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Emma.C

@emma--c.bsky.social
43 followers 48 following 5 posts

Post-doc at Bf2i-MAP-INSA Lyon Bioinfomatic gurl that try to understand endosymbiosis 🪲🦠

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Reposted by Emma.C
Cecile Lorrain @ccilelorrain.bsky.social · 31/08/2026
Now accepted: Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina academic.oup.com/g3journal/ar...
academic.oup.com
Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina
Abstract. Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to ass
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 06/05/2026
EffectorGeneP: accurate gene annotation in pathogen genomes from infection transcriptomes www.biorxiv.org/content/10.64898/20…
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Emma.C @emma--c.bsky.social · 04/05/2026
Excited to share our new preprint on two haplotype-phased genomes of poplar rust 🧬 !
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Emma.C @emma--c.bsky.social · 02/11/2025
I'm so grateful for this journey 👩‍🎓! Thank you @sebbyrust.bsky.social and @ccilelorrain.bsky.social for your guidance, and to all the inspiring people who help me reach higher and keep moving forward 🦋
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Ursula Oggenfuss @oggenfussursula.bsky.social · 16/06/2025
Happy Barbara Day, happy #TransposonDay2025 to all that celebrate! Every day we get to work on transposons is such a privilege and joy, and I will never not be amazed by these jumping weirdos -the neutral, the bad and the good. Share some black walnut brownies with your friends today!
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Cecile Lorrain @ccilelorrain.bsky.social · 18/05/2025
Excited to share the first PhD preprint of @iglavincheska.bsky.social — now on bioRxiv! We explored the 3D genome of Zymo and found: 🧬 Rabl-like conformation 🧩 Accessory chr tethered to core centromeres 🏰 Self-interacting domains and boundaries with insulator motifs www.biorxiv.org/content/10.1...
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Toby Baril @tobybarilbio.bsky.social · 09/04/2025
Excited to share our latest preprint 🥳 Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen @danielcroll.bsky.social #TESky www.biorxiv.org/content/10.1...
biorxiv.org
Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen
Transposable elements (TEs) can drive the evolution of host-pathogen interactions and gains in antimicrobial resistance. However, how adaptive TEs arise in populations and historical contingencies aff...
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UMR IAM @umr-iam.bsky.social · 04/04/2025
#OurFridaySeminar: Lisa Beguinet studies the #Poplar #fungi interface and tries to understand how do #ectomycorrhizal fungi and #endophytes interact. PS: Who is who on this AI-generated image of the #IAM team?
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UMR IAM @umr-iam.bsky.social · 28/03/2025
#OurFridaySeminar: Elodie Muller shows that prevalence of #Cryptostroma corticale (causing #SootyBarkDisease of #Maple trees) in asymptomatic sycamore maples is larger than expected in France #TreeHealth #ForestPathology #UrbanTrees
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Thomas Badet @tbadet.bsky.social · 28/03/2025
🔥 Exciting news! The first Symposium on Repeat-Induced Point mutations is happening June 30 – July 1 at the University of Neuchâtel🇨🇭! 🔹 Want to join? Register here > forms.gle/XWTd4gJAXZSx... 🚨 Limited spots available! So first come, first served! 🔹 More info > crolllab.github.io/ripm2025/
crolllab.github.io
RIPM 2025
Symposium on Repeat-induced Point Mutation research, 30.6 - 1.7, Neuchatel, Switzerland
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Emma.C @emma--c.bsky.social · 14/03/2025
Friday = Seminar 🥳 Elsa Hilaire is going to talk about soil decomposition 🍄🍂 @umr-iam.bsky.social
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LaBella Lab @lablabella.bsky.social · 05/03/2025
Congratulations to all the award winners at #ecfg17 🍄🍄🎉🥳
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Cecile Lorrain @ccilelorrain.bsky.social · 05/03/2025
@jessstapley.bsky.social covering the history of QTL mapping in Zymoseptoria tritici done by the Plant pathology Group of ETH Zürich 🧬🧬 #ecfg17
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Cecile Lorrain @ccilelorrain.bsky.social · 04/03/2025
Great talk @iglavincheska.bsky.social, exploring the impact of DNA methylation variation on the 3D genome structure of Zymoseptoria tritici! #ecfg17
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Gulnara Tagirdzhanova @metalichen.bsky.social · 04/03/2025
Next, @fungage-lab.bsky.social on one of my favorite topics: starships 🚀 first, covering the discovery of unprecedentedly large mobile elements in Podospora. Shout out to @loreament.bsky.social, here with us in spirit #ecfg17
A large conference hall with a screen and a presenter next to it. The slide is titled "very clean site specific insertion sites". The slide shows an alignment of several sequences with an insertion in one of them plus a photo of Lore Ament
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Emma.C @emma--c.bsky.social · 04/03/2025
Best news of the day --> starbase.serve.scilifelab.se There is a starship db available ! 😊 #ecfg17
starbase.serve.scilifelab.se
starbase Home
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LaBella Lab @lablabella.bsky.social · 03/03/2025
I'm learning so much about TEs! Josje Romeijn asks if TE defense mechanisms are so good... How do TEs stick around? Could Horizontal Gene Transfer 🧬📨🧬 be the answer? They found 5518 potential horizontal TE transfer events across 1348 species! #ecfg17
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LaBella Lab @lablabella.bsky.social · 04/03/2025
What can we learn about extreme (and not so extreme) adaptation from Rhodotorula? From food 🍛 to space flight 🚀. And dishwashers 🍽️ and deserts 🏜️. The pink 🩷 yeast are widely distributed. 400+ new genomes reveals new weirdly large genomes.. Hybrids? Duplications? 🤷🏽‍♀️ #ecfg17 @hyphaltip.bsky.social
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Linda Horianopoulos @linder-surprise.bsky.social · 03/03/2025
My personal science hero, Barbara McClintock, has had a couple shout outs already at #ECFG17 🍄 Amazing to see how much we're learning about transposable elements in fungi!
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LaBella Lab @lablabella.bsky.social · 03/03/2025
Jumping back into jumping 🦘 genes 🧬 with Emma Corre Rust fungi have big genomes... Could TEs be to blame? Read more here! www.biorxiv.org/content/10.1... #ecfg17
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Cecile Lorrain @ccilelorrain.bsky.social · 03/03/2025
Well done @emma--c.bsky.social for presenting the large, full of TEs genomes of rust fungi ✨🧬✨ #ecfg17 @sebbyrust.bsky.social
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LaBella Lab @lablabella.bsky.social · 03/03/2025
Microbiomes can impact the interaction between plants 🌾 and fungi 🍄 Ultimately, can they breed for a healthy wheat microbiome #ecfg17 Read more: www.mdpi.com/2072-6651/16...
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Emma.C @emma--c.bsky.social · 03/03/2025
Ready for #ECFG17 ! 🍄🇮🇪
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UMR IAM @umr-iam.bsky.social · 11/02/2025
Happy International Day of Women and Girls in Science! We are proud to have so many brilliant female scientists in our #IAM department! 👩‍🔬🎓🍄🦠🧫🔬🌳🌲📊 We must never give up on #equality, #diversity & #inclusion 💪 #WomenInScience #WomenInSTEM @inrae-france.bsky.social @univlorraine.bsky.social
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Cecile Lorrain @ccilelorrain.bsky.social · 31/01/2025
Huge congratulations to Silvia on successfully defending her PhD! Excited to see what comes next in your scientific journey!
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Cecile Lorrain @ccilelorrain.bsky.social · 14/01/2025
Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄 Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes. 👏 Congrats to @Emma______C on her 1st PhD paper! 🙌 @SebbyRust, Emmanuelle Morin www.biorxiv.org/content/10.1...
biorxiv.org
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