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Dr. Kelly O.

@drkfo.bsky.social
709 followers 1.4K following 53 posts

Chief Scientist for Next-Generation Sequencing & Bioinformatics at The Utah Public Health Laboratory 🌟 SEQUENCE ALL THE THINGS! 🌟 I oversee all the sequencing and data analysis for infectious disease pathogens for the state. All opinions are my own!

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Reposted by Dr. Kelly O.
APHL @aphl.org · 22/07/2026
Save the date! APHL's ID Lab Con 2027 is March 15-18 in Atlanta, GA. Join public health lab professionals, epidemiologists, and researchers as we dive into the latest in infectious disease detection and surveillance. Registration opens September 2026. More details soon.
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Dr. Kelly O. @drkfo.bsky.social · 09/07/2026
A new publication from my team! Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah. journals.plos.org/plosone/arti...
journals.plos.org
Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah
Background Traditional disease surveillance, such as manual case investigation, was the primary method for identifying disease clusters during the COVID-19 pandemic. However, the pandemic also provide...
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Dr. Kelly O. @drkfo.bsky.social · 06/06/2026
Hey look, it’s me!!!
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plasmidsaurus @plasmidsaurus.bsky.social · 29/05/2026
A dream future
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Dr. Kelly O. @drkfo.bsky.social · 23/03/2026
One way we use pathogen genomics for public health here in Utah. www.deseret.com/lifestyle/20...
deseret.com
Why Utah uses sewage to find measles, COVID, flu outbreaks
Cutting-edge system was built during COVID but can pivot to other diseases
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Dr. Kelly O. @drkfo.bsky.social · 14/11/2025
Great collaboration between the CDC and state public health labs!!! www.sciencedirect.com/science/arti...
sciencedirect.com
New Delhi metallo-β-lactamase-producing Acinetobacter baumannii in the USA from October, 2013, to March, 2022: a retrospective molecular epidemiological analysis
Most US carbapenem-resistant Acinetobacter baumannii (CRAB) isolates harbour carbapenem-hydrolysing class D β-lactamases. Other carbapenemases, such a…
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Dr. Kelly O. @drkfo.bsky.social · 14/11/2025
www.saltlakecounty.gov/health/news/...
saltlakecounty.gov
Measles Case Confirmed in SLCo
Measles Case Confirmed in Salt Lake County; Source of Infection Unknown
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Reposted by Dr. Kelly O.
Seth Cotlar @sethcotlar.bsky.social · 13/09/2025
I’m curious. If an outspoken atheist was to set up tables outside churches on Sunday and on campuses of Christian colleges with a sign that said “God doesn’t exist, prove me wrong,” would that person be hailed as a figure who was trying to engage in good faith debate and heal our divisions?
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Dennis Goris | Cartoons @dennisgoris.bsky.social · 28/08/2025
I miss the old brand #CDC
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Virginia Gewin @virginiagewin.bsky.social · 29/08/2025
Going forward, what comes out of the CDC “will be a Frankenstein of science and ideology” podcasts.apple.com/us/podcast/t...
podcasts.apple.com
The C.D.C.’s Vaccine Chief on Why Quitting Was His Only Option
Podcast Episode · The Daily · 08/29/2025 · 29m
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Kathleen Bachynski @bachynski.bsky.social · 29/08/2025
Kennedy “is trying to fully dismantle the nation’s vaccination apparatus, regardless of what science says or what most people want. And less than a year into his tenure as health secretary, he is succeeding brilliantly.” We are all at deep risk unless we push Congress to actually act. NOW.
nytimes.com
Opinion | The Public Health Disaster Everyone Saw Coming
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News Eye @newseye.bsky.social · 28/08/2025
BREAKING: Big moment as CDC staff stage a mass walkout. They have lined the street outside its HQ to greet and salute the four top officials who have resigned in protest at RFK Jr’s attack on the agency’s science base. (🎥 AP)
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Pathoplexus @pathoplexus.org · 27/08/2025
🗓 Pathoplexus turns ONE! 🎂🎉 In the past year we’ve grown from 4 pathogens to a truly global, community-driven platform for transparent, equitable & impactful pathogen sequence sharing. 📰 Read the full update: pathoplexus.org/news/2025-08... 1/10
An image of a birthday cake with scientific doodles around it, 9 colourful candles, and the Pathoplexus logo in the middle, with the words 'Happy 1 year'
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ballerina X @ballerinax.bsky.social · 25/08/2025
Trump takes light www.sltrib.com/news/environ...
sltrib.com
Trump admin pulls nearly $62M in solar grants from Utah, leaving rural towns in the dark
The Trump admin clawed back $62M in federal aid to bolster solar energy across Utah, derailing projects for rural towns, tribes and families.
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Kathleen Bachynski @bachynski.bsky.social · 24/08/2025
“New Jersey health officials are issuing a warning about a possible measles exposure on NJ Transit and PATH trains. A Hudson County resident who was diagnosed with measles used public transportation while potentially infectious, the New Jersey Department of Health announced Friday.”
cbsnews.com
Warning issued for possible measles exposure on NJ Transit, PATH trains
A Hudson County resident who tested positive for measles used public transit while potentially infectious, health officials say.
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Dr. Kelly O. @drkfo.bsky.social · 19/08/2025
www.statnews.com/2025/08/18/r...
statnews.com
Former CDC Director William Foege: How public health can fight back in a time of dangerous nonsense
“Kennedy would be less hazardous if he decided to do cardiac surgery. Then he would kill people only one at a time,” writes former CDC Director William Foege.
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ballerina X @ballerinax.bsky.social · 02/08/2025
They're all cool with sexually assaulting children it appears www.sltrib.com/news/politic...
sltrib.com
Utah’s Senate president prompted law change that helped a teen charged with child rape
An 18-year-old high schooler was facing potential prison time and having to register as a sex offender until help came from a powerful ally — Senate President J. Stuart Adams.
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Molly Gale (Gale-Hammell Lab) @mollygale.bsky.social · 16/06/2025
🧬🌽 Happy Transposon Day! 🌽🧬 Today we celebrate the birthday of Barbara McClintock - scientist extraordinaire and discoverer of jumping genes. Still the only woman to have an unshared Nobel Prize in the biomedical sciences #TransposonDay2025
Barbara McClintock portrait
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Alt National Park Service @altnps.bsky.social · 15/06/2025
We’re honored to report that over 11 million showed up for today’s No Kings protest, and totals are still coming in. Just… wow. WOW 😮! There’s nothing more to say.
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Duncan MacCannell @drm.bsky.social · 15/06/2025
I once talked to Ice-T about skiing in the Delta customer service line in Salt Lake City.
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Dr. Kelly O. @drkfo.bsky.social · 28/05/2025
A little shameless self-promotion. www.aphlblog.org/how-next-gen...
aphlblog.org
How Next-Generation Sequencing Is Revolutionizing Food Safety  - APHL Blog
By Donna Campisano, specialist, Communications, APHL Last year, 113 people across 23 states were sickened with Salmonella Typhimurium after eating cucumbers. Another 61 people from 19 states developed...
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Dr. Kelly O. @drkfo.bsky.social · 19/05/2025
Check out some fun foodborne illness investigations! www.aphlblog.org/contaminatio...
aphlblog.org
Contamination Chronicles: How Laboratory Scientists Cracked Three Unusual Food Safety Cases - APHL Blog
By Donna Campisano, specialist, Communications, APHL What do raw milk, raw pet food and a drug-laced chicken sandwich have in common? They were all subjects of the “Contamination Chronicles” session a...
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Carl Zimmer @carlzimmer.com · 02/05/2025
Time to catch up on the past week’s news about science and medicine in the US. Whew. 1/10
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Last Week Tonight with John Oliver @lastweektonight.com · 28/04/2025
This week’s main story is about the budget and staffing cuts being made to public health agencies in the U.S. under RFK Jr.’s leadership, how those cuts will impact all of us, and some foolproof ideas for what scientists can do in the absence of totally superfluous stuff like, y’know, centrifuges.
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Alt CDC (they/them) @altcdc.altgov.info · 28/04/2025
💣The Carpet Bombing of HHS 💥 It's hard to describe how America's health agencies have been bombed and shelled in the past few months, but John Oliver is a good start. 🧵
youtu.be
RFK Jr. & HHS: Last Week Tonight with John Oliver (HBO)
YouTube video by LastWeekTonight
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Alt CDC (they/them) @altcdc.altgov.info · 28/03/2025
We agree that CDC needs to be more nimble and efficient. But CDC restructuring should be done by someone who understands the mission and respects science. RFKJ is not that person. He does not understand the work he is destroying and does not care to find out. www.medpagetoday.com/special-repo...
Picture of RFKJ in a dark suit and blue tie leaning back in an arm chair with both arms on the arm rests looking confidently back at the camera. Caption reads "Ask me why I combined HIV research...with occupational and environmental health."
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Alt CDC (they/them) @altcdc.altgov.info · 28/03/2025
Utah just banned fluoride in drinking water, undoing decades of science-based public health progress. Time for a fluoride #factcheckfriday:
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Dr. Kelly O. @drkfo.bsky.social · 29/03/2025
Those NAS worked great for almost 9 years. RIP!
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Alt CDC (they/them) @altcdc.altgov.info · 28/03/2025
CDC leadership has not been included in decisions that affect the agency's future. Termination emails will go directly from HHS to CDC staff. The tone from Center directors today: “sorry we don't know anything. Please tell us if you're RIF'd. We'll do a headcount Monday of those still standing".
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Dr. Kelly O. @drkfo.bsky.social · 27/03/2025
The hits just keep coming! This in the same week as the cuts to state public health agencies. www.washingtonpost.com/health/2025/...
washingtonpost.com
RFK Jr. announces big cuts to Department of Health and Human Services
In all, the agency will cut 20,000 positions, half of them through layoffs.
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Renee DiResta @noupside.bsky.social · 25/03/2025
RFK Jr puts an absolute crank with a history of retracted papers and license violations in charge of his “no really vaccines do cause autism” study. David Geier… incredible, really. Nice job, Bill Cassidy! www.washingtonpost.com/health/2025/...
washingtonpost.com
Vaccine skeptic hired to head federal study of immunizations and autism
A long-discredited researcher and vaccine skeptic will conduct a government study on whether vaccines cause autism.
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Jason Shepherd @jasonsynaptic.bsky.social · 25/03/2025
I can’t believe we just went through the worst pandemic of a generation and are now just going to ignore it for political reasons. As if COVID just disappeared and there’s no chances of another similar pandemic down the road 🤦🏻😨
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Eric Topol @erictopol.bsky.social · 25/03/2025
In <24 hours, Covid funding is DOGEd across HHS, CDC, NIH as if it and Long Covid didn't exist and there is no worry for future pandemics www.science.org/content/arti... www.nbcnews.com/health/healt... www.science.org/content/arti...
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Dr. Kelly O. @drkfo.bsky.social · 25/03/2025
This is absolutely devastating! www.nbcnews.com/health/healt...
nbcnews.com
CDC is pulling back $11B in Covid funding sent to health departments across the U.S.
“Now that the pandemic is over, the grants and cooperative agreements are no longer necessary," federal health authorities wrote to funding recipients this week.
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Alt CDC (they/them) @altcdc.altgov.info · 25/03/2025
We can confirm that CDC (Trump/DOGE) is making massive cuts to states. State and local health departments rely on federal funds to provide services. Immediate termination of grants, effective today, as well as steep cuts to COVID funds. We will update as we learn the full extent.
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Dr. Kelly O. @drkfo.bsky.social · 25/03/2025
Come check out @erinyoung.bsky.social poster at #IDLabCon ! Learn about how long read sequencing reads can be used to identify AMR genes!
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Christin Hanigan @chanigan.bsky.social · 24/03/2025
Fun way to kick off @aphl.org #IDLabCon with the next steps for next generation sequencing pre conference workshop! Thanks @drkfo.bsky.social @k-florek.net and Dan Evans for speaking!
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Dr. Kelly O. @drkfo.bsky.social · 24/03/2025
Kicking off the NGS pre conference workshop at APHL’s ID Lab Con! Nice presentation @k-florek.net #IDLabCon
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Madhu Pai, MD, PhD @madhupai.bsky.social · 19/03/2025
2023: mRNA vaccine scientists win the Nobel Prize 2025: US government cuts research on mRNA vaccines
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Duncan MacCannell @drm.bsky.social · 14/03/2025
Nice overview of CDC's Travelers Genomics Program, which screens for SARS-CoV-2 and other pathogens among the travelling public (voluntary swabs/aircraft blue water) at four US international airports. www.cbsnews.com/news/disease...
cbsnews.com
How disease detectives are hunting for viruses at major U.S. airports
A CDC program tests wastewater from airplanes, looking for pathogens that may have hitched a ride with passengers on long-haul international flights.
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🌈Dr. Frizzle @swilua.bsky.social · 08/03/2025
The Utah State Legislature banned pride flags on government buildings so the Salt Lake City government lit City Hall up in Pride Colors ☠️
Salt Lake City Hall Lit up in Pride Colors
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c0nc0rdance @c0nc0rdance.bsky.social · 12/05/2024
You've no doubt heard that the Great Library of Alexandria was destroyed in a fire and with it, centuries of knowledge, learning & prose. But that's not the ACTUAL story. The TRUE story of the destruction of the Great Library of Alexandria has more to teach us than the myth.
The fire of Alexandria, woodcuts by Hermann Göll, 1876.

The lighthouse tower and surrounding buildings of the Alexandria harbor are shown on fire, with smoke rising to the sky.  Boats bob on the surface of the water.  The impression is of chaos and ruin in process.
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Dr. Kelly O. @drkfo.bsky.social · 05/02/2025
WTF? Why is Musk at the CDC? He might get lost and stumble into the BLS4 without any PPE.
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Dr. Kelly O. @drkfo.bsky.social · 04/02/2025
A new article my team contributed to! Researchers have identified unique North American isolates of hypervirulent Klebsiella pneumoniae. Genome sequencing revealed distinct strains not closely related to known isolates. journals.plos.org/plosone/arti...
journals.plos.org
Unique North American isolates of severe metastatic hypervirulent Klebsiella pneumoniae strain infections with hepatic abscesses seen in young patients within Texas
Rationale Hypervirulent Klebsiella pneumoniae (hvKp) infections have principally been identified in Asia. Within a two-month period, two patients between the ages of 30 to 50 years old presented to a ...
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Dr. Kelly O. @drkfo.bsky.social · 30/01/2025
We have an opening on my team at the Utah Public Health Lab. We are looking for someone with NGS experience to help us sequence all the things! www.governmentjobs.com/careers/utah...
governmentjobs.com
Viral NGS Microbiologist II
Viral NGS Microbiologist II(Chemist/Microbiologist II)Are you knowledgeable in microbiology? Do you have experience performing next-generation sequencing (NGS)? The Utah Public Health Laboratory (UPHL...
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Don Moynihan @donmoyn.bsky.social · 23/01/2025
The assault on NIH is a test for how the national media covers the Trump admin: Trump is shutting down medical research! That is easy to communicate. Will they treat it as a 5 alarm fire in a way that forces the government to respond, or will they downplay & caveat it?
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Cody @rebelhealthguard.bsky.social · 22/01/2025
Federal health agencies have been instructed to pause all external communications, such as health advisories, weekly scientific reports, updates to websites and social media posts. Let’s not forget about the current H5N1 situation. www.washingtonpost.com/health/2025/...
washingtonpost.com
Trump officials pause health agencies’ communications, citing review
The agencies are charged with making decisions that touch the lives of every American and are the source of crucial information to health-care providers.
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Michelle Wille @duckswabber.bsky.social · 21/01/2025
>8000 virus genomes described from 40 species of bats across 52 locations in China. Huge diversity of novel viruses described - 3.4 fold increase from current diversity. 👉 www.nature.com/articles/s41...
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