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David Jones

@davidjonesbrain.bsky.social
376 followers 147 following 133 posts

Behavioral neurologist and AI director working to end degeneration of mental function and use technology to transform the practice of neurology. Neuro AI Program (NAIP) naip.mayo.edu www.youtube.com/channel/UCj9q9jnuNZ…

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Reposted by David Jones
Neurosynth @handle.invalid · 28/08/2026
Exciting update! You can run Image Based Meta-Analyses (IBMA) on our platform 🚀 We've known for ~TWO decades that images are better than coordinates, but data has never been shared/organized properly to make that an accessible reality. We did it, enjoy: compose.neurosynth.org
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David Jones @davidjonesbrain.bsky.social · 05/08/2026
How many have untreated NPH? What percentage would that answer need to be in order to use resources for proper diagnostics?
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David Jones @davidjonesbrain.bsky.social · 18/06/2026
Agreed, there has been lots of funding for #2 without any progress. In addition, clinical reality is a forcing function that will also lead to real progress on #1. I don’t think a pure #1 strategy has been neglected in any way.
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David Jones @davidjonesbrain.bsky.social · 17/06/2026
If anyone wants to make progress on Alzheimer’s and related conditions, the system needs to model the generative intelligence that emerges from hippocampal neocortical interactions. That’s not possible in this model, but I guess translation to every human disease is not a prerequisite.
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David Jones @davidjonesbrain.bsky.social · 11/06/2026
Dementia impacts cognition and individual’s conscious experience and FDG-PET best indexes these disturbances across all dementia etiologies in routine clinical settings. The Global Functional State Space is a useful model of this. These results in perturbation of consciousness reflect this as well.
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Reposted by David Jones
Christoffer G. Alexandersen @cgalexandersen.bsky.social · 10/06/2026
🧠 New paper out in 𝘉𝘳𝘢𝘪𝘯 Why does tau pathology often begin in the entorhinal cortex in Alzheimer’s disease? We show that brain-wide gradients of neuronal activity and amyloid-β may make this region particularly vulnerable to tau pathology. academic.oup.com/brain/articl...
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Reposted by David Jones
Earl K. Miller @earlkmiller.bsky.social · 06/06/2026
New results! The prefrontal cortex uses a compact, low-dimensional “coding space”. Information can be captured in just 3–6 dimensions. The brain compresses what we remember. Low-dimensional prefrontal representations of objects during working memory doi.org/10.64898/202... #neuroscience
doi.org
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Reposted by David Jones
Helena Gellersen @helenagellersen.bsky.social · 12/05/2026
How does the brain rapidly distinguish similar memories? We use 7T fMRI to show dynamic shifts between pattern separation and reinstatement signals in hippocampal CA3 and DG with changing task demands: doi.org/10.64898/202...
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
Therefore, conscious experience is a unique gift for scientific study consciousness not present in any other field of inquiry. Leveraging it feels strange because it is not possible in other scientific project.
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
I agree that there is no hard problem of consciousness, but subjective experience should not be dismissed as part of that framing. Not being able to directly observe a phenomenon is a hard problem for all of science….
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Reposted by David Jones
Jason Samonds @jason-samonds.bsky.social · 15/05/2026
Using a detection task with stimuli right at threshold, whole cell recordings in NHP primary visual cortex, and choice probabilities, we demonstrate how internal fluctuations related to anticipation of a stimulus multiplicatively interact with sensory responses.
nature.com
Fluctuating internal states mediate neural–behavioral covariations in V1 - Nature Neuroscience
The authors report surprising covariations between subthreshold activity of single V1 neurons and behavior, demonstrating that interactions between external sensory inputs and internal states are impl...
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
Consciousness is unique in that we have data about the phenomenon of interest that doesn’t exist in any other area of science. We have direct access to the phenomenon of interest via subjective experience. It just feels odd to use this privilege to move the project forward in the usual fashion.
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
Not being able to directly measure the phenomenon of interest isn’t the hard problem of consciousness, it’s the hard problem of science. Consciousness isn’t unique in this respect.
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
That’s how it moves forward. Correlations constrain generative models, and generative models are mechanistic. Perturbation and selective failure modes test the generator, not just the mapping.
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David Jones @davidjonesbrain.bsky.social · 16/05/2026
It’s an epistemic mechanism to formulate hypothesis to extend to questions about consciousness in general.
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Reposted by David Jones
David Jones @davidjonesbrain.bsky.social · 02/03/2026
Every brain tells a story. We need to listen better! #FDG-PET
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
I think the physiology of episodic memories, working memory, and aphantasia within the stochastic latent oscillatory diffusion model of hippocampal neocortical interactions may yield these results in the future.
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
We can use within and between subject variations in subjective reports to fuel an epistemic project that will eventually lead to brain measurements more directly related to subjective experiences.
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
I am positive that subjective reports have a measurable neural correlate via recording from the brain, but I don’t think that gets an closer to the problem :)
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
If you remove subjective reports from that project, I would find it very hard to help people. Is that utility evidence for their causal nature in a medical framework?
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
“Lying” is always on the differential for interpreting the reports, but so is telling the truth. A large part of my job is talking to people about their subjective experience and devising strategies to define a medical framework to address those concerns.
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
Or “why does this individual’s subjective experience change in brain state x relative to brain state y?”
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David Jones @davidjonesbrain.bsky.social · 15/05/2026
Can we scientifically ask “Why does this person have a subjective experience that’s different from another person?”
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David Jones @davidjonesbrain.bsky.social · 09/03/2026
What would a degenerative disease of this process look like in human beings?
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David Jones @davidjonesbrain.bsky.social · 07/03/2026
Interesting! What about the reverse? If you damage oligodendrocytes, do you damage CA1 electrophysiology?
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David Jones @davidjonesbrain.bsky.social · 02/03/2026
Every brain tells a story. We need to listen better! #FDG-PET
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Reposted by David Jones
bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 23/02/2026
Cortical oscillations reflect opponent ensemble dynamics through coordinated multifrequency activity www.biorxiv.org/content/10.64898/20…
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Reposted by David Jones
Kevin Mitchell @wiringthebrain.bsky.social · 23/02/2026
Beyond metaphor: quantitative reconstruction of Waddington's landscape and exploration of cellular behavior academic.oup.com/bib/article/... - really nice review of how big data and new computational methods and reviving an old conceptual framework
academic.oup.com
Beyond metaphor: quantitative reconstruction of Waddington landscape and exploration of cellular behavior
Abstract. Originally proposed as a conceptual metaphor, the Waddington landscape was used to illustrate the directional nature of embryonic development and
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David Jones @davidjonesbrain.bsky.social · 18/02/2026
Information processing in minds and machines like it as well! Check out our new description of the hippocampus as a Stochastic Latent Oscillatory Diffusion (SLOD) generative engine: bsky.app/profile/davi...
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Reposted by David Jones
Ramón Nartallo-Kaluarachchi @rnartallo.bsky.social · 17/02/2026
🚨PREPRINT In our new paper, we link RNNs and neural manifolds by introducing the DDM framework. We can train networks to embed an arbitary dynamical system in a latent subspace. We illustrate this with simple models of input-driven and autonomous associative memory. Enjoy! arxiv.org/abs/2602.14885
arxiv.org
Drift-Diffusion Matching: Embedding dynamics in latent manifolds of asymmetric neural networks
Recurrent neural networks (RNNs) provide a theoretical framework for understanding computation in biological neural circuits, yet classical results, such as Hopfield's model of associative memory, rel...
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Reposted by David Jones
SueYeon Chung @sueyeonchung.bsky.social · 10/02/2026
Our paper is out in @natneuro.nature.com! www.nature.com/articles/s41... We develop a geometric theory of how neural populations support generalization across many tasks. @zuckermanbrain.bsky.social @flatironinstitute.org @kempnerinstitute.bsky.social 1/14
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David Jones @davidjonesbrain.bsky.social · 10/02/2026
Here are individual FDG-PET brain scans from 4 patients with dysexecutive Alzheimer’s disease displayed in StateViewer. Does this look variation along the principal gradient of functional connectivity? Is this biology contributing to your model of Alzheimer’s disease?
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Reposted by David Jones
Simon Fisher @profsimonfisher.bsky.social · 04/02/2026
Most people can call up pictures in their minds, visualizing the past & summoning images of the future. But for ~4% of us, such mental imagery is weak or absent. New edition of @nature.com has a nice introduction to how research on this phenomenon (aphantasia) opens up novel windows into the brain.🧪
nature.com
Many people have no mental imagery. What’s going on in their brains?
People with aphantasia are offering a window into consciousness.
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Reposted by David Jones
Hugo Spiers @hugospiers.bsky.social · 02/02/2026
Fascinating neuropsych article from 1919 of a patient with spatial disorientation, with a loss of mental imagery for routes: watermark02.silverchair.com/archneurpsyc...
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David Jones @davidjonesbrain.bsky.social · 30/01/2026
We definitely propose neurological mechanisms that fit nicely with GWT! Looking forward to connecting. Here is some related work with me email associated: www.nature.com/articles/s41...
nature.com
A computational model of neurodegeneration in Alzheimer’s disease - Nature Communications
Low-dimensional representations of functional brain anatomy relevant for dementia syndromes may exist. Here the authors propose a computational model of mental functions to catalogue this anatomy in A...
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David Jones @davidjonesbrain.bsky.social · 30/01/2026
share.google/6R29WEhAex0c...
share.google
The Hippocampal Latent Diffusion Engine: A Computational Framework for Memory, Perception, and Cognitive Dysfunction
The hippocampus is a cognitive hub whose functions are disrupted in most major neurodegenerative dementias. Despite substantial knowledge of its anatomy, physiology, and circuitry, a unifying account ...
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David Jones @davidjonesbrain.bsky.social · 30/01/2026
They work for me… maybe put this in a search engine: “The Hippocampal Latent Diffusion Engine: A Computational Framework for Memory, Perception, and Cognitive Dysfunction”
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David Jones @davidjonesbrain.bsky.social · 30/01/2026
osf.io/preprints/ps... how about this one?
osf.io
OSF
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David Jones @davidjonesbrain.bsky.social · 30/01/2026
The brain does that too! doi.org/10.31234/osf...
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Reposted by David Jones
The Washington Post @washingtonpost.com · 28/01/2026
Bruce Springsteen released a pointedly emotional protest song Wednesday, amid widespread outrage over sweeping immigration raids that have led to violence and fatal shootings at the hands of federal agents.
wapo.st
Bruce Springsteen releases searing protest song in ‘Streets of Minneapolis’
“Streets of Minneapolis” names Renée Good and Alex Pretti, and excoriates “King Trump.”
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Hugo Spiers @hugospiers.bsky.social · 28/01/2026
Block that acetylcholine and just doesn't feel worth it any more... Cholinergic modulation of dopamine release drives effortful behaviour www.nature.com/articles/s41...
nature.com
Cholinergic modulation of dopamine release drives effortful behaviour - Nature
In the nucleus accumbens, acetylcholine boosts dopamine release to promote effortful behaviour.
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Reposted by David Jones
Edvard I Moser @edvardmoser.bsky.social · 28/01/2026
The hippocampal map has its own attentional control signal! Our new study reveals that theta #sweeps can be instantly biased towards behaviourally relevant locations. See 📹 in post 4/6 and preprint here 👉 www.biorxiv.org/content/10.6... 🧵(1/6)
biorxiv.org
Attention-like regulation of theta sweeps in the brain's spatial navigation circuit
Spatial attention supports navigation by prioritizing information from selected locations. A candidate neural mechanism is provided by theta-paced sweeps in grid- and place-cell population activity, which sample nearby space in a left-right-alternating pattern coordinated by parasubicular direction signals. During exploration, this alternation promotes uniform spatial coverage, but whether sweeps can be flexibly tuned to locations of particular interest remains unclear. Using large-scale Neuropixels recordings in freely-behaving rats, we show that sweeps and direction signals are rapidly and dynamically modulated: they track moving targets during pursuit, precede orienting responses during immobility, and reverse during backward locomotion — without prior spatial learning. Similar modulation occurs during REM sleep. Canonical head-direction signals remain head-aligned. These findings identify sweeps as a flexible, attention-like mechanism for selectively sampling allocentric cognitive maps. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, Synergy Grant 951319 (EIM) The Research Council of Norway, Centre of Neural Computation 223262 (EIM, MBM), Centre for Algorithms in the Cortex 332640 (EIM, MBM), National Infrastructure grant (NORBRAIN, 295721 and 350201) The Kavli Foundation, https://ror.org/00kztt736 Ministry of Science and Education, Norway (EIM, MBM) Faculty of Medicine and Health Sciences; NTNU, Norway (AZV)
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Reposted by David Jones
Simons Foundation @simonsfoundation.org · 27/01/2026
While AI systems have advanced tremendously, they still lag behind real brains in reliability & efficiency. A new computational unit developed at #FlatironCCN could help close that gap: www.simonsfoundation.org/biological…
simonsfoundation.org
Biological Brains Inspire a New Building Block for Artificial Neural Networks
Biological Brains Inspire a New Building Block for Artificial Neural Networks on Simons Foundation
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David Jones @davidjonesbrain.bsky.social · 27/01/2026
They might be interested in this: bsky.app/profile/drbr...
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David Jones @davidjonesbrain.bsky.social · 27/01/2026
Thank you! We worked hard on the paper and it ballooned to 11-12k words in the main text before we started cutting it down. My wife is a print and radio journalist and she said “you have to learn to kill your darlings!”
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David Jones @davidjonesbrain.bsky.social · 27/01/2026
Thanks. This is helpful. The challenge with this work is that it sits at the intersection of clinical reasoning (neurologic localization), dementia neuroanatomy and comp neuro. There are few audiences that are fluent across all three, which makes a single framing difficult. More attempts to come…
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David Jones @davidjonesbrain.bsky.social · 25/01/2026
Seems fitting to use #GenAI to help explain our new model of dementia and the hippocampus as a latent diffusion engine! Here is NotebookLM generated podcast on these topics: open.substack.com/pub/consilie...
open.substack.com
AI Brain Scans and the Generative Hippocampus
NotebookLM explains StateViewer, FDG-PET, and SLOD
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David Jones @davidjonesbrain.bsky.social · 25/01/2026
I will collect more material on my Substack, but maybe this NotebookLM (AI generated podcast) will give more of an accessible overview of where we are headed: open.substack.com/pub/consilie...
open.substack.com
AI Brain Scans and the Generative Hippocampus
NotebookLM explains StateViewer, FDG-PET, and SLOD
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Reposted by David Jones
DrBreaky @drbreaky.bsky.social · 25/01/2026
People have been looking at "AI & brains" through the lens of LLMs/transformers. But what latent diffusion? (think text-to-image/video platforms such as Midjourney). **Class conditioned latent diffusion and semantically cued hippocampus share a remarkably similar computational architecture...**
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