Reposted by Ahmed Abdeen Hamed, PhDbioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 06/06/2026MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models www.biorxiv.org/content/10.64898/20… 011
Reposted by Ahmed Abdeen Hamed, PhDbioRxivpreprint @biorxivpreprint.bsky.social · 06/06/2026MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models www.biorxiv.org/content/10.64898/20… 011
Reposted by Ahmed Abdeen Hamed, PhDbioRxivpreprint @biorxivpreprint.bsky.social · 06/06/2026Temporal Biodynamics: An AI Platform for Identification of Stage-Relevant Targets and Biomarkers www.biorxiv.org/content/10.64898/20… 011
Reposted by Ahmed Abdeen Hamed, PhDarXiv cs.CL Computation and Language @cscl-bot.bsky.social · 01/06/2026Ahmed Abdeen Hamed, Luis M. Rocha: Protocol for evaluating ChatGPT in biomedical association generation and verification using a RAG-enabled, cross-model majority voting workflow arxiv.org/abs/2605.30400 arxiv.org/pdf/2605.30400 arxiv.org/html/2605.30400 011
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 04/06/2026Protocol for evaluating ChatGPT in biomedical association generation and verification using a RAG-enabled, cross-model majority voting workflow: STAR Protocols www.cell.com/star-protoco... #LLMs #GenAI #KnolwedeVerificationcell.comProtocol for evaluating ChatGPT in biomedical association generation and verification using a RAG-enabled, cross-model majority voting workflowWe present a protocol to evaluate ChatGPT’s ability to generate disease-centric biomedical associations. It outlines how we generate the associations, validate the biological entities using biomedical... 000
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 04/06/2026After 18th month worth of work this work is finally paying off. Thrilled to publish again along side with Dr. @lmrocha.bsky.social 011
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 04/06/2026Thrilled to see this piece is finally out!!! 010
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 16/05/2026Check out Josh's latest, soon to be Dr. Loecker! @joshloecker.com MechAInistic: An LLM-guided Multi-Agent System for Reasoning over Genome-Scale Constraint-Based Metabolic Models. #AgenticAI #MechanisticModeling #ConstraintBasedModeling #MetabolicModels www.biorxiv.org/content/10.6... 030
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 06/03/2026The firing of the domestic terrorist, Kristi Noem, doesn't bring back Renee Good or Alex Pretty. But it is a small measure of justice that feels somewhat right. We must continue to demand full justice until it is done! 000
Reposted by Ahmed Abdeen Hamed, PhDssieschoolbu.bsky.social @ssieschoolbu.bsky.social · 04/03/2026Congrats to Dr. Luís M. Rocha & Dr. Ahmed Abdeen Hamed on their SUNY - The State University of New York AI Platform Award to support work on “LLM-Accelerated Multilayered Network Construction for Breast Cancer Drug Repurposing and Combination Discovery through Agentic AI Collaboration." #BingPride 043
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 14/08/2025A nice blog on our publication titled: ["From knowledge generation to knowledge verification: examining the biomedical generative capabilities of ChatGPT"] #ChatGPT #KnowledgeVerification #SelfConsistency healthmedicinet.com/hmn-2025-can...healthmedicinet.comHMN 2025: How Can ChatGPT diagnose you? New analysis suggests promise however reveals information gaps and hallucination points – healthmedicinetWhen folks fear that they are getting sick, they’re more and more turning to generative synthetic intelligence like ChatGPT for a prognosis. But how correct are the solutions that AI offers out? 010
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 14/08/2025How Accurate Is ChatGPT When Asked About Your Health? a press release on our publication titled: ["From knowledge generation to knowledge verification: examining the biomedical generative capabilities of ChatGPT"]["https://shorturl.at/UwZKS"] #ChatGPT #Verification www.usnews.com/news/health-...usnews.com 000
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 12/08/2025I don't know if it is me or just #ChatGPT5 is too darn slow and not responding to every prompt before it crashes!!! 000
Reposted by Ahmed Abdeen Hamed, PhDAlessandro Crimi @alecrimi.bsky.social · 27/07/2025@medicalxpress.com.web.brid.gy wrote about our work with @drahmedabdeenhamed.bsky.social : " #ChatGPT’s performance in #biomedical queries, revealing accuracy in identifying disease terms (88–97%), drug names (90–91%), and genetic information (88–98%)" medicalxpress.com/news/2025-07... #LLMmedicalxpress.comCan ChatGPT diagnose you? New research suggests promise but reveals knowledge gaps and hallucination issuesWhen people worry that they're getting sick, they are increasingly turning to generative artificial intelligence like ChatGPT for a diagnosis. But how accurate are the answers that AI gives out? 021
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 25/07/2025Here is a nice piece of news coverage on our recent publication titled: "From knowledge generation to knowledge verification: examining the biomedical generative capabilities of ChatGPT". #ChatGPT #Health #FactChecking www.sciencenewstoday.org/can-you-trus...sciencenewstoday.orgCan You Trust ChatGPT with Your Health?In a quiet office buzzing with fluorescent lights and rows of high-performance computers, Ahmed Abdeen Hamed stared at something remarkable—and… 010
Reposted by Ahmed Abdeen Hamed, PhDScience X / Phys.org @sciencex.bsky.social · 17/07/2025ChatGPT demonstrates high accuracy in identifying diseases, drugs, and genetic terms, but shows notable gaps and hallucinations, particularly when interpreting symptoms and genetic accession numbers. doi.org/g9tgkzmedicalxpress.comCan ChatGPT diagnose you? New research suggests promise but reveals knowledge gaps and hallucination issuesWhen people worry that they're getting sick, they are increasingly turning to generative artificial intelligence like ChatGPT for a diagnosis. 032
Ahmed Abdeen Hamed, PhD @drahmedabdeenhamed.bsky.social · 24/07/2025The press release on our recent iScience publication titled: "From knowledge generation to knowledge verification: examining the biomedical generative capabilities of ChatGPT" medicalxpress.com/news/2025-07... #ChatGPT #KnowledgeVerification #MedicalDiagnoses #Hallucinationmedicalxpress.comCan ChatGPT diagnose you? New research suggests promise but reveals knowledge gaps and hallucination issuesWhen people worry that they're getting sick, they are increasingly turning to generative artificial intelligence like ChatGPT for a diagnosis. But how accurate are the answers that AI gives out? 040
Reposted by Ahmed Abdeen Hamed, PhDiScience @cp-iscience.bsky.social · 08/04/2025🤖 What if machines could learn to walk like humans, naturally and robustly, without being told how? A new #iScience study shows it's possible. No #motion data. No #demonstrations. Just smart, adaptive learning. 👉 www.sciencedirect.com/science/arti... #AI #Biomechanics #Robotics #MotorControl 032