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Elle Barnes

@ecoevoelle.bsky.social
888 followers 1K following 38 posts

Salamander Lady. #Amphibian conservation + microbial ecology + disease + #genomics + #bioinformatics + community assembly | Asst Prof at RIT, #BYI, & JGI affiliate | 🐸🐕🧫🧬 🍕| BlackLivesMatter | she/her megalabrit.weebly.com

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Elle Barnes @ecoevoelle.bsky.social · 16/09/2026
🎉 Huge milestone for MEGA Lab! Congrats to @ritscience.bsky.social student, Emma on her preprint 🐸🧫 🧬 We tested how thermal mitigation against Bd/Bsal affect #amphibian #microbes using metatranscriptomics & metabarcoding to show warming reshapes composition & expression! doi.org/10.32942/X25...
doi.org
Temperature drives transcriptomic shifts in amphibian skin bacterial communities with consequences for fungal pathogen control
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Rob Denton @rddenton.bsky.social · 21/06/2026
Bummed to miss #Evol2026. For all those students looking for a position, we're recruiting MS students (polyploid genomics) and a PostDoc (conservation genomics) for next year. Shoot me an email!
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Elle Barnes @ecoevoelle.bsky.social · 22/06/2026
With the #BYI announcement buzz settled, I’ve been reflecting on what this award means to me. 🎓 It’s a win for R2s, a boost for #wildlifegenomics 🐸🧬🖥️, and a testament to my @rittigers.bsky.social lab of students ✨ Reflections here: bit.ly/4xGNhX9 Thank you to @beckman-foundation.bsky.social!
megalabrit.weebly.com
Reflecting on the BYI: A Win for Salamanders, Mentorship, and the Road Less Traveled
​If you had told me years ago that a career spent chasing salamanders through the woods would lead to being named a 2026 Beckman Young Investigator  (BYI), I’m not sure I would have believed...
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Elle Barnes @ecoevoelle.bsky.social · 13/06/2026
One of the best parts of any conference is meeting the next generation of amazing researchers ✨🐸 Thank you to the #GARD2026 team for organizing a great #mentorship program. We had great chats & made friendship bracelets! 🏆 Shout out to Lars Westerlinck who won a student presentation award!
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Elle Barnes @ecoevoelle.bsky.social · 11/06/2026
The MEGA Lab has been having a blast at #GARD2026 in Knoxville which just so happens to be placed next to the “Salamander Capital of the World” 💖 The week has been filled with great research, conversations, and so many #amphibians & #reptiles 🐸🦎🦠🌈🧬 #whyistherestillnosalamanderemoji
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Elle Barnes @ecoevoelle.bsky.social · 11/06/2026
✨ So proud of @ritscience.bsky.social MS student, Emma Thompson, for delivering a great flash talk about her research on #thermalecology & #microbiomes at #GARD2026! 🎉 🦠🐸 She impressed a large international audience of #herp disease experts. #proudmentor @gardconference.bsky.social
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Laura Alencar 🇧🇷🐍🦎 @alencarlrv.bsky.social · 11/06/2026
Interested in #macroevolution, #macroecology, and mountain biodiversity? I'm recruiting a #postdoc for an NSF-funded project at Yale, in collaboration with Martha Muñoz (Yale) and Maya Stokes (Florida State University). I'll be at #Evol2026 and happy to chat! Link below
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Elle Barnes @ecoevoelle.bsky.social · 09/06/2026
Beyond honored to be named a 2026 Beckman Young Investigator #BYI! I can’t wait to get started on this work with my wonderful lab of students and to contribute much-needed genomic resources to the field of #amphibiangenomics! 🐸🧬
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Elle Barnes @ecoevoelle.bsky.social · 08/06/2026
I have three amazing students presenting posters at #GARD2026! Come chat with them and get a salamander sticker ✨🙌🏻
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Elle Barnes @ecoevoelle.bsky.social · 05/05/2026
My amazing student Emma Thompson successfully defended her MS in Enviro Sci @rittigers.bsky.social! I am so honored to have been part of Emma’s journey and cant wait to see what she accomplishes at Rutgers’ Ecology PhD program! 🌟🎉🐸🦠🧬 Stay tuned for her 2 pubs combining #microbialecology & #omics!
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Elle Barnes @ecoevoelle.bsky.social · 27/04/2026
The MEGA Lab had a great time showing off our research on amphibian genomics and environmental microbiomes at #ImagineRIT! We spoke to over 400 people about the powerful integration of molecular biology and ecology/evolution research 🦠🔬🧬🐸🌎 @rittigers.bsky.social @ritscience.bsky.social
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Elle Barnes @ecoevoelle.bsky.social · 12/03/2026
✨Amphibian migration has begun here in Rochester, NY 🐸 I drafted a guide on my website on how to “herp” responsibly from a conservation scientist’s perspective. Please share! megalabrit.weebly.com/responsible-... #conservation #amphibian #communityscience #herpetology #ecology
megalabrit.weebly.com
Responsible herping
Every spring, thousands of amphibians embark on a perilous journey from their wintering grounds to breeding pools. This event is often referred to as the "Big Night." While they face many natural...
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Elle Barnes @ecoevoelle.bsky.social · 08/03/2026
Happy International Women’s Day! Thankful for all the funny, strong, creative, compassionate, supportive, and intelligent women in my life, especially those I get to share my lab with @rittigers.bsky.social! 💖✨🧬🔬 #WomeninSTEM #InternationalWomensDay
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Elle Barnes @ecoevoelle.bsky.social · 06/03/2026
As a fun lab meeting activity right before break, one of my students designed a @jeopardyofficial.bsky.social game about our lab! My favorite category was “slack quotes.” Feeling so lucky to have such amazing @ritscience.bsky.social students! 💖
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Elle Barnes @ecoevoelle.bsky.social · 12/02/2026
#MicroSky 🌎🐸🐢🐍🦎🦠🧫
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Elle Barnes @ecoevoelle.bsky.social · 31/01/2026
Last call for abstracts! Join us at the Global Amphibian & Reptile Disease conference 🐸🐍🦎🐢🌎🦠🧬🧪
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Daniel Bolnick @danielbolnick.bsky.social · 30/01/2026
If you are a student whose NSF GRFP application was returned without review for vague 'eligibility' reasons: 1) Let your department chair & Graduate School know. Encourage them to contact NSF & congress 2) Write to your congressional reps. 3) Write to grfp@nsf.gov to request re-consideration;
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Elle Barnes @ecoevoelle.bsky.social · 24/01/2026
Just a little over a week left to submit your abstract for #GARD26! 🧪🌎🧬🦠 🐸 Don’t miss out on networking with other herpetologists around the #salamander capital of the world!
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Elle Barnes @ecoevoelle.bsky.social · 07/01/2026
Registration is open! 🧪🌎
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Elle Barnes @ecoevoelle.bsky.social · 03/01/2026
Calling all herpers, ecologists, & #conservation researchers! 🧪🌏 🌟Join us in Knoxville! #GARD26 #microbiology #disease #herpetology #ecology
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Elle Barnes @ecoevoelle.bsky.social · 22/12/2025
🧪🧬🌎
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Elle Barnes @ecoevoelle.bsky.social · 14/11/2025
We want to hear about your research! Spread the word and apply by Feb 1, 2026 🌎🐸🦠
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Elle Barnes @ecoevoelle.bsky.social · 02/11/2025
Come be my colleague! Our college at RIT 🐅 has recently secured funding for four new professorships including one in #ecology & #evolution thanks to @simonsfoundation.org! ✨🧬🎉🧪🌎 www.rit.edu/news/simons-...
rit.edu
Simons Empire Faculty Fellowship to fund four College of Science positions
RIT’s College of Science will receive funding from the Simons Empire Faculty Fellows program for four junior tenure-track faculty positions.
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Elle Barnes @ecoevoelle.bsky.social · 30/10/2025
Are you a researcher studying amphibian & reptile disease? We want to hear about your research! Come join us at #GARD26 in Knoxville 🌎 Please share! #conservation #herpetology
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GARD conference 2026 @gardconference.bsky.social · 16/10/2025
Applications for travel grants to #GARD26 are due Nov. 1st! We encourage diverse participation especially by those with limited financial resources and early career researchers. Join us in Knoxville! 🐸🐍🐢🌎 Apply: utconferences.eventsair.com/third-gard-c... #herpetology #amphibian #reptile
utconferences.eventsair.com
Travel Grants - Third Global Amphibian and Reptile Disease (GARD) Conference - UT Conference Center
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Science Friday @scifri.bsky.social · 29/09/2025
For thousands of years, humans have harnessed microbes to ferment beer and bread. But ecologist Rob Dunn asks: Who’s really in charge of this relationship? buff.ly/BZyFzN6
“Our genes changed when we started to tangle with yeast and lactic acid bacteria, and theirs didn't. And so from the standard storytelling, we would say, well, they domesticated us.” -Dr. Rob Dunn
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Diogo Veríssimo @diogoverissimo.bsky.social · 30/09/2025
🌍 Languages of Life | Línguas da Vida | Bahasa Kehidupan 🗣️🌱 Biodiversity doesn’t speak only English. 🌳🐒 If species cross borders, our words should too. New paper in @ConLetters : why saving life also means using more languages 🔗https://conbio.onlinelibrary.wiley.com/doi/epdf/10.1111/conl.13139
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Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social · 25/09/2025
Please share with anyone who cares about NSF support for graduate students and take 30 seconds to sign and leave a comment. The deadline for the 2025 Graduate Research Fellowship Program is about one month away and literally no one can apply. #NSFGRFP jasonjwilliamsny.github.io/grfp2025/
jasonjwilliamsny.github.io
An Open Letter to U.S. STEM Leadership on the NSF Graduate Research Fellowship Program
An Open Letter to U.S. STEM Leadership on the NSF Graduate Research Fellowship Program
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Chester Zoo Science @chesterzoosci.bsky.social · 25/09/2025
An update to the Zoo Sphere of Influence model was recently published in the Biological Conservation journal (tinyurl.com/zoosphere) This model, first conceived in 2023, originally set out to replace the 50-year-old perception of zoos and aquariums... 🌎1/4
Image shows a wheel with colourful wedges. The wedges are marked with words like 'sustainability', 'wellbeing' and 'policy'
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Elle Barnes @ecoevoelle.bsky.social · 23/09/2025
My amazing @ritscience.bsky.social student, Emma, attended Princeton EEB scholars program last week. So proud of her! She is looking for #PhD programs this cycle so if you are looking for a student that can bridge field, lab, and computational biology… she is the PERFECT person for your lab! 👩🏼‍🔬🧬✨
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Elle Barnes @ecoevoelle.bsky.social · 18/09/2025
Come join us as we plan for the Global Amphibian & Reptile Disease Conference 2026! 🐸🐍🐢🦎🦠🌎
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Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 12/06/2025
📖Published📖 Neshat et al. introduce MicroEcoTools, an R package designed to test ecological framework predictions using microbial community data 🦠 🌎 🧪 Read the article here 👇 buff.ly/sXnPdhO
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Dirk-Jan Scheffers 🟥 @dirkscheffers.bsky.social · 13/06/2025
It’s a bacterium-eats-bacterium world… www.science.org/doi/10.1126/...
science.org
Bacteria poison and eat their neighbors
Bacteria leverage a secretion system to kill and scavenge nutrients from nearby competitors
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Elle Barnes @ecoevoelle.bsky.social · 07/06/2025
30+ dead turtles alongside NY Highway 90 killed by cars as they try to cross from @deptfishwildlife.bsky.social Montezuma National Wildlife Refuge 🤬😭 @governor.ny.gov we need wildlife crossings! @dec.ny.gov
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Elle Barnes @ecoevoelle.bsky.social · 03/06/2025
Another project from my time @jgi.doe.gov published @phytobiomesjournal.bsky.social ! Using a greenhouse soil transplant experiment we uncover the core microbiome of Camelina & show how past cropping regimes/precipitation can exert a legacy effect on microbiome assembly 🌾🦠🧬🧪 doi.org/10.1094/PBIO...
Image showing experimental design with map of Washington state showing increased precipitation from west to east. Soil was collected from field sites along this gradient and transplanted to the greenhouse where Camelina was grown in the soil under controlled conditions and their microbiome identified.
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Lyn Heideman @heidelyn.bsky.social · 15/05/2025
URGENT: The scientists' letter must be signed before May 19, when comments close. 🌎
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Colton the fish squeezer🐟🪴📚🏕️🐝 @fishsqueezer.bsky.social · 15/05/2025
Professors at USGS coop units were absolutely critical parts of my education at 3 different universities. They're probably affiliated with more useful conservation research than any other agency on earth. Join the rally to defend science next week! 🌎🐟🦉🐍🦊🌿🧪 #hydrology #Invert mobilize.us/s/JyAqUI
mobilize.us
Virtual Rally to Save the Cornerstone of Conservation Science · National Wildlife Federation
We need YOU as we rally in support of _critical_ federal government services at risk of being lost forever. The U.S. Geological Survey Ecosystems Mission Area is responsible for many of the programs t...
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Elle Barnes @ecoevoelle.bsky.social · 02/05/2025
In happier news: the MEGA Lab @rittigers.bsky.social celebrated the successful defense of our first MS student! ✨ @trminahan.bsky.social did an amazing job summarizing the last two years of research on salamander microbiomes. It is a MASSIVE dataset! Stay tuned for our preprint this summer 🐸🧬🧫🦠🌎
Student holding giant card signed by lab membersStudent presenting masters thesis called “environmental factors that influence the amphibian microbiome”Students sampling wild amphibians in the field
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Robin Hayward 🌳 🏳️‍⚧️ @canopyrobin.com · 28/04/2025
Getting a doctorate is hard work and it absolutely sucks when people swap out that hard-won gender-neutral expert title for something that both ignores your expertise and dismisses your gender. Apparently I'm not the only one who feels like this because you bought enough pins for me to make more!
Two circular hard enamel pin badges that say "it's Dr, actually". One has a trans flag design and one has a non-binary flag design
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Vaughn Cooper @vscooper.micropopbio.org · 28/04/2025
Important 🧵 if your research depends on genome assemblies from long (PacBio / ONT) reads. As @merenbey.bsky.social says, these may not be the genomes you are looking for. TLDR: the assemblers are wrong and predict too many small circular contigs.
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Elle Barnes @ecoevoelle.bsky.social · 28/04/2025
Our lab had a great time at our first #ImagineRIT event this weekend. Students talked to 500+ members of the public about their research in microbial ecology & genomics, and gave away lots of salamander swag! 🐸🧬👩🏼‍🔬👨🏻‍🔬🧪🌎🔬 @rittigers.bsky.social
Students teaching the public about salamandersPerson dressed in salamander costumePerson posing with giant salamander cut outBacteria art using bacteria isolated from salamander skin
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Tami Lieberman @contaminatedsci.bsky.social · 07/04/2025
Our commentary on the elegant in vitro microbiome coalescence experiments from @goldmandoran.bsky.social @ksxue.bsky.social et al is out. It was a pleasure to write about one of my favorite microbiome papers of the last few years. www.pnas.org/doi/10.1073/...
pnas.org
Mixing microbiomes in vitro reveals rules of community assembly | PNAS
Mixing microbiomes in vitro reveals rules of community assembly
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Elle Barnes @ecoevoelle.bsky.social · 21/03/2025
Happy salamander season to all who celebrate ✨🌈
Picture of spotted salamander in leaf litterPicture of spotted salamander in someone’s hands
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Elle Barnes @ecoevoelle.bsky.social · 05/02/2025
Amazing postdoc opportunity! Fletcher is a great mentor and wonderful human! Plus, Oregon is pretty darn beautiful.
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Oliver Meacock @olimeacock.bsky.social · 02/01/2025
Our framework explaining why ecological interactions change between contexts is out in Ecology Letters! A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes. onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Environment‐Organism Feedbacks Drive Changes in Ecological Interactions
Ecological interactions are central to our understanding of the composition and function of communities, but attempts to use them as a theoretical foundation for experimental ecology have been confou....
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Kelly Zamudio @kzutaustin.bsky.social · 18/12/2024
Hey All, plz repost, and share with grads, post-docs and disease folks! We are hiring a post-doc to work on mechanisms of immune responses of frog hosts to Bd infections. Deadline is February 1, 2025. Details for the position can be found at the link below. 🐸🐸🐸 zamudiolab.org/2024/12/17/p...
zamudiolab.org
Post-Doc position in the KZLab! Immune responses to pathogen infections in frogs
We are looking for an NSF-funded post-doc in our lab in the Department of Integrative Biology at the University of Texas at Austin. The work will examine immune mechanisms that potentially underlie…
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Carl Zimmer @carlzimmer.com · 12/12/2024
Over 30 prominent scientists call for a ban on the creation of a "mirror cell"--a microbe made of molecules that are mirror images of their natural forms. It could cause a mind-boggling global disaster. Here's my story [gift link] 🧪https://nyti.ms/3OUCXp6
nyti.ms
A ‘Second Tree of Life’ Could Wreak Havoc, Scientists Warn (Gift Article)
Research on so-called mirror cells, which defy fundamental properties of living organisms, should be prohibited as too dangerous, biologists said.
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Nora Pyenson @norapyenson.bsky.social · 12/12/2024
Is it “winner-takes all” when the simplest living things compete? Check out my fresh publication on phage coexistence in Science and a thread below🧵 www.science.org/doi/10.1126/...
science.org
Diverse phage communities are maintained stably on a clonal bacterial host
Bacteriophages are the most abundant and phylogenetically diverse biological entities on Earth, yet the ecological mechanisms that sustain this extraordinary diversity remain unclear. In this study, w...
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