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The Dark Matter Project

@darkmatterproject.bsky.social
133 followers 63 following 46 posts

Studying The Dark Matter of the Genome - everything noncoding 🧬 A collaborative scientific project at NYU Langone. Account managed by Ran Brosh.

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The Dark Matter Project @darkmatterproject.bsky.social · 24/09/2026
How can genome engineering support ecosystem health? What are the ethical considerations? How is it regulated? Free webinars: 🧬 Oct 27: Science talks by Ben Novak & Beth Shapiro ⚖️ Oct 29: Ethics, regulation & governance panel w/ Art Caplan, Alex Erwin & Larisa Rudenko Register: bit.ly/46GXlTQ
Flyer for two free webinars from NYU Langone’s Center for Synthetic Regulatory Genomics: Vertebrate Genome Engineering for Ecosystem Health — Scientific Innovation (Oct 27) and Ethics, Regulation and Governance (Oct 29). Registration: https://bit.ly/46GXlTQ.
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The Dark Matter Project @darkmatterproject.bsky.social · 22/08/2026
ZATELLITE: a toolkit to visualize and manipulate human centromeres in live cells using synthetic zinc fingers biorxiv.org/content/10.6... Congrats to Nestor Saiz et al. from the Center of Synthetic Regulatory Genomics!
biorxiv.org
ZATELLITE: a toolkit to visualize and manipulate human centromeres in live cells using synthetic zinc fingers
Changes in the number of chromosomes or their spatial organization within the nucleus have critical consequences for cell fate. Yet capturing the karyotype or three-dimensional architecture of chromat...
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The Dark Matter Project @darkmatterproject.bsky.social · 06/07/2026
Synthetic biology and genome engineering in support of human, agricultural, and environmental security doi.org/10.3389/fbio... Check out the latest Perspective by Carolyn Chapman et al.
doi.org
Frontiers | Synthetic biology and genome engineering in support of human, agricultural, and environmental security
The rapid pace of innovation in synthetic biology and genome engineering elicits a need to reevaluate systems of oversight to ensure that biosafety and biose...
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The Dark Matter Project @darkmatterproject.bsky.social · 22/06/2026
Tomorrow! bit.ly/4urIZQH
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The Dark Matter Project @darkmatterproject.bsky.social · 18/06/2026
Happening next week - register now: bit.ly/4urIZQH Learn from world leaders in the fields of Xenotransplantation science, ethics and regulation!!!
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Reposted by The Dark Matter Project
The Dark Matter Project @darkmatterproject.bsky.social · 10/06/2026
Interested in the Science, Ethics and Regulation of Xenotransplantation? Join the next sessions in the "Rewriting Life" series! Register here: bit.ly/4urIZQH
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The Dark Matter Project @darkmatterproject.bsky.social · 10/06/2026
Interested in the Science, Ethics and Regulation of Xenotransplantation? Join the next sessions in the "Rewriting Life" series! Register here: bit.ly/4urIZQH
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Reposted by The Dark Matter Project
bioRxiv Genetics @biorxiv-genetic.bsky.social · 02/07/2025
Assemblatron: An Automated Workflow for High-Throughput Assembly of Big-DNA Libraries www.biorxiv.org/content/10.1101/202…
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The Dark Matter Project @darkmatterproject.bsky.social · 19/05/2026
Happening this Wednesday, 2 PM ET! Register here: nyulangone.zoom.us/webinar/regi...
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Reposted by The Dark Matter Project
The Dark Matter Project @darkmatterproject.bsky.social · 06/05/2026
Please join us for the “Rewriting Life” series kickoff webinar on May 20th, 2026, 2-3 PM (ET). Register here: nyulangone.zoom.us/webinar/register/WN_tyBjjq2WTHytv_nyovzV9w
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The Dark Matter Project @darkmatterproject.bsky.social · 15/05/2026
Synthetic Regulatory Genomics pmc.ncbi.nlm.nih.gov/articles/PMC...
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Addgene @addgene.bsky.social · 14/05/2026
We appreciate you sharing your improved toolkit with us! 💙🧑‍🔬 Find the plasmids here: www.addgene.org/browse/artic...
addgene.org
Addgene: Improved vector toolkit for genome writing in mammalian cells.
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The Dark Matter Project @darkmatterproject.bsky.social · 13/05/2026
Improved vector toolkit for genome writing in mammalian cells www.biorxiv.org/content/10.6...
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The Dark Matter Project @darkmatterproject.bsky.social · 13/05/2026
Want to deploy Big-IN or mSwAP-In in your own lab? Check out new plasmids we deposited on Addgene as well as updated protocols: www.thedarkmatterproject.org/resources
thedarkmatterproject.org
Resources — The Dark Matter Project
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The Dark Matter Project @darkmatterproject.bsky.social · 06/05/2026
Please join us for the “Rewriting Life” series kickoff webinar on May 20th, 2026, 2-3 PM (ET). Register here: nyulangone.zoom.us/webinar/register/WN_tyBjjq2WTHytv_nyovzV9w
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The Dark Matter Project @darkmatterproject.bsky.social · 17/03/2026
Improved vector toolkit for genome writing in mammalian cells www.biorxiv.org/content/10.6...
biorxiv.org
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The Dark Matter Project @darkmatterproject.bsky.social · 29/01/2026
Mammalian genome writing: Unlocking new length scales for genome engineering www.sciencedirect.com/science/arti...
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Reposted by The Dark Matter Project
Sudarshan Pinglay @sudpinglay.bsky.social · 23/01/2026
Happy to share that our review on mammalian genome writing with Jack Atwater, Ran Brosh, Jef Boeke, @jshendure.bsky.social and Matt Maurano is now out in @cellpress.bsky.social! www.sciencedirect.com/science/arti...
sciencedirect.com
Mammalian genome writing: Unlocking new length scales for genome engineering
The ability to design and engineer mammalian genomes across arbitrary length scales would transform biology and medicine. Such capabilities would enab…
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The Dark Matter Project @darkmatterproject.bsky.social · 20/01/2026
🧬Sign up to our free online 2026 Genome Writing Workshop 🧬 www.thedarkmatterproject.org/2026-genome-...
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The Dark Matter Project @darkmatterproject.bsky.social · 05/01/2026
www.biorxiv.org/content/10.6... Congrats to Dr. Noor Chalhoub who managed to defend her thesis and publish this paper on the same day!
biorxiv.org
Genome writing and Targeted Delivery of the NKX6-3/ANK1 gene cluster and its Type 2 Diabetes GWAS Variants to Human iPSCs
Genome-wide association studies (GWAS) identified over 600 loci containing single-nucleotide polymorphisms (SNPs) associated with type 2 diabetes (T2D), most of which reside in non-coding regions. Amo...
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The Dark Matter Project @darkmatterproject.bsky.social · 22/12/2025
Enhancer cooperativity in the folded genome www.sciencedirect.com/science/arti...
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The Dark Matter Project @darkmatterproject.bsky.social · 09/12/2025
Structure and evolution-guided design of minimal RNA-guided nucleases www.biorxiv.org/content/10.6...
biorxiv.org
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome editing capabilities. However, generating diverse multi-domain proteins with robust enzymatic...
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The Dark Matter Project @darkmatterproject.bsky.social · 06/12/2025
High-fidelity human chromosome transfer and elimination | Science www.science.org/doi/abs/10.1...
science.org
High-fidelity human chromosome transfer and elimination
The synthesis of human genomes and other gigabase-scale genomes will require new strategies. Here, we realized key steps in our pipeline for building synthetic human chromosomes. We established: (i) t...
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The Dark Matter Project @darkmatterproject.bsky.social · 29/10/2025
How could one engineer a mouse carrying a LETHAL allele? A thread 🧵
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The Dark Matter Project @darkmatterproject.bsky.social · 25/10/2025
One step closer to an LLM that understands novel DNA🧬 𝗜𝘁𝗲𝗿𝗮𝘁𝗶𝘃𝗲 𝗶𝗺𝗽𝗿𝗼𝘃𝗲𝗺𝗲𝗻𝘁 𝗼𝗳 𝗱𝗲𝗲𝗽 𝗹𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗺𝗼𝗱𝗲𝗹𝘀 𝘂𝘀𝗶𝗻𝗴 𝘀𝘆𝗻𝘁𝗵𝗲𝘁𝗶𝗰 𝗿𝗲𝗴𝘂𝗹𝗮𝘁𝗼𝗿𝘆 𝗴𝗲𝗻𝗼𝗺𝗶𝗰𝘀. pubmed.ncbi.nlm.nih.gov/41125441 Congrats Andre Ribeiro-Dos-Santos and Matt Maurano!
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Priya Prakash @pryprk.bsky.social · 24/10/2025
I am proud to share our work on X-linked Dystonia-Parkinsonism — a rare neurodegenerative movement disorder driven by a SINE-VNTR-Alu retrotransposon insertion in the TAF1 gene. Read our two companion papers: 🔹 www.biorxiv.org/content/10.1... 🔹 www.biorxiv.org/content/10.1... 🧵 Highlights below!
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The Dark Matter Project @darkmatterproject.bsky.social · 08/10/2025
We're thrilled to publish 2 exciting preprints today on the molecular pathology of X-linked Dystonia Parkinsonism! biorxiv.org/content/10.1... AND biorxiv.org/content/10.1... @nyulangone.bsky.social
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The Dark Matter Project @darkmatterproject.bsky.social · 25/09/2025
Megabase-scale human genome rearrangement with programmable bridge recombinases | Science www.science.org/doi/10.1126/...
science.org
Megabase-scale human genome rearrangement with programmable bridge recombinases
Bridge recombinases are naturally occurring RNA-guided DNA recombinases that we previously demonstrated can programmably insert, excise, and invert DNA in vitro and in Escherichia coli. In this study,...
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The Dark Matter Project @darkmatterproject.bsky.social · 12/09/2025
Structure of a polymorphic repeat at the CACNA1C schizophrenia locus | PNAS www.pnas.org/doi/10.1073/... Congrats to Raquel Moya and team!
pnas.org
Structure of a polymorphic repeat at the CACNA1C schizophrenia locus | PNAS
Genetic variation within intron 3 of the CACNA1C calcium channel gene is associated with schizophrenia and other neuropsychiatric disorders, but an...
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The Dark Matter Project @darkmatterproject.bsky.social · 11/07/2025
we're slow to post, but we do have a great website! www.thedarkmatterproject.org
thedarkmatterproject.org
The Dark Matter Project
The Center for Synthetic Regulatory Genomics at NYU Langone Health is tasked with the study of the genome's Dark Matter - the noncoding DNA and its role in human diseases.
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