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Eduardo Eyras

@edueyras.bsky.social
256 followers 169 following 45 posts

Director of the Shine-Dalgarno Centre for RNA Innovation EMBL Australia Group Leader Australian National University

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Eduardo Eyras @edueyras.bsky.social · 09/06/2026
We're looking for a new director for JCSMR jobs.anu.edu.au/jobs/directo..., home of the Shine-Dalgarno Centre for RNA Innovation, the Centre for Personalised Medicine, and much more awesome science
jobs.anu.edu.au
Director, John Curtin School of Medical Research - Canberra / ACT, ACT, Australia
Classification: Academic Level E Terms: Full time, Fixed term up to 5 years The Australian National University (ANU) is seeking to appoint an outstanding Director, John Curtin School of Medical Resear...
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EMBL Australia @emblaustralia.org · 05/02/2026
🔦 Spotlighting Prof @edueyras.bsky.social - EMBL Australia Group Leader & newly appointed Director of the Shine‑Dalgarno Centre for #RNA Innovation at ANU! 🔗 Read about his vision for the Centre: www.emblaustralia.org/eduardo-eyra...
emblaustralia.org
Eduardo Eyras appointed Director of Shine‑Dalgarno Centre for RNA Innovation | EMBL Australia
From being recruited through a highly competitive international search to Centre Director, Professor Eduardo Eyras has charted an impressive journey at EMBL Australia. After joining the John Curtin Sc...
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Eduardo Eyras @edueyras.bsky.social · 28/01/2026
Excited to share our latest preprint: "SWARM: A Single-Molecule Workflow for High-Precision Profiling of RNA Modifications" www.biorxiv.org/content/10.6... Led by Stefan Prodic #RNA #Epitranscriptomics #Nanopore 1/6
biorxiv.org
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Eduardo Eyras @edueyras.bsky.social · 20/01/2026
Thrilled to announce that I've been appointed Director of the ANU Shine Dalgarno Centre for RNA Innovation. Honoured to work with a world-class team advancing RNA science. Stay tuned for more exciting updates 🚀 jcsmr.anu.edu.au/research/cen... #RNA #RNAInnovation #ANU
jcsmr.anu.edu.au
The Shine-Dalgarno Centre for RNA Innovation
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Eduardo Eyras @edueyras.bsky.social · 18/01/2026
Very sad to hear about Peer Bork's passing. I met him as a very junior group leader in an early European network on splicing. He's been an inspiration for me since then. He visited us in Canberra ~2 years ago for my EMBL-A review. His legacy lives on www.embl.org/news/embl-an...
embl.org
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
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alex-sneddon.bsky.social @alex-sneddon.bsky.social · 08/01/2026
Thanks to our excellent team @edueyras.bsky.social and Stefan Prodic!
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alex-sneddon.bsky.social @alex-sneddon.bsky.social · 08/01/2026
New preprint 🚀 We uncover and correct systematic bias in nanopore-based RNA modification detection. ModkitOpt optimises pipelines using validated sites, increasing true positives while reducing unvalidated calls across contexts. 💻: github.com/comprna/modk... 📄: www.biorxiv.org/content/10.6...
biorxiv.org
Resolving systematic bias in nanopore-based RNA modification detection
Nanopore direct RNA sequencing has accelerated the growth of the epitranscriptomics field, yet nanopore-based RNA modification landscapes are generally unreliable due to the heuristic and unvalidated ...
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Eduardo Eyras @edueyras.bsky.social · 22/12/2025
SWARM: A Single-Molecule Workflow for High-Precision Profiling of RNA Modifications #RNAmods #epitranscriptomics #nanopore github.com/comprna/SWARM www.biorxiv.org/content/10.6...
biorxiv.org
SWARM: A Single-Molecule Workflow for High-Precision Profiling of RNA Modifications
Nanopore direct RNA sequencing promises to decode the epitranscriptome by detecting multiple modifications on individual RNA molecules, but its potential for biological discovery is hampered by high f...
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EMBL Australia @emblaustralia.org · 04/12/2025
And today: 🧬 Machine Learning in RNA Biology - with our very own Prof @edueyras.bsky.social 🧪 Text Mining for data organisation & understanding - Prof Richi Nayak 🧠 Building a genomic language model from scratch - Dr Ke Ding (4/5)
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Eduardo Eyras @edueyras.bsky.social · 18/08/2025
BenchMake: turn any scientific data set into a reproducible benchmark iopscience.iop.org/article/10.1... by Amanda Barnard pypi.org/project/benc...
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Eduardo Eyras @edueyras.bsky.social · 18/07/2025
Quantification of transcript isoforms at the single-cell level using SCALPEL nature.com/articles/s41... by @miriplass.bsky.social and her team
nature.com
Quantification of transcript isoforms at the single-cell level using SCALPEL - Nature Communications
Single-cell RNA-seq facilitates the study of transcriptome diversity in individual cells. Here, authors introduce a tool for isoform quantification at the single-cell level using 3’ scRNA-seq data, co...
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Eduardo Eyras @edueyras.bsky.social · 12/06/2025
Free online event about CSIRO Industry PhD (iPhD) program. You will also hear from current iPhD students who will share their experiences and advice events.csiro.au/Events/2025/...
events.csiro.au
CSIRO Industry PhD Program Information Session - CSIROBlog icon
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Richard Sever @richardsever.bsky.social · 04/06/2025
"a fascinating case study on the limits of AI in biology and the harms of current publishing incentives" rachel.fast.ai/posts/2025-0...
rachel.fast.ai
Rachel Thomas, PhD - Deep learning gets the glory, deep fact checking gets ignored
an AI researcher going back to school for immunology
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Matt Field @mattfield100.bsky.social · 26/02/2025
An opportunity exists for an exceptional early career bioinformatician to join the Field lab in tropical Cairns Australia, home of the Great Barrier Reef. Job offered until Dec 2026 however extension possible. Internationals welcome to apply. Closes Mar 26th! careers.jcu.edu.au/jobs/postdoc...
careers.jcu.edu.au
Postdoctoral Research Fellow, Bioinformatics - Cairns, QLD, Australia
James Cook University (JCU) is creating a brighter future for life in the Tropics and beyond, through education and research that makes a difference locally and globally.  We now have an opportunity a...
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Eduardo Eyras @edueyras.bsky.social · 05/06/2025
CSIRO Industry PhD position available in my group: Prediction of molecular interactions with RNA using AI research.csiro.au/iphd-opportu... #RNA #molecularinteractions #AI #academicjobs
research.csiro.au
Prediction of molecular interactions with RNA using AI - CSIRO Industry PhD Program opportunities
This Project will develop deep-learning models to predict interactions of ribonucleic acid (RNA) with other molecules. The expected outcomes are to improve prediction capabilities to decode RNA intera...
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Eduardo Eyras @edueyras.bsky.social · 03/06/2025
Boarding an infinitely long plane 😊
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Eduardo Eyras @edueyras.bsky.social · 30/05/2025
Don't miss AJ's talk (T-93) on dFORCE this afternoon in the RNA processing session (Ballroom A) #RNA2025 #RNA25
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Eduardo Eyras @edueyras.bsky.social · 30/05/2025
SWARM (Single-molecule Workflow for Analysing RNA Modifications) detects pseudouridine, m6A, and m5C on individual molecules from direct RNA nanopore signals (in both chemistries RNA002 and RNA004) github.com/comprna/SWARM see more on poster P2-396 at #rna2025 #RNA25 #RNAmods
github.com
GitHub - comprna/SWARM: Single-molecule Workflow for Analysing RNA Modifications
Single-molecule Workflow for Analysing RNA Modifications - comprna/SWARM
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Gal Haimovich ☣ 🧪🔬🎗 @grnfluoresceblg.bsky.social · 29/05/2025
Cool recent study: www.biorxiv.org/content/10.1...
biorxiv.org
Design of an orally bioavailable small molecule that modulates the microtubule-associated protein tau’s pre-mRNA splicing
Frontotemporal dementia with parkinsonism linked to chromosome 17 (FTDP-17) is caused by the aberrant alternative pre-mRNA splicing of microtubule-associated protein tau ( MAPT ) exon 10, the inclusio...
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Gal Haimovich ☣ 🧪🔬🎗 @grnfluoresceblg.bsky.social · 29/05/2025
pubs.acs.org/doi/10.1021/...
pubs.acs.org
The Druggable Transcriptome Project: From Chemical Probes to Precision Medicines
RNA presents abundant opportunities as a drug target, offering significant potential for small molecule medicine development. The transcriptome, comprising both coding and noncoding RNAs, is a rich area for therapeutic innovation, yet challenges persist in targeting RNA with small molecules. RNA structure can be predicted with or without experimental data, but discrepancies with the actual biological structure can impede progress. Prioritizing RNA targets supported by genetic or evolutionary evidence enhances success. Further, small molecules must demonstrate binding to RNA in cells, not solely in vitro, to validate both the target and compound. Effective small molecule binders modulate functional sites that influence RNA biology, as binding to nonfunctional sites requires recruiting effector mechanisms, for example degradation, to achieve therapeutic outcomes. Addressing these challenges is critical to unlocking RNA’s vast potential for small molecule medicines, and a strategic framework is proposed to navigate this promising field, with a focus on targeting human RNAs.
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Eduardo Eyras @edueyras.bsky.social · 11/05/2025
"Bullying is a means for mediocre scientists to rise to the top" … often supported by allies and networks. www.nature.com/articles/s41...
nature.com
How bullying becomes a career tool - Nature Human Behaviour
Nature Human Behaviour - How bullying becomes a career tool
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Eduardo Eyras @edueyras.bsky.social · 07/05/2025
Still available: CSIRO industry PhD project - Prediction of molecular interactions with RNA using AI for basic research and therapeutic discovery - collaboration with CSIRO and RNAfold.ai science.anu.edu.au/study/resear...
science.anu.edu.au
CSIRO Industry PhD Program (iPhD) scholarship
The CSIRO Industry PhD Program (iPhD) is a four-year research training program, focusing on applied research that benefits industry by solving real-world challenges. It aims to produce the next genera...
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Molecular Therapeutics Initiative @mti-ucb.bsky.social · 01/05/2025
🧬 Meet Dr. Liana Lareau, 2025 MTI Innovator Awardee! Her lab is using CRISPR + machine learning to reprogram RNA and silence toxic genes - offering hope for retinitis pigmentosa & beyond. A new era of mutation-agnostic therapeutics. #MTI #CRISPR #RNA moleculartherapeutics.org/2025-mti-inn...
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Eduardo Eyras @edueyras.bsky.social · 30/04/2025
CSIRO Industry PhD program: Prediction of molecular interactions with RNA using AI
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Eduardo Eyras @edueyras.bsky.social · 30/04/2025
research.csiro.au/iphd-opportu...
research.csiro.au
Prediction of molecular interactions with RNA using AI - CSIRO Industry PhD Program opportunities
This Project will develop deep-learning models to predict interactions of ribonucleic acid (RNA) with other molecules. The expected outcomes are to improve prediction capabilities to decode RNA intera...
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Reposted by Eduardo Eyras
Itai Yanai @itaiyanai.bsky.social · 29/04/2025
"Psychological safety" was the #1 predictor of an effective team in a study by Google. 'In other words, for a diverse team to work to its fullest capacity, everyone on the team must feel that it is safe to voice his or her opinions without being ridiculed.' 🙏@virusesimmunity.bsky.social
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Eduardo Eyras @edueyras.bsky.social · 29/04/2025
"Single-molecule multimodal timing of in vivo mRNA synthesis" a collaboration with Rippei Hayashi's lab, work led by AJ Sethi #RNA #pre-mRNA #splicing #RNAprocessing #m6A #polyadenylation www.biorxiv.org/content/10.1...
biorxiv.org
Single-molecule multimodal timing of in vivo mRNA synthesis
mRNA synthesis requires extensive pre-mRNA maturation, the organisation of which remains unclear. Here, we directly sequence pre-mRNA without metabolic labelling or amplification to resolve transcript...
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EMBL @embl.org · 23/04/2025
How is AI transforming life sciences – and what’s holding it back? Participants of the 5th EMBL Partnership Conference share insights on data challenges, validation hurdles, and why collaboration is key. 👉 www.embl.org/news/connect... #EMBLAIOneHealth
Group photo of the conference participants taken in front of the EMBL Imagine Centre in Heidelberg.
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Eduardo Eyras @edueyras.bsky.social · 05/03/2025
Amazing opportunity: Lecturer / Senior Lecturer in Machine Learning in Omics at Melbourne Integrative Genomics and the School of Mathematics and Statistics, University of Melbourne, Australia. jobs.unimelb.edu.au/en/job/91945...
jobs.unimelb.edu.au
Details : Lecturer / Senior Lecturer in Machine Learning in Omics : The University of Melbourne
Careers at The University of Melbourne
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Eduardo Eyras @edueyras.bsky.social · 02/03/2025
Great opportunity! PhD position in @mfeldbruegge.bsky.social lab #PhD #RNA
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Eduardo Eyras @edueyras.bsky.social · 26/02/2025
PhD opportunities in Computational Biology in fantastic labs!
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Marcus Buschbeck and Lab @marcusbuschbeck.bsky.social · 26/02/2025
ONLY 3 DAYS LEFT for computational biologists ...! To apply for our PhD student position - in Metabolic Genome Regulation - in aAML - cosupervised by Tanya Vavouri and me - at Josep Carreras Institute - in Barcelona, Spain - embedded into the MSCA HubMOL network Apply here: hubmol.eu Please RP!
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Torben Heick Jensen @heick.bsky.social · 12/02/2025
Postdoc positions on nuclear RNA biology available in the Heick Jensen lab. Come join us in tiny Denmark. Interested? - then follow this link: mbg.au.dk/aktuelt/ledi...
mbg.au.dk
Postdoc positions in Nuclear RNA Biology - Ledig stilling på Aarhus Universitet
Ledig stilling ved Institut for Molekylærbiologi og Genetik - RNA-biologi og -innovation, Aarhus Universitet
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Eduardo Eyras @edueyras.bsky.social · 07/01/2025
ModiDeC: a multi-RNA modification classifier for direct nanopore sequencing www.biorxiv.org/content/10.1...
biorxiv.org
ModiDeC: a multi-RNA modification classifier for direct nanopore sequencing
RNA modifications play a crucial role in various cellular functions. Here, we present ModiDeC, a deep-learning-based classifier able to identify and distinguish multiple RNA modifications (N6-methylad...
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Cancer Bioinformatics Australia @cancerbioinfoau.bsky.social · 15/12/2024
Save the Date for Cancer Bioinformatics Australia '25! The 2nd CBA will be in Sydney on June 18th 2025. Planning is well under way, with invited speakers including but not limited to @jwhwong.bsky.social and @nadia-davidson.bsky.social See cancerbioinformatics.au for info and updates.
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Eduardo Eyras @edueyras.bsky.social · 20/12/2024
Great way to end the year with some bowling. I feel really lucky to have such a fantastic research group! github.com/comprna/ jcsmr.anu.edu.au/research/gro...
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Eduardo Eyras @edueyras.bsky.social · 19/12/2024
Our technology platforms team is looking for a Senior Technical Officer responsible for broad-ranging long-read sequencing services and protocol optimisations for ONT and PacBio platforms jobs.anu.edu.au/jobs/senior-... @jcsmr.bsky.social
jobs.anu.edu.au
Senior Technical Officer (NGS) - Canberra / ACT, ACT, Australia
Classification: ANU Officer Grade 6 (Technical)Salary package: $93,646 - $97,929 per annum plus 17% superannuationTerms: Full Time, Fixed term (up to 2 years)Position overviewANU has an international ...
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Eduardo Eyras @edueyras.bsky.social · 18/12/2024
EMBL Australia invites expressions of interest for Scientific Head role www.emblaustralia.org/eoi-embl-aus...
emblaustralia.org
EMBL Australia invites expressions of interest for Scientific Head role | EMBL Australia
Professor James Whisstock is stepping down after eight transformative years as Scientific Head of EMBL Australia. Prof. Whisstock is a structural biologist at Monash Biomedicine Discovery Institute an...
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César de la Fuente @delafuentelab.bsky.social · 12/12/2024
(1/5) Traditionally, antibiotic discovery has centered on bacteria and fungi—until now. For the first time, we present a systematic exploration of Archaea—a major yet underexplored branch of the tree of life—as a source of novel antimicrobial compounds. www.biorxiv.org/content/10.1...
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Eduardo Eyras @edueyras.bsky.social · 11/12/2024
Fantastic Dagstuhl Seminar last week on Deep Learning and RNA - 5 days of exciting science discussions. It was great to meet again with friends and collaborators www.dagstuhl.de/en/seminars/... #RNA #AI #ML
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Eduardo Eyras @edueyras.bsky.social · 06/12/2024
Mis-splicing of a neuronal microexon promotes CPEB4 aggregation in ASD www.nature.com/articles/s41...
nature.com
Mis-splicing of a neuronal microexon promotes CPEB4 aggregation in ASD - Nature
The molecular mechanisms of how small changes in the degree of inclusion of a neuron-specific microexon in CPEB4 lead to dominant-negative effects in the expression of genes associated with autism spe...
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ARC Tracker @arc-tracker.bsky.social · 29/11/2024
We’ve had nearly 3 years of review, review, review. We need reviews, but it’s blindingly obvious that Australian research needs much greater Government investment while those reviews are done. This was true 3 years ago. Still true now. By @drjr.bsky.social
nature.com
Falling enrolments and funding cuts force Australian universities to take stock
The Australian Universities Accord offers a roadmap for reform, but there are major challenges ahead.
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Kathrin Leppek @katleppek.bsky.social · 29/11/2024
Excited to support, together with Kathi Zarnack, the team around @edueyras.bsky.social at ANU to study RNA modifications. Congrats! 🎉 www.emblaustralia.org/arc-discover...
emblaustralia.org
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 25/11/2024
The conserved landscape of RNA modifications and transcript diversity across mammalian evolution www.biorxiv.org/content/10.1101/202…
biorxiv.org
The conserved landscape of RNA modifications and transcript diversity across mammalian evolution https://www.biorxiv.org/content/10.1101/2024.11.24.624934v1
Gene expression programs underpin the development of shared phenotypes, yet the importance of transc
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Gaby Santos @gaby-santosrod.bsky.social · 25/11/2024
With these results we showcase how RNA has a major impact in phenotypic evolution due to Alternative Splicing and RNA modifications! Exciting times coming ahead! 🤓🖥️👩‍🔬🐭🐶🐮🐁🐥
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Gaby Santos @gaby-santosrod.bsky.social · 25/11/2024
At the epitranscriptome level (shoutout to Akanksha from @edueyras.bsky.social Lab for her hard work) we found that 14.2% of m6A RNA modifications are conserved across mammals, with 39% of analyzed genes containing a conserved m6A RNA modification.
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Gaby Santos @gaby-santosrod.bsky.social · 25/11/2024
The last part of my PhD research 🤓 is out!! If you are interested in RNA Biology -> Alternative Splicing and Epitranscriptomics + Evolution go have a look! A thread 🧵
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Eduardo Eyras @edueyras.bsky.social · 20/11/2024
We have an opening for an industry PhD position (CSIRO iPhD Program) to work with CSIRO and RNAfold.ai on "Prediction of molecular interactions with RNA using AI for basic research and therapeutic discovery". More info and eligibility requirements here: science.anu.edu.au/study/resear...
science.anu.edu.au
CSIRO Industry PhD Program (iPhD) scholarship
The CSIRO Industry PhD Program (iPhD) is a four-year research training program, focusing on applied research that benefits industry by solving real-world challenges. It aims to produce the next genera...
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