anti-scientific anywhere short of the National Review. www.nature.com/articles/d41...nature.comThree AI-powered steps to faster, smarter peer reviewTired of spending countless hours on peer reviews? An AI-assisted workflow could help. 621622688
Reposted by Ferran MuiñosCarl T. Bergstrom @carlbergstrom.com · 04/02/2025Modern-Day Oracles or Bullshit Machines? Jevin West (@jevinwest.bsky.social) and I have spent the last eight months developing the course on large language models (LLMs) that we think every college freshman needs to take. thebullshitmachines.comthebullshitmachines.comINTRODUCTION 17528061006
Reposted by Ferran MuiñosNeedhi Bhalla 💅🏽 @needhibhalla.bsky.social · 07/02/2025“‘Science can and should as a community organise itself to maximise its ability to act collectively, ethically and – when necessary – politically.’ The scientific community needs to speak up – not just for the sake of science, but of human decency, dignity and morality.” 03919
Reposted by Ferran MuiñosThe War on Cars @thewaroncars.bsky.social · 05/02/2025"The most abundant nanoplastic was tyre particles (41%), then polystyrene (28%) and polyethylene (12%). Each tyre on the world’s 1.6bn vehicles can lose 4kg during its lifetimes and may be the largest source of tiny plastic pollution."theguardian.comVehicle tyres found to be biggest source of nanoplastics in the high AlpsMountaineers now scaling more peaks for first global study of nanoplastics, which can enter lungs and bloodstream 7397153
Reposted by Ferran MuiñosDavid Martínez Millán @dmartmillan.bsky.social · 12/12/2024🎉 I'm thrilled to announce that OpenVariant is finally published! A comprehensive toolkit to facilitate reading, parsing and refinement of diverse input file formats in a customizable structure, all within a single process. @bbglab.bsky.social at @irbbarcelona.bsky.social doi.org/10.1093/bioi...academic.oup.comOpenVariant: a toolkit to parse and operate multiple input file formatsAbstractSummary. Advances in high-throughput DNA sequencing technologies and decreasing costs have fueled the identification of small genetic variants (suc 32211