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Fay Lin

@faylinphd.bsky.social
73 followers 37 following 29 posts

Senior Technology Editor @ GEN Writing about AI x Bio ✉️ flin@genengnews.com

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Reposted by Fay Lin
Basecamp Research @basecamp-research.bsky.social · 15/01/2026
What would it take for one AI system to design gene therapies, cell therapies, and antibiotics? @faylinphd.bsky.social explores how EDEN was built to test that idea — using trillions of tokens of evolutionary DNA to learn biology’s underlying rules. Read it here: www.genengnews.com/topics/artif...
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MIT Jameel Clinic @mitjameelclinic.bsky.social · 08/12/2025
Boltz-2 is one of GEN News's six biggest stories of 2025! 📰Congrats to the Boltz-2 team and thank you @faylinphd.bsky.social for the recognition! www.genengnews.com/industry-new... #AISky
genengnews.com
GEN Editors Reflect on Six of the Biggest Stories of the Year
For the scientific enterprise, 2025 was marked by setbacks and challenges. But scientists are no strangers to adversity—the ability to overcome obstacles is built into our training. In turn, research ...
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Fay Lin @faylinphd.bsky.social · 08/12/2025
Altos Labs has taken home the Generalist Prize for the most "well-rounded" model across metrics at @arcinstitute.org's Virtual Cell Challenge! The competition highlights the challenge of defining robust benchmarks for biology. #NeurIPS2025 Read at GEN: www.genengnews.com/topics/artif...
genengnews.com
NeurIPS 2025: Altos Labs Wins Generalist Prize at Arc's Virtual Cell Challenge
The inaugural competition surprisingly awarded two $100,000 grand prizes to address challenges in defining robust benchmarks for complex biology.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 02/11/2025
AI in Protein Design: Hype vs. Reality Explained by David Baker In this GEN interview, he emphasizes that designing new proteins from scratch is now a reality. Whether AI transforms medicine will require improving our understanding of biology's complexity
genengnews.com
AI in Protein Design: Hype vs. Reality Explained by David Baker
In this GEN interview, Nobel Laureate David Baker, PhD, emphasizes that designing proteins from scratch is reality and unpacks what's needed for AI to transform medicine.
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Kevin Davies @kevinadavies.bsky.social · 29/10/2025
Fantastic free virtual summit 11 am ET today: The State of AI in Drug Discovery Hosted by @faylinphd.bsky.social Speakers include @dereklowe.bsky.social @emmalundberg.bsky.social @bowang87.bsky.social @mollygibson.bsky.social Regina Barzilay … and more! webinars.liebertpub.com/e/The-State-...
webinars.liebertpub.com
The State of AI in Drug Discovery 2025, Wed, Oct 29th, 2025 @ 11:00 AM Mary Ann Liebert, Inc. publishers
Artificial intelligence (AI) and machine learning partnered with big data generation at unprecedented scale is transforming the worlds of biotechnology and pharma, particularly in the arena of drug discovery. From generative AI to unlock novel drug candidates to virtual cells that gleam insights across multimodal biology, we are witnessing the cusp of an exponential curve of AI innovation that is poised to enhance and perhaps overhaul the design and validation of novel therapeutics. In 2024, GEN debuted our virtual summit, The State of AI in Drug Discovery, which drew a record audience. This year’s summit provides a platform for an outstanding group of researchers, evangelists and entrepreneurs to showcase the latest advances, applications and challenges regarding the deployment of AI across therapeutic development. The program features many of the most exciting companies and organizations powering the AI revolution, including NVIDIA, Xaira Therapeutics, Recursion, Chan Zuckerberg Initiative, Arc Institute, Generate: Biomedicines, and more! Please join us on October 29th for a dynamic program featuring: A featured presentation with Bo Wang, PhD (Xaira Therapeutics) on the promise of multimodal AI for health care The democratization of small molecule drug discovery with the developers of Boltz-2, Gabriele Corso, PhD (MIT), Regina Barzilay, PhD (MIT), and Najat Khan, PhD (Recursion) Evolving industry trends across the AI therapeutic landscape with Derek Lowe, PhD (Novartis and author of "In the Pipeline"), Molly Gibson, PhD, (Flagship Pioneering), and Stacie Calad-Thomson, PhD (NVIDIA) Building the virtual cell with Theofanis Karaletsos (Chan Zuckerberg Initiative), Emma Lundberg, PhD (Stanford), Hani Goodarzi, PhD (Arc Institute), and Ron Alfa, MD, PhD (Noetik) What’s next for AI in protein design with Surge Biswas, PhD (Nabla Bio), Tharindi Hapuarachchi, PhD (Generate: Biomedicines), and Oliver Vince, PhD (Basecamp Research) Breakout sessions from our event sponsors, Revvity Signals, Benchling, and Telesis Bio. Registration for The State of AI in Drug Discovery is entirely free. Sponsored by
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Fay Lin @faylinphd.bsky.social · 24/09/2025
David Baker's Nobel Prize-winning lab has now designed a molecular on/off switch to control the speed of protein binding, supporting safer medicines that quell harmful side effects and activate drugs on cue, and sensitive biosensors for SARS-CoV-2 testing! www.genengnews.com/topics/artif...
genengnews.com
AI-Designed Protein Switches Control Drugs with Speed
David Baker’s Nobel Prize-winning lab has designed protein on/off switches as a tool for tunable cancer immunotherapies and biosensors.
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Fay Lin @faylinphd.bsky.social · 17/09/2025
Genome foundation models, Evo 1 and Evo 2, have now generated viable bacteriophage genomes, demonstrating experimental validation of whole genomes designed by AI! @arcinstitute.org @brianhie.bsky.social @samuelhking.bsky.social Read more at GEN: www.genengnews.com/topics/artif...
genengnews.com
AI Designs Viable Bacteriophage Genomes, Combats Antibiotic Resistance
AI-guided design of 16 functional bacteriophage genomes offers a path for phage-based therapies against antibiotic-resistant infections.
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Fay Lin @faylinphd.bsky.social · 27/08/2025
BindCraft is now published in @nature.com! The open-source pipeline for de novo protein binder design achieves significantly improved success rates with nanomolar affinity and therapeutic potential from gene editing to allergens. Read more at GEN: www.genengnews.com/topics/artif...
genengnews.com
BindCraft AI Model Achieves One-Shot Functional Protein Design
The open-source pipeline designs proteins with improved success rates for therapeutic targets, including gene editing proteins and allergens.
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Fay Lin @faylinphd.bsky.social · 30/07/2025
OpenCRISPR-1, Profluent's AI-designed gene editor, is now published in Nature! @thisismadani.bsky.social emphasizes the need to move away from random discovery and into bespoke design using AI. 1/ Read more at GEN: www.genengnews.com/topics/artif...
genengnews.com
Profluent’s AI-Designed Gene Editor Provides Glimpse Into Generalizable Platform
OpenCRISPR-1, an AI-generated custom gene editor capable of precision editing of the human genome. is just the beginning of Profluent’s AI applications.
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Reposted by Fay Lin
Elizabeth Wood, PhD @lizbwood.bsky.social · 22/07/2025
Great coverage of VISTA by the wonderful @faylinphd.bsky.social over at GEN: www.genengnews.com/topics/artif... Read about VISTA: www.jurabio.com/blog/vista
genengnews.com
Jura Bio’s AI Data Loop Enables Large-Scale De Novo Antibody Design
VISTA, an AI-controlled data loop system, guides large-scale antibody design from scratch for applications in cancer therapy.
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Fay Lin @faylinphd.bsky.social · 18/07/2025
David Baker's Nobel Prize-winning lab has now designed binders to "undruggable" disordered proteins, unlocking therapeutic access to over 50% of the human proteome! ‪@uwproteindesign.bsky.social‬ Read more at GEN: tinyurl.com/4fw6wvkm
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Undruggable No More: AI Hits Disordered Proteins, Unlocks Therapy Targets
David Baker’s lab has successfully designed binders to disordered proteins, expanding therapeutic access to over 50% of the human proteome.
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Avner Schlessinger @schlessingerlab.bsky.social · 08/07/2025
Excited to see our new AI Small Molecule Drug Discovery Center #MountSinai featured in GEN! 🧬🧠 Read more: genengnews.com/topics/artif... Thank you @faylinphd.bsky.social #AI #DrugDiscovery #Genetics
genengnews.com
Democratizing Artificial Intelligence in Pre-Clinical Drug Discovery
While AI-driven approaches tout increased speed and lower costs, commercial interests compromise scientific collaboration.
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Fay Lin @faylinphd.bsky.social · 26/06/2025
@arcinstitute.org‬ has announced the inaugural “Virtual Cell Challenge,” sponsored by NVIDIA, @10xgenomics.bsky.social and Ultima Genomics, which will evaluate the ability of AI models to generalize to new cell contexts for therapeutic applications. 1/ www.genengnews.com/topics/artif...
genengnews.com
Arc Institute Launches Virtual Cell Challenge to Accelerate AI Model Development
The open benchmark competition will evaluate the ability of AI-powered virtual cell models to generalize to new cell contexts for therapeutic applications.
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Fay Lin @faylinphd.bsky.social · 17/06/2025
Xaira Therapeutics has released the largest publicly available Perturb-seq dataset to train the AI-powered virtual cell for drug discovery! The work is described in Xaira's first preprint, capping a year after the company's $1 billion launch. www.genengnews.com/topics/artif...
genengnews.com
Xaira Therapeutics Releases Largest Perturb-Seq Dataset to Power the Virtual Cell
The AI unicorn's Perturb-seq atlas is publicly available and detects dose-dependent genetic effects to enhance predictive power for drug discovery.
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Reposted by Fay Lin
True Ventures @trueventures.com · 16/06/2025
More in GEN from @faylinphd.bsky.social: www.genengnews.com/topics/artif...
genengnews.com
Million Species Listing: Basecamp Research Unearths Trove of Sequence Data From Novel Species
BaseData aims to improve AI models in biology by offering a 10-fold expansion of protein diversity compared to all public databases combined.
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Fay Lin @faylinphd.bsky.social · 06/06/2025
Boltz-2 now predicts molecular binding affinity at newfound speed and accuracy - and it's open source! The permissive MIT license allows commercial drug developers to apply proprietary data and offers an advance over the structure prediction capabilities of AlphaFold 3. tinyurl.com/37c96c6y
genengnews.com
Boltz-2 Released to Democratize AI Molecular Modeling for Drug Discovery
The MIT model predicts molecular binding affinity at newfound speed and accuracy, offering a powerful tool for commercial drug discovery.
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Fay Lin @faylinphd.bsky.social · 21/05/2025
AI hype or reality - can we design antibodies from scratch (de novo)? In my latest for GEN, I unpack where de novo design is today and how arguments over terminology have clouded the industry’s shared mission of bringing better therapeutics to the clinic faster. tinyurl.com/4uamc8c5
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Scratch That? De Novo Antibody Design Enters the AI Drug Discovery Toolbox
Debates over AI antibody design terminology have clouded the industry’s shared mission of bringing better therapeutics to the clinic faster.
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Reposted by Fay Lin
Kevin Davies @kevinadavies.bsky.social · 15/05/2025
Excellent story from @faylinphd.bsky.social on the hot news from #ASGCT2025 — @kiranmusunuru.bsky.social and colleagues tailor the world’s first bespoke gene editor to treat KJ, an infant with an ultra-rare genetic disease, heralding a new era in precision med. www.genengnews.com/topics/genom...
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IMPRINT @imprintlabs.bsky.social · 20/05/2025
📣Major thanks to @faylinphd.bsky.social at GEN News for this lovely piece on IMPRINT! It was a pleasure for our founders — @beckbrachman.bsky.social, @victorgreiff.bsky.social, and Raymond Alvarez — to speak about our mission and research, and being NYC's first FRO. @convergentresearch.bsky.social
genengnews.com
Imprint Labs Launches to Pioneer "Forensic Immunology" For Chronic Disease
Imprint has raised $15 million to decode the body's immune memory for understanding chronic diseases, such as long-COVID and psychiatric disorders.
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Fay Lin @faylinphd.bsky.social · 15/05/2025
BREAKING NEWS: World’s first patient treated with personalized CRISPR therapy! Born with a severe metabolic disease with a 50% mortality rate, an infant has improved after receiving an individualized gene editing therapy, a glimpse of a new era in genomic precision medicine. tinyurl.com/m52udxht
genengnews.com
ASGCT 2025: World’s First Patient Treated with Personalized CRISPR Therapy
Treated with an individualized gene-editing therapy that corrects mutations directly on the genome, a patient shows improvement from a rare metabolic disease.
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Fay Lin @faylinphd.bsky.social · 30/04/2025
Introducing TranscriptFormer, the cross-species cell atlas! This new generative #AI model from @chanzuckerberg.bsky.social is trained on data from over 110 million cells from 12 different species, covering 1.5 billion years of evolution. tinyurl.com/2yet8k42
genengnews.com
The Cross-Species Cell Atlas: Chan Zuckerberg Initiative Releases TranscriptFormer AI Model
Trained on data covering 1.5 billion years of evolution, CZI’s new generative AI model probes cellular biology across species for therapeutic applications.
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Reposted by Fay Lin
Ben Kleinstiver @bkleinstiver.bsky.social · 23/04/2025
Thanks to @faylinphd.bsky.social from @GEN for featuring our manuscript! www.genengnews.com/topics/genom...
genengnews.com
Machine Learning Engineers Bespoke Cas9 Enzymes for Gene Editing
Researchers have developed a machine learning model that predicts Cas9 proteins that can be tailored with designer properties for therapeutic use.
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Fay Lin @faylinphd.bsky.social · 19/02/2025
New from @arcinstitute.org is "the largest publicly available #AI model for biology to date"! Evo 2 now includes information from all domains in life to expand its capabilities in generative functional genomics. @pdhsu.bsky.social @brianhie.bsky.social tinyurl.com/3t83vseh
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Arc Institute’s AI Model Evo 2 Designs the Genetic Code Across All Domains of Life
Evo 2 now includes information from humans, plants, and other eukaryotic species to expand its capabilities in generative functional genomics.
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Fay Lin @faylinphd.bsky.social · 18/02/2025
Leveraging protein structure prediction tools, researchers from Northwestern University present an #AI based framework to uncover potential structural design rules across receptor families for improved cell therapies. Read more at GEN: www.genengnews.com/topics/artif...
genengnews.com
AI-Guided Receptor Engineering to Improve Performance in Cell Therapies
Using protein structure prediction tools, researchers have uncovered receptor structure-function relationships to improve cell therapies.
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Reposted by Fay Lin
Kevin Davies @kevinadavies.bsky.social · 06/02/2025
Congrats to @faylinphd.bsky.social on her first exclusive story for GEN - Recursion presents promising phase II data on its AI drug for CCM: www.genengnews.com/topics/artif...
genengnews.com
Recursion Announces Promising Clinical Data on Lead AI-Based Drug Candidate for Brain Disease
Cerebral cavernous malformation (CCM) patients treated with oral drug, REC-994, showed reduction in total cerebral and brainstem lesion volume.
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Fay Lin @faylinphd.bsky.social · 06/02/2025
EXCLUSIVE: @recursionpharma.bsky.social announced favorable efficacy data in the Phase 2 trial for REC-994, the company’s lead AI-derived candidate to treat the potentially fatal brain disease, cerebral cavernous malformation (CCM). My latest for GEN: tinyurl.com/yc6wspz5 1/
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Recursion Announces Promising Clinical Data on Lead AI-Based Drug Candidate for Brain Disease
Cerebral cavernous malformation (CCM) patients treated with oral drug, REC-994, showed reduction in total cerebral and brainstem lesion volume.
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