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Hide Doi Lab.

@doi-lab.bsky.social
460 followers 302 following 8 posts

Hide Doi Lab., Biosphere Informatics Lab., Kyoto University, Japan. We are interested in ecology and environmental sciences, especially, community ecology, food web, eDNA, climate change ecologyweb.jimdofree.com

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Matthias C. Rillig @mrillig.bsky.social · 21/05/2026
Excited to share my review in Nature Reviews Microbiology on soil fungal ecology. Fungal diversity, ecology and functions in soil ecosystems Hope people will find it useful! www.nature.com/articles/s41...
nature.com
Fungal diversity, ecology and functions in soil ecosystems - Nature Reviews Microbiology
In this Review, Rillig explores the diversity of fungi in the soil ecosystem, their ecological interactions and diverse ecological roles in terrestrial ecosystems as well as anthropogenic factors that...
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Reposted by Hide Doi Lab.
Tuna @antea04.bsky.social · 10/04/2026
I'm a data scientist @ourworldindata.org and I need help from a botanist or someone local to Kyoto, Japan! 🌸 We present one of the world’s longest climate records: 1,200 years of peak cherry blossom dates in Kyoto. The researcher who maintained it, Prof. Yasuyuki Aono, sadly passed away last year.
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Hide Doi Lab. @doi-lab.bsky.social · 18/03/2026
2−3名の3年間の研究員(特任助教)、もしくは特定助教を募集する予定です。これからの募集ですので、5−6月以後採用になります。時系列解析、衛星情報、地理情報を用いた炭素量把握、群集解析などの研究です。未経験でもご興味あればぜひDMやメールでお問い合わせください。
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Hide Doi Lab. @doi-lab.bsky.social · 20/02/2026
Our new paper is published in Global Change Biology. Using long-term global lake dataset, we found temperature-driven nutrient limitation on algal bloom in lakes. onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Long‐Term Records Reveal Temperature‐Driven Nutrient Limitation and Predict Intensified Algal Blooms in Global Lakes
This graphical abstract illustrates the analytical framework and key outcomes of each step used to investigate the temperature–nutrient regulation of harmful algal blooms in global lakes. (A) Multi-y...
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Reposted by Hide Doi Lab.
Helmut Hillebrand @hillebr1.bsky.social · 03/01/2026
onlinelibrary.wiley.com/doi/10.1111/... @ckunze.bsky.social tested whether the concept of response diversity holds for pulse disturbances & realized response diversity. Turns out interaction strength is key. Great collaboration w @owpet.bsky.social & Shyamolina Gosh @icbm-uol.bsky.social @hifmb.de
onlinelibrary.wiley.com
Species Interactions Determine the Importance of Response Diversity for Community Stability to Pulse Disturbances
Caculations of response diversity can be based on species fundamental responses in isolation or their realised responses in the community using metrics of response dissimilarity and response divergen...
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Reposted by Hide Doi Lab.
Chikae Tatsumi @chikaetatsumi.bsky.social · 19/12/2025
Our paper is out in Plant and Soil!🎉 Microbial mechanisms underlying the reduction of soil mineral nitrogen availability by ectomycorrhizal tree introduction in cedar plantations🌲🌳Many thanks Sawada-san for leading this great work!! link.springer.com/10.1007/s111...
link.springer.com
Microbial mechanisms underlying the reduction of soil mineral nitrogen availability by ectomycorrhizal tree introduction in cedar plantations - Plant and Soil
Background and aims Forest mycorrhizal type and soil acidity strongly influence soil nitrogen (N) availability. Arbuscular mycorrhizal pure cedar plantations are expected to exhibit higher soil minera...
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Ryosuke Nakadai @r-nakadai.bsky.social · 19/12/2025
🌱 New paper out We confirm that the three-dimensional structure of nature’s values (i.e., instrumental, intrinsic, and relational values) also holds in Japan. In addition, traditional worldviews, such as animism and anthropomorphism, are associated with relational values. doi.org/10.1016/j.cr...
doi.org
Redirecting
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Hide Doi Lab. @doi-lab.bsky.social · 13/12/2025
Our new paper in Nature Comm. leading @ecolgonzalez.bsky.social found global patterns and driving mechanisms of organisms’ stoichiometry!
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Angélica L. González @ecolgonzalez.bsky.social · 09/12/2025
Thrilled to share our new #stoichiometry paper on the environmental correlates of plant and animal stoichiometry. This was a fantastic collaborative work supported by #idiv www.nature.com/articles/s41...
nature.com
Nitrogen deposition reveals global patterns in plant and animal stoichiometry - Nature Communications
Organisms vary in their nitrogen and phosphorus content, shaping ecological and evolutionary processes. This study shows that nitrogen deposition is a consistent global factor associated with plant an...
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Michał Filipiak @michalfilipiak.bsky.social · 09/12/2025
🧵1/5 🌍🔬 Our new paper is out! We identify the global mechanisms shaping the elemental composition of organisms — and the results overturn long-standing assumptions in ecology. 👇 Thread ↓ doi.org/10.1038/s414...
doi.org
Nitrogen deposition reveals global patterns in plant and animal stoichiometry - Nature Communications
Organisms vary in their nitrogen and phosphorus content, shaping ecological and evolutionary processes. This study shows that nitrogen deposition is a consistent global factor associated with plant an...
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Reposted by Hide Doi Lab.
Helmut Hillebrand @hillebr1.bsky.social · 12/12/2025
More than a year ago researchers from @hifmb.de and @icbm-uol.bsky.social started to write about different perspectives on marine biodiversity change from natural and social science perspectives. This morphed into a review paper that was published online today link.springer.com/article/10.1... 🧪
link.springer.com
Towards a broader perspective on marine biodiversity change - Marine Biodiversity
Biodiversity decline jeopardizes the foundation of natural ecosystems and human well-being, a concern that prompted major global agreements aiming to bend the curve towards a net positive biodiversity...
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Daniel Hering @danielheringude.bsky.social · 11/11/2025
Led by Wim Kaijser, we published a global analysis on how five different organism groups respond to seven stressor categories. New paper in Nature Ecology & Evolution. www.nature.com/articles/s41....
nature.com
Meta-analysis-derived estimates of stressor–response associations for riverine organism groups - Nature Ecology & Evolution
This global meta-analysis of freshwater stressor–response relationships reveals that the biodiversity loss of five riverine organism groups reflects elevated salinity, oxygen depletion and fine sedime...
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Reposted by Hide Doi Lab.
Kentaro K. Shimizu @kkshimizu1.bsky.social · 28/10/2025
Our new publication on HOBIT, a software tool for polyploid gene expression analysis. Compared with our previous method HomeoRoq (2014), HOBIT enables direct and higher-quality analysis of complex allohexaploid species such as bread wheat.
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Reposted by Hide Doi Lab.
Tatsuya Amano @tatsuya-amano.bsky.social · 19/09/2025
Women, non-native English speakers & those form low-income countries are disadvantaged in science but by how much? We found that women with non-English first languages from low-income countries publish up to 70% fewer in English than their counterparts. 1/5 doi.org/10.1371/jour... #languagebarriers
Scientific productivity gap based on English-language peer-reviewed papers. Shown are the maximum % differences in the number of peer-reviewed papers published by female native English speakers from a high-income country (-45%), female non-native English speakers from a high-income country (-60%), and female non-native English speakers from a lower-middle income country (-70%), compared to male native English speakers from a high-income country (red flag).
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Hide Doi Lab. @doi-lab.bsky.social · 20/05/2025
We have a special seminar (Hybrid) on 23 May (Fri.) 13:15-14:15 (JST) Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany) "Effects of multiple concurrent global change drivers on soils and ecosystems" You can get the Zoom link: kyoto-u-edu.zoom.us/meeting/regi...
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奥山雄大ver.欲深 @yokubukayama.bsky.social · 08/05/2025
というわけで論文出ました。サイエンス誌のトップページをトクノシマカンアオイとその送粉者の写真が飾っています。ちょっと自分でも信じられないです。 www.science.org
science.org
Science | AAAS
Science/AAAS peer-reviewed journals deliver impactful research, daily news, expert commentary, and career resources.
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Reposted by Hide Doi Lab.
Masato Yamamichi @masatoyamamichi.bsky.social · 09/05/2025
A paper with Miguel Gómez-Llano and @adamsiepielski.bsky.social entitled "Sexual conflict in resident species can facilitate establishment of a maladapted invader" was published in Am. Nat. @asn-amnat.bsky.social! doi.org/10.1086/736568
doi.org
Sexual conflict in resident species can facilitate establishment of a maladapted invader | The American Naturalist: Vol 0, No ja
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Hide Doi Lab. @doi-lab.bsky.social · 09/05/2025
We published a review paper on the application of deep metric learning, a new deep learning method, to ecosystem monitoring. www.sciencedirect.com/science/arti...
sciencedirect.com
Accelerating ecosystem monitoring through computer vision with deep metric learning
Significant progress has been made in the application of deep learning models to ecosystem monitoring. Deep learning has opened up new opportunities i…
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windowmoon@bluesky @windowmoon.bsky.social · 01/05/2025
おお、岡村さんが本を出版されている。 www.kyoritsu-pub.co.jp/book/b101311... Template Model Builderも扱われているらしい。MCMCではなく最尤法なのに複雑なモデルが謎に収束する例のアレ。点推定したいときや検定したいときに便利。
kyoritsu-pub.co.jp
Rで学ぶ個体群生態学と統計モデリング - 共立出版
岡村 寛 著
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Nature Portfolio @natureportfolio.nature.com · 01/05/2025
The distribution and behaviour of microplastics in the ocean is influenced by their size, with some microplastics potentially entering carbon cycles, according to a study in Nature. go.nature.com/3ScX6Zd 🌊 🧪
This is figure 1, which shows observations of subsurface microplastics in the ocean.
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Florian Altermatt @florianaltermatt.bsky.social · 26/03/2025
Our study ‘The #global #human impact on #biodiversity’ is out in @nature.com: www.nature.com/articles/s41... 🌍🌐🐟🌿🪲 Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet. 🧵1/5
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Reposted by Hide Doi Lab.
Helmut Hillebrand @hillebr1.bsky.social · 15/04/2025
We offer a 5-year research position in the #PlanktonEcology lab in Wilhelmshaven. Are you interested in empirically testing ecological concepts? We offer a stimulating scientific environment, experimental facilities & support to establish an independent research profile uol.de/en/job/postd...
uol.de
Postdoctoral researcher in Plankton Ecology // University of Oldenburg
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Helmut Hillebrand @hillebr1.bsky.social · 03/04/2025
@icbm-uol.bsky.social offers a fully funded professorship in theoretical oceanography. Join a great team of physicists, chemists, and biologists working on the marine environment. Oldenburg is a truly livable city and connected to a range of marine institutes in NW Germany uol.de/en/job/w2-pr...
uol.de
Professorship in Theoretical Physical Oceanography // University of Oldenburg
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Angélica L. González @ecolgonzalez.bsky.social · 03/04/2025
I’m thrilled to finally share our new dataset paper-years in the making! This has been an incredible rewarding project, and it was a true pleasure to work with such an amazing team of researchers. Huge thanks to supported by @idiv for the support www.nature.com/articles/s41...
nature.com
StoichLife: A Global Dataset of Plant and Animal Elemental Content - Scientific Data
Scientific Data - StoichLife: A Global Dataset of Plant and Animal Elemental Content
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Ecological Research @ecologicalresearch.bsky.social · 15/03/2025
We were honored to celebrate with our Awardees at the ceremony. Congratulations to all!👏 From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross #ESJ72 #ERPaperAward
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Jonathan Lenoir 🌳🌲🌴 @jonlen.bsky.social · 05/02/2025
Nice to see our opinion paper on #species #range #shifts & #species #traits among the 🔟 most downloaded papers in 2024 in #GCB 🌏🌐🧪 @globalchangebio.bsky.social shorturl.at/j7tQW
shorturl.at
Bringing traits back into the equation: A roadmap to understand species redistribution
In this opinion piece, we explore under which circumstances species traits are expected to explain the rates and directions of species redistributions in response to climate change and discuss how fu...
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Martin Lind @martinlind.bsky.social · 20/12/2024
We are announcing a postdoc position in population genetics at Halmstad Uni, Sweden Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics. hh.varbi.com/en/what:job/...
hh.varbi.com
Postdoctoral position in biology
Halmstad University Work at a University where different perspectives meet! Halmstad University adds value, drives innovation and prepares people and society for the future. Since the beginning in 198
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Julian Olden @oldenfish.bsky.social · 25/11/2024
Hydropower impacts on riverine biodiversity. A paper recently out in Nature Reviews - Earth and Environment with @fengzhihe.bsky.social @scjaehnig.bsky.social jcsvenning.bsky.social and others! A good one-stop shop for understanding the impacts of hydropower dams. www.nature.com/articles/s43...
nature.com
Hydropower impacts on riverine biodiversity - Nature Reviews Earth & Environment
Hydropower is a renewable energy source that can contribute to growing energy demands. This Review considers the ecological consequences of hydropower plants on riverine systems and emphasizes the urg...
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Dr.Kat Stewart @ecoevoedna.bsky.social · 17/11/2024
I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q
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Jim Elser @drlimnology.bsky.social · 23/11/2024
Updated Limnology! starter pack here: go.bsky.app/Qv3DLZ6
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Florian Leese @leeselab.bsky.social · 22/11/2024
Let‘s try a #metabarcoding starter pack to nucleate people interested. Welcome molecular #biodiversity monitoring people. Let’s try to keep us posted on updates regarding papers, projects, methods. Happy weekend.☀️#eDNA go.bsky.app/Qvqgknp
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Jim Elser @drlimnology.bsky.social · 22/11/2024
Here's a Limnology starter pack! I am sure I left great people out so tag me so I can add them. go.bsky.app/Qv3DLZ6
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Hide Doi Lab. @doi-lab.bsky.social · 24/09/2024
We published a new paper in PNAS to define the Anthropocene onset using anthropogenic fingerprints in global geological archives. We found that the number of anthropogenic fingerprints began to increase abruptly from 1952 ± 3 CE. www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Helmut Hillebrand @hillebr1.bsky.social · 22/03/2024
Very fun reunion with former lab members Hideyuki Doi @doi-lab.bsky.social and Izumi Katano. Thanks for the opportunity to talk about some ecological stability work, the great hospitality, and showing me around. Himeji Castle is truly amazing #PlanktonEcologyLab
Hideuki Doi, myself and Izumi Katano in front of Himeji Castle
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