Sign in

Fabian van Beveren

@fabianvanbeveren.bsky.social
140 followers 126 following 10 posts

Evolutionary biologist / bioinformatician #EVOLF #symbiosis #algae

PostsRepliesMedia
Reposted by Fabian van Beveren
New Phytologist @newphyt.bsky.social · 28/09/2026
Stepwise evolution of the developmental and symbiotic functions of DELLA in land plants @katharinamel1.bsky.social et al. nph.onlinelibrary.wiley.com/doi/10.1111/... #PlantScience
Proposed model for the stepwise evolution of DELLA functions in the green lineage.
11712
Reposted by Fabian van Beveren
Luis Javier Galindo @luisjagago.bsky.social · 04/09/2026
I am extremely happy to announce that I have been awarded an @erc.europa.eu ERC Starting Grant to lead the ProtistEye project! We will be diving into the function, architecture, and diversity of eye-like structures across different protists to better understand their evolution. Stay tuned for more!
15659
Reposted by Fabian van Beveren
Nicolas Bierne @couplingdmi.bsky.social · 22/07/2026
I find this new discovery of a transmissible cancer in catfish fascinating. As it’s described as the fourth example of contagious cancer, let me share this phylogenetic tree of species infected by such rarities.
1175
Reposted by Fabian van Beveren
Chloé Beaulieu @chloe-beaulieu.bsky.social · 15/06/2026
Such an honour to receive this price from the Académie des sciences, inscriptions et belles-lettres de Toulouse, for my PhD work! It's a very nice acknowledgement for the bryophyte research A huge thanks to the best supervisors ever: @maximebonhomme.bsky.social & @pierremarcdelaux.bsky.social
1133
Reposted by Fabian van Beveren
🌴 Scott Zona, Ph.D. 🌴 @scottzona.bsky.social · 05/05/2026
Neptunia oleracea can grow on moist soil, but as it grows into water, it produces corky tissue on its stems that allows the stems to float. The leaves are held above the water. They are sensitive to touch, like Mimosa pudica. 📷: Gwendolyn Stansbury CCBYNCND2. #aquatic #Fabaceae #Botany 🌾🧪🌱
Photo of straight stems growing out into open water. The stems are slightly zigzag and bear alternate, bipinnately compound leaves. The distal parts of the stems are covered with a corky excrescence that thins distally. The cork keeps the stems afloat.
417739
Reposted by Fabian van Beveren
PLOS Biology @plosbiology.org · 22/04/2026
Are you the less lucky of the co-first or co-last authors? @shougroup.bsky.social makes the case for changes to the way that equal contribution information is sent to indexing sites such as #PubMed. 🧪 #AcademicSky #publishing
plos.io
We need to correct the wide-spread omission of equal contribution in article indexing
Equal contribution designations (co-first and co-last authorship) is on the rise, yet this information is routinely lost, creating inequity in recognition and crediting. This Perspective calls for…
0209
Reposted by Fabian van Beveren
ISEP @isepprotists.bsky.social · 14/04/2026
New #ISEPpapers #preprint by @deemteam.bsky.social: Re-evaluating the eukaryotic Tree of Life with independent phylogenomic data www.biorxiv.org/content/10.6... #Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
a simplified evolutionary tree of eukaryotes with pictures of various microbes
16829
Reposted by Fabian van Beveren
Thomas Ott @ottlab.bsky.social · 13/04/2026
New pre-print from the lab! We show that the subtilase SBT12a is essential for symbiosome stabilization in Medicago. Using HUNTER proteomics, we even got some of its substrates. Have a look. www.biorxiv.org/content/10.6...
36437
Reposted by Fabian van Beveren
The Plant Cell @theplantcell.bsky.social · 19/03/2026
Duplicated genes find their space: Spatial transcriptomics illuminates evolutionary fates (Min-Yao Jhu , Fabian van Beveren , Bruno Guillotin) doi.org/10.1093/plce... #PlantScience @aspbofficial
doi.org
Duplicated genes find their space: Spatial transcriptomics illuminates evolutionary fates
Gene and genome duplications are fundamental forces driving plant evolution, leading to relaxed selection and expanding genetic toolkits (Van de Peer et al
0219
Reposted by Fabian van Beveren
Camille Puginier @puginiercamille.bsky.social · 10/03/2026
Thrilled to see this published! 😄 Our dispatch examines potential additional fungal symbionts in lichen partnerships and the key challenges in unraveling their biology. Thanks for involving me in this @talbotlabtsl.bsky.social @currentbiology.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
Fungal symbioses: A multiplicity of fungi in the lichen union
Increasing evidence suggests that lichens are not just a partnership between one fungus and one alga or cyanobacterium but may contain multiple intera…
13625
Reposted by Fabian van Beveren
Kassiani Panagiotou @kassipan.bsky.social · 05/03/2026
Just over ten years after the discovery of the first Asgard archaeal genomes, we revisit the rapid expansion of this remarkable archaeal lineage. From diverse genomes and metabolisms to eukaryotic signature proteins and the first cultured representatives. www.nature.com/articles/s41...
nature.com
Diversity, ecology, cell biology and evolution of the Asgard archaea - Nature Reviews Microbiology
The Asgard archaea have become a cornerstone of archaeal research, particularly for studies aiming to unravel the origin and early evolution of eukaryotes. This Review outlines the current state of th...
35227
Reposted by Fabian van Beveren
Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social · 05/03/2026
Finally out in @natmicrobiol.nature.com: Prediction of eukaryotic cellular complexity in Asgard archaea using structural modelling. Great work by @stephkoe.bsky.social @kassipan.bsky.social @jvhooff.bsky.social www.nature.com/articles/s41...
17328
Reposted by Fabian van Beveren
Katharina Melkonian @katharinamel1.bsky.social · 04/03/2026
1/ ✨ New preprint alert ✨ It is my pleasure to share: "Stepwise evolution of the developmental and symbiotic functions of DELLA in land plants" Here we investigated the role of the single GRAS transcription factor DELLA in #MyMarchantia doi.org/10.64898/202... #PlantScience A thread...
doi.org
54938
Reposted by Fabian van Beveren
Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social · 18/02/2026
Finally out in @nature.com: a new piece of the puzzle of how complex life evolved. Lead by @archaeal.bsky.social & @katyappler.bsky.social. Great collab with @greening.bsky.social and @kassipan.bsky.social. More pieces to follow soon! www.nature.com/articles/s41...
48530
Reposted by Fabian van Beveren
Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social · 12/02/2026
Two more weeks to apply - come join us () in The Netherlands as a postdoctoral researcher on large-scale metagenomic exploration of new lineages!
01727
Reposted by Fabian van Beveren
PM Delaux @pierremarcdelaux.bsky.social · 05/02/2026
1/9 Our latest paper on immunity mechanisms in Marchantia just out @pnas.org ! 🔽 Close collaboration between our former PhD students @karimaelm.bsky.social and @chloe-beaulieu.bsky.social ! and the old gard @jacquet-chris.bsky.social @maximebonhomme.bsky.social www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
45536
Reposted by Fabian van Beveren
Davis Vaughan @davisvaughan.bsky.social · 04/02/2026
dplyr 1.2.0 is out now and we are SO excited! - `filter_out()` for dropping rows - `recode_values()`, `replace_values()`, and `replace_when()` that join `case_when()` as a complete family of recoding/replacing tools These are huge quality of life wins for #rstats! tidyverse.org/blog/2026/02...
tidyverse.org
dplyr 1.2.0
dplyr 1.2.0 fills in some important gaps in dplyr's API: we've added a new complement to `filter()` focused on dropping rows, and we've expanded the `case_when()` family with three new recoding and re...
12463133
Reposted by Fabian van Beveren
Madeleine Baker @madeleinebaker.bsky.social · 12/01/2026
🚨 New preprint alert! 🚨 Excited to share my first preprint from my PhD! 🎉 We introduce a novel Aeschynomene evenia – Aphanomyces euteiches pathosystem to explore links between quantitative resistance and symbiosis in legumes. 🌱🔬 🧾 www.biorxiv.org/cgi/content/... 🧵 Thread: 1/9
biorxiv.org
A novel pathosystem between Aeschynomene evenia and Aphanomyces euteiches reveals new immune components in quantitative legume root-rot resistance.
Legumes are pivotal for sustainable agriculture, yet their productivity is hindered by soilborne pathogens such as Aphanomyces euteiches . This study introduces Aeschynomene evenia as a novel model to...
31813
Reposted by Fabian van Beveren
Gerben de Zwaan @gerbenz.bsky.social · 06/01/2026
Come join our group in the beautiful (currently very snowy) Wageningen!
012
Reposted by Fabian van Beveren
Quanta Magazine @quantamagazine.org · 30/11/2025
A newly discovered archaeal cell has a tiny genome and can’t metabolize biomolecules. It’s upending biologists’ definition of a living thing. “These types of organisms have been found before, but not as extreme as this,” said microbiologist Thijs Ettema.
quantamagazine.org
A Cell So Minimal That It Challenges Definitions of Life | Quanta Magazine
The newly described microbe represents a world of parasitic, intercellular biodiversity only beginning to be revealed by genome sequencing.
05223
Reposted by Fabian van Beveren
Camille Puginier @puginiercamille.bsky.social · 26/11/2025
Huge honor to receive this price! Glad to see the lichen research rewarded with such a distinction Thanks @pierremarcdelaux.bsky.social and @kellerjeanphd.bsky.social for your SUPERvision ✨ Merci @academiesciences.bsky.social pour cette opportunité et cette belle cérémonie!
43010
Reposted by Fabian van Beveren
Eva Nowack @evanowack.bsky.social · 25/11/2025
📢Postdoc position available!🧪🧫🧬 Our group is seeking a motivated researcher to investigate the molecular mechanisms driving host–endosymbiont interactions. Full details & application: karriere.hhu.de//index.php?a.... Please help us get the word out!
karriere.hhu.de
Postdoc (m/f/d) in Endosymbiosis Research
02435
Reposted by Fabian van Beveren
Alejandro Manzano Marín @handle.invalid · 19/09/2025
Diversity and spread of #cytoplasmicIncompatibility genes among maternally inherited #symbionts #SymbioSky doi.org/10.1371/jour...
doi.org
Diversity and spread of cytoplasmic incompatibility genes among maternally inherited symbionts
Author summary Cytoplasmic incompatibility (CI) is a reproductive strategy used by certain bacteria to promote their spread within arthropod populations. These bacteria, inherited through the mother, ...
041
Reposted by Fabian van Beveren
Camille Puginier @puginiercamille.bsky.social · 28/08/2025
So excited to see our review on how to detect horizontal gene transfers and their impact on plant functional evolution finally published in @theplantcell.bsky.social! Great teamwork between @lrsv-toulouse.bsky.social and LGDP-Perpignan 😎🥳🌱 academic.oup.com/plcell/advan...
academic.oup.com
Mechanisms, Detection, and Impact of Horizontal Gene Transfer in Plant Functional Evolution
Abstract. Horizontal gene transfers (HGT) have been observed across the tree of life. While their adaptive importance in bacteria is conspicuous, the occur
22916
Reposted by Fabian van Beveren
Kristina Prokina @kristina-prokina.bsky.social · 26/08/2025
New paper is out! We have studied the cute tiny Discocelia plataet sp. n. to obtain the first molecular data of the order Discocelida and clarify its cell structure. All this for a better understanding of the evolution of Cercozoa. onlinelibrary.wiley.com/doi/epdf/10....
24520
Reposted by Fabian van Beveren
Andrew Roger @andrewjroger.bsky.social · 25/08/2025
I gave a symposium talk at the European Society for Evolutionary Biology 2025 (#eseb2025) meeting last week and this was my title slide showcasing how I was speaking as an independent scientist because @dalhousieu.bsky.social @dalhousie.bsky.social has locked us out.
614871
Reposted by Fabian van Beveren
Stephan Köstlbacher @stephkoe.bsky.social · 20/07/2025
1. 🧵 New preprint out! WitChi: a fast, open-source Python tool to detect, quantify & prune compositional bias in MSAs. Lightweight, tree-free, scalable to 5k+ taxa... so we applied it to the GTDB archaea MSA. #ArchaeaSky #MEvoSky #MicroSky 🔗 doi.org/10.1101/2025... 💻 github.com/stephkoest/w...
biorxiv.org
WitChi: Efficient Detection and Pruning of Compositional Bias in Phylogenomic Alignments Using Empirical Chi-Squared Testing
Convergent evolution, where unrelated taxa independently evolve similar nucleotide or amino acid compositions, can introduce compositional bias into biological sequence data. Such biases distort phylo...
25423
Reposted by Fabian van Beveren
Kassiani Panagiotou @kassipan.bsky.social · 20/07/2025
Excited to share our work on WitChi! 🛠️🖥️ We tested it on the GTDB r220 archaeal supermatrix (5,869 taxa & 10,101 cols) removing 55% of sites in <2h. The phylogeny showed several interesting groupings with overall improved branch support: #phylogenetics #ArchaeaSky #MSA #opensource #MEvoSky #MicroSky
13011
Reposted by Fabian van Beveren
Ming Tommy Tang @tommytang.bsky.social · 14/07/2025
String manipulation is a critical daily task for bioinformaticians. Here is a cheatsheet using stringr: rstudio.github.io/cheatsheets... I probably use stringr::str_replace() once every other day... to clean up metadata (of course!) #rstats
04917
Reposted by Fabian van Beveren
Claus Wilke @clauswilke.com · 12/07/2025
AlphaFold is great, but contrary to public opinion it has not completely solved the protein folding problem. Much work remains to be done. clauswilke.substack.com/p/no-alphafo...
clauswilke.substack.com
No, AlphaFold has not completely solved protein folding
Biology is hard. Yes, even for AI.
312265
Reposted by Fabian van Beveren
STCmicrobeblog @stcmicrobeblog.bsky.social · 18/06/2025
𝗠𝗶𝗰𝗿𝗼𝗯𝗲 𝘄𝗶𝘁𝗵 𝗯𝗶𝘇𝗮𝗿𝗿𝗲𝗹𝘆 𝘁𝗶𝗻𝘆 𝗴𝗲𝗻𝗼𝗺𝗲 𝗺𝗮𝘆 𝗯𝗲 𝗲𝘃𝗼𝗹𝘃𝗶𝗻𝗴 𝗶𝗻𝘁𝗼 𝗮 𝘃𝗶𝗿𝘂𝘀 or maybe not. a 🧵 roland @environmicrobio.bsky.social‬ ‪and Krzysztof @ktjurdzinski.bsky.social‬ already commented, please also read their posts. www.science.org/content/arti... #MicroSky #SymbioSky #ProtistsOnSky
science.org
Microbe with bizarrely tiny genome may be evolving into a virus
With DNA focused almost entirely on replication, newly discovered organism blurs the line between cells and viruses
14818
Reposted by Fabian van Beveren
Daniel Tamarit @danieltamarit.bsky.social · 14/05/2025
New vacancy in my team! PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture. Please repost and share with talented MSc students in #evobio, bioinformatics or related :) www.uu.nl/en/organisat... #MEvoSky #MicroSky
384104
Reposted by Fabian van Beveren
PM Delaux @pierremarcdelaux.bsky.social · 23/04/2025
A fantastic resource for fern biology @natplants.nature.com 🔽! www.nature.com/articles/s41... Taking about ferns, are you interested by their immune system? Have a look at our recent preprint by @baptistebio.bsky.social @jacquet-chris.bsky.social 🔽 www.biorxiv.org/content/10.1...
nature.com
Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls - Nature Plants
New fern transcriptomes reveal repeated whole-genome duplications, unique gene families and distinct lignocellulosic evolution, providing a comprehensive database that underscores the ancient divergen...
04016
Reposted by Fabian van Beveren
Eva Nowack @evanowack.bsky.social · 19/03/2025
Out today: Exciting intermediate between endosymbiont and organelle identified! Endosymbionts in Angomonas deanei lost nearly all bacterial cell division genes. Instead, we identified a host-encoded protein, ETP9, that became specialized for endosymbiont division. 1/2 www.science.org/doi/10.1126/...
Angomonas deanei with flourescent-labeled nucleus and endosymbiont. ETP9 localizes at the endosymbiont division site.
58341
Reposted by Fabian van Beveren
Baptiste Castel @baptistebio.bsky.social · 20/03/2025
🔗 Preprint alert: www.biorxiv.org/content/10.1... 🧵 New insights into plant immunity: using ferns to understand evolution! 🌱✨🌿 Excited to share my first (but not last) published research at @lrsv-toulouse.bsky.social. A THREAD … [1/9]
biorxiv.org
Exploring fern pathosystems and immune receptors to bridge gaps in plant immunity
Land plants include angiosperms, bryophytes, lycophytes and ferns, each of which may deploy distinct strategies to resist pathogens. Here, we investigate fern-pathogen interactions by characterizing n...
74235
Fabian van Beveren @fabianvanbeveren.bsky.social · 12/03/2025
Excited to share our recent work on the evolution of ectomycorrhizal plants! 🌳 🧬 🖥️ doi.org/10.1111/nph.70054 With: Yvet Boele, @puginiercamille.bsky.social, @mbianc.bsky.social, Cyril Libourel, @maximebonhomme.bsky.social, @kellerjeanphd.bsky.social, @pierremarcdelaux.bsky.social A thread: (1/5)
doi.org
Ectomycorrhizal symbiosis evolved independently and by convergent gene duplication in rosid lineages
Click on the article title to read more.
15023
Reposted by Fabian van Beveren
Jolien van Hooff @jvhooff.bsky.social · 05/03/2025
Exciting news! I'm looking for a computational biologist to join my lab at Wageningen University & Research! It's a 3-year postdoc position on Holomycota genome architecture and evolution. Spread the word! www.wur.nl/en/vacancy/p...
wur.nl
Postdoc Comparative genomics and genome architecture in early-diverging fungi and their protist relatives (3-year position)
02839
Reposted by Fabian van Beveren
Maxime Bonhomme @maximebonhomme.bsky.social · 24/02/2025
Super interview sur @franceculture.fr de @chloe-beaulieu.bsky.social, sur nos travaux publiés dans @naturegenet.bsky.social ! www.radiofrance.fr/francecultur...
radiofrance.fr
Avec sciences : podcast et émission en replay | France Culture
Chaque matin, Alexandra Delbot décrypte en 5 minutes les dernières actualités scientifiques et leurs enjeux.
034
Reposted by Fabian van Beveren
Laboratory of Microbiology @mib-wur.bsky.social · 30/01/2025
Hello Bluesky! Follow us for updates on our Microbiology research here @w-u-r.bsky.social
0119