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Alvaro Rodriguez del Rio 🍉

@alvarordr.bsky.social
2.2K followers 322 following 21 posts

Microbial ecology // Postdoc at the FU Berlin studying microbial responses to global change 🦠🌏 // Characterization of unknown prokaryotic genes 🧬🔍

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Alvaro Rodriguez del Rio 🍉 @alvarordr.bsky.social · 26/08/2026
Our analysis of the characteristics and distribution of uncultivated soil prokaryotes is now published in BMC Genomics! link.springer.com/article/10.1...
link.springer.com
Genomic characteristics and geographical distribution of uncultivated soil prokaryotes - BMC Genomics
Most soil prokaryotic species remain uncultivated, limiting our understanding of the terrestrial microbiome. Metagenomic sequencing, and particularly the study of metagenome-assembled genomes (MAGs), ...
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Matthias C. Rillig @mrillig.bsky.social · 20/08/2026
Twenty-two easy ways to power up your lab meetings | Nature by Hannah Docter-Loeb in Nature Careers Scientists share help and advice on how they got their research discussions flowing (including a contribution from our lab) www.nature.com/articles/d41...
nature.com
Twenty-two easy ways to power up your lab meetings
Scientists share help and advice on how they got their research discussions flowing.
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Jaime Huerta-Cepas @jhcepas.bsky.social · 05/08/2026
The CGMLab is seeking an experienced postdoctoral researcher to work on an international project focusing on the clinical associations of the microbiome of the female reproductive tract and heavy menstrual bleeding disorder. Applications and info at jobs.cgmlab.org/o/postdoc-po...
jobs.cgmlab.org
Postdoc position - Microbiome Signatures of Heavy Menstrual Blee…
The Comparative Genomics & Metagenomics Lab (CGMLab, https://cgmlab.org) at the Centre for Plant Biotechnology and Genomics (CBGP, Madrid) is seeking a postdoc…
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Jaime Huerta-Cepas @jhcepas.bsky.social · 05/08/2026
The CGMLab is seeking an experienced postdoctoral researcher to work on an EU project focusing on the bioprospecting of novel microbial enzymes and pathways through metagenomics. Further information and application form can be found at: jobs.cgmlab.org/o/postdoc-po...
jobs.cgmlab.org
Postdoc position - Metagenomic mining & Bioprospecting of novel …
The Comparative Genomics & Metagenomics Lab (CGMLab, https://cgmlab.org) at the Centre for Plant Biotechnology and Genomics (CBGP, Madrid) is seeking a postdoc…
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Matthias C. Rillig @mrillig.bsky.social · 04/08/2026
Check out our new review: Impacts of pollution on the soil microbiome just out in @natrevmicro.nature.com www.nature.com/articles/s41...
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Toni Gabaldón @tonigabaldon.bsky.social · 10/06/2026
Our paper "Gene ancestries reveal diverse microbial associations during eukaryogenesis.” is finally out in Nature. Eukaryogenesis was likely a gradual process shaped by multiple microbial partners and virus-mediated gene transfer, rather than a single binary symbiosis. doi.org/10.1038/s415...
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 13/04/2026
#MVIF 48 starts next week! Free registration: cassyni.com/s/mvif-48 ⭐️ Highlights: 🇺🇸 Rachel R. Rock 🇺🇸 @pamferretti.bsky.social ⭐️ Keynote: 🇦🇺 @pam-engelberts.bsky.social and @jamesvolmer.bsky.social ⭐️ Talks: 🇨🇳 Linxing Chen 🇨🇳 Zhemin Zhou 🇦🇺 Hoai-An Nguyen
mvif 48
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Sebastian Schmidt @tsbschm.bsky.social · 03/04/2026
Our work on 'hidden diversity' in unbinned contigs is now published in @natmicrobiol.nature.com : www.nature.com/articles/s41... See the linked threads for more details!
nature.com
Unbinned contigs expand known diversity in the global microbiome - Nature Microbiology
Re-analysis of over 92,000 metagenomes reveals hundreds of thousands of previously undescribed Bacterial and Archaeal clades hidden in plain sight.
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Matthias C. Rillig @mrillig.bsky.social · 17/03/2026
Final version published in Nature Reviews Earth and Environment: Constraining the effect of global change on antifungal resistance @natrevearthenviron.nature.com @changchao-li.bsky.social www.nature.com/articles/s43...
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Bram van Dijk 🏳️‍🌈 @bramvandijk.bsky.social · 25/02/2026
In case you missed it: our review titled "Spatial structure: shaping the ecology and evolution of microbial communities" is out! 🚨 Let me hit you with some highlights on why spatial structure matters. (and why you should care!) Sharing is appreciated 🙏 🧵👇 doi.org/10.1093/fems...
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Kathryn (Katy) Appler @katyappler.bsky.social · 18/02/2026
Beyond thrilled to share that our study has been published! This project encompasses years of work, including my thesis research on Asgard archaea in the @archaeal.bsky.social lab at @utmsi.bsky.social and @texasscience.bsky.social!!! #MicroSky #ArchaeaSky 1/12
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Physalia-courses@ONLINE @physaliacourses.bsky.social · 08/02/2026
🌍🧬 Our Environmental #Metagenomics course with @oskolkov.bsky.social & @luispedrocoelho.bsky.social is back (Oct 12–16)! Learn state-of-the-art metagenomic analysis with real Illumina & @nanoporetech.com data. From reads to high-quality #MAGs using modern #bioinformatics workflows shorturl.at/Pi4Qt
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Matthias C. Rillig @mrillig.bsky.social · 22/01/2026
Environmental drivers can shift in effect direction when acting in concert with other factors open.substack.com/pub/matthias...
open.substack.com
Environmental drivers can shift in effect direction when acting in concert with other factors
Results from a recent paper from our group in Nature Communications
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 23/01/2026
It's Friday! ...and a new #MVIF program is out! 🤩 Free registration: cassyni.com/s/mvif-46 Highlights: 🇺🇸 Rebecca L. Knoll 🇯🇵 Akito Sakanaka Keynote: 🇺🇸 @simrouxvirus.bsky.social ⭐️ Talks: 🇦🇺 @jeremyjbarr.bsky.social 🇨🇦 @erikbakkeren.bsky.social 🇨🇳 Guanxiang Liang
mvif 46 program
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Lukas Malfertheiner @lukasmalf.bsky.social · 16/01/2026
Closely related microbes tend to live in similar communities across Earth’s environments. We call this pattern community conservatism - extending established ecological patterns to the microbial world. 🧬🌍 #MicrobialEcology #Evolution Read the full article here: doi.org/10.1038/s415...
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Toni Gabaldón @tonigabaldon.bsky.social · 18/01/2026
Last days to apply for these postdoctoral positions, including one in my group. auspire.eu/research-tea...
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Luis Pedro Coelho @luispedrocoelho.bsky.social · 17/01/2026
I woke up to some very sad news... Peer was a giant of bioinformatics and computational biology and an inspiring mentor to everyone who had been in his group. I find myself repeating things he said all the time and will probably keep doing so for the rest of my life www.embl.org/news/embl-an...
embl.org
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
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Matthias C. Rillig @mrillig.bsky.social · 31/12/2025
Interested in working on the theory of and concepts behind multiple factor impacts on ecological systems and beyond? Please send expressions of interest. Starting Jan 2026, I would be awarding up to three postdoctoral fellowships on this topic (12 months; 2,5K €) to drive progress on this topic.
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Noah Fierer @noahfierer.bsky.social · 06/01/2026
New paper up - inspired by the periodic table of the elements, we attempted to organize bacterial diversity in genome-inferred trait space academic.oup.com/ismej/advanc...
academic.oup.com
Constructing a “periodic table” of bacteria to map diversity in trait space
Abstract. Despite an ever-expanding number of bacterial taxa being discovered, many of these taxa remain uncharacterized with unknown traits and environmen
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Aldert Zomer @aldertzomer.bsky.social · 08/12/2025
MetaPointFinder: A new approach for detecting mutation-driven antimicrobial resistance directly from metagenomic reads. Fills a major gap in current resistome profiling by capturing chromosomal AMR mutations that metagenome tools miss. github.com/aldertzomer/...
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Samuel Aroney @aroneys.bsky.social · 13/11/2025
“Bin Chicken” is now published in Nature Methods! It substantially improves genome recovery through rational coassembly 🧬🖥️. Applied to public 🌍 metagenomes, we recovered 24,000 novel species 🦠, including 6 new phyla. doi.org/10.1038/s415... @benjwoodcroft.bsky.social @rhysnewell.bsky.social 🧵1/6
Logo of Bin Chicken (Australian white ibis) on a rubbish bin, pulling out a strand of DNA
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Matthias C. Rillig @mrillig.bsky.social · 08/11/2025
Enjoyed the presentation 'Chrysalis. Artists in Labs' today as part of Berlin Science Week. Up on the stage also the lab's @alvarordr.bsky.social and artist Helena Nikonole, who gave a presentation on their planned interaction. Organized by our friends at Art Laboratory Berlin.
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Matthias C. Rillig @mrillig.bsky.social · 04/11/2025
As a part of Berlin Science week, I look forward to the event "Chrysalis. Artists in Labs", also featuring our lab's @alvarordr.bsky.social and our artist-in-residence Helena Nikonole berlinscienceweek.com/programme/ch...
berlinscienceweek.com
CHRYSALIS. ARTISTS IN LABS
During 2025 and 2026, Art Laboratory Berlin is unfolding the new innovative project CHRYSALIS. ARTISTS IN LABS with an interdisciplinary exchange between art and science in Berlin science laboratories...
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Cameron Thrash @jcamthrash.bsky.social · 30/05/2025
A genomic catalog of Earth's bacterial and archaeal symbionts www.biorxiv.org/content/10.1... #jcampubs
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Mario Vallejo-Marin @nicrodemo.bsky.social · 24/10/2025
Do you want to do a Masters in Evolutionary Biology? The call for applying to the MEME program is now open! MEME is a fantastic 2-year MSc between four European Universities on all areas of Evolutionary Biology. Apply and study in Sweden/France/the Netherlands/Germany/USA/Switzerland! www.evobio.eu
Picture of MEME students on the beach
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Alvaro Rodriguez del Rio 🍉 @alvarordr.bsky.social · 16/10/2025
Very happy to participate in the Berlin Science week 2025 w/ @artlaboratoryb.bsky.social ! Come join us in this exciting event 👇
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Corrie Moreau @corriemoreau.bsky.social · 19/09/2025
UPDATE: The 2025-2026 list of faculty and postdoc positions in ecology and evolutionary biology is out! Be sure to check out this active and helpful community run resources! docs.google.com/spreadsheets...
docs.google.com
ecoevojobs.net 2025-26
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Cameron Thrash @jcamthrash.bsky.social · 18/07/2025
A periodic table of bacteria?: Mapping bacterial diversity in trait space www.biorxiv.org/content/10.1... #jcampubs
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Macarena Toll-Riera @mtoll8.bsky.social · 10/09/2025
We are hiring a PhD student! Are you fascinated by microbes and evolution? Come join us in Barcelona!
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 28/08/2025
Season 5 is going to start 🔜 Check out the program and feel free to join the keynotes by presenting your work–abstract submission is open www.microbiome-vif.org/en-US/-/info... @kathlemon.bsky.social ‬ @saramitri.bsky.social @simrouxvirus.bsky.social @halllab.bsky.social @deepaagashe.bsky.social
mvif season 5 keynotes
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Matthias C. Rillig @mrillig.bsky.social · 21/08/2025
Celebrating the small wins in academia….a reminder to myself (and maybe you….) Please share with someone you think might also need this reminder :) open.substack.com/pub/matthias...
open.substack.com
Celebrating the small wins in academia
A little reminder...
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Alvaro Rodriguez del Rio 🍉 @alvarordr.bsky.social · 21/08/2025
Will be presenting our results on the effect of multiple global change factors on soil prokaryotes in #ESEB2025 poster 127 today, come say hi if you wanna know more!
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Alvaro Rodriguez del Rio 🍉 @alvarordr.bsky.social · 25/07/2025
This is heartbreaking and needs to stop www.bbc.com/news/article...
bbc.com
More than 100 humanitarian groups warn of mass starvation in Gaza
A joint statement says the Israeli government's "siege" has left aid supplies "totally depleted".
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Anne Grießhammer @ghammeranne.bsky.social · 17/07/2025
Seeing this published is even better than eating sweets! I am so happy and proud of whole @lisamaierlab.bsky.social, especially Lisa and @jdlcz.bsky.social who walked the funny/exciting/rocky road with me until the very end. Check it out! #science #microbiome #health www.nature.com/articles/s41...
nature.com
Non-antibiotics disrupt colonization resistance against enteropathogens - Nature
Non-antibiotic drugs from a wide range of therapeutic classes can alter the ability of gut commensals to resist invasion by enteropathogens, a previously underappreciated side effect of such drugs.
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Jaime Huerta-Cepas @jhcepas.bsky.social · 20/06/2025
Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees. biorxiv.org/content/10.1... Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes
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Jaime Huerta-Cepas @jhcepas.bsky.social · 25/06/2025
The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by Claudia Sanchis, part of her PhD thesis! www.biorxiv.org/content/10.1...
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DEEMteam_Orsay @deemteam.bsky.social · 17/06/2025
📣 We are proud of the publication of the second paper of @bbaker24.bsky.social PhD thesis. In collaboration with friends in Halifax we have studied the difficult question of the phylogeny of the DPANN archaea, composed of several phyla of highly reduced, fast-evolving epiparasites 🧵 rdcu.be/erkkU
rdcu.be
Phylogenomic analyses indicate the archaeal superphylum DPANN originated from free-living euryarchaeal-like ancestors
Nature Microbiology - Phylogenetic reconstructions with conserved protein markers from the 11 known DPANN phyla reveal their monophyletic placement within the Euryarchaeota.
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Ziqi DENG @dengziqi1991.bsky.social · 19/06/2025
We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees" biorxiv.org/content/10.1... Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
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Matthias C. Rillig @mrillig.bsky.social · 02/06/2025
Paper just out in @natcomms.nature.com by @alvarordr.bsky.social Soil microbial responses to multiple global change factors as assessed by metagenomics www.nature.com/articles/s41...
nature.com
Soil microbial responses to multiple global change factors as assessed by metagenomics - Nature Communications
Soils are usually exposed to multiple global change factors (like warming or contamination by pollutants), but the response of soil communities to combined global change factors is poorly understood. ...
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Alvaro Rodriguez del Rio 🍉 @alvarordr.bsky.social · 02/06/2025
Our paper on the effect of multiple global change factors on soil prokariotes and viruses, just published in @natcomms.nature.com ! @mrillig.bsky.social www.nature.com/articles/s41...
nature.com
Soil microbial responses to multiple global change factors as assessed by metagenomics - Nature Communications
Soils are usually exposed to multiple global change factors (like warming or contamination by pollutants), but the response of soil communities to combined global change factors is poorly understood. ...
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Sarahi L. Garcia @sarilog.bsky.social · 29/04/2025
Microbial model communities reveal widespread auxotrophies in abundant bacteria Our results highlight the value of cultivating microorganisms in groups to cultivate: 1) abundant microorganisms tinyurl.com/miintmodcom
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Ben Ewen-Campen @benforward3.bsky.social · 07/03/2025
✊Massive turnout for STAND UP FOR SCIENCE rally in Boston #StandUpForScience
Stand up for Science rally in Boston
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Ákos T Kovács @evolvedbiofilm.bsky.social · 16/01/2024
#NatureCommunity Behind the paper by Damian Hernandez Big box, small box: bacteria either have all around big niches or all around small niches communities.springernature.com/posts/big-bo...
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Cameron Thrash @jcamthrash.bsky.social · 13/02/2025
A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion www.nature.com/articles/s41... #jcampubs
nature.com
A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion - Nature
A metalloenzyme capable of oxidatively cleaving cellulose, found in a microbial community specialized in lignocellulose degradation, could enable sustainable biofuel production.
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Joint Genome Institute @jgi.doe.gov · 17/01/2025
In Science Advances: "We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we’ve actually captured. Turns out that despite all the genomes we’ve sequenced, we’ve only scratched the surface." -Dongying Wu 🖥️🧬🦠 biosciences.lbl.gov/2025/01/17/t...
biosciences.lbl.gov
Taking Stock of the Known and Unknown Microbial Space - Biosciences Area
Using publicly available genome sequence data generated over the past three decades, JGI researchers assess the known fraction of microbial diversity.
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Alex Probst @alexjprobst.bsky.social · 12/12/2024
Looking for a new target microbes for cultivation? Check out our new review on "Earth's most needed uncultivated aquatic prokaryotes"! www.sciencedirect.com/science/arti...
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Matthias C. Rillig @mrillig.bsky.social · 05/12/2024
New YouTube video out Soil in Crisis: global environmental change #Soil #WorldSoilDay www.youtube.com/watch?v=TAzN...
youtube.com
Soil in crisis: global environmental change
YouTube video by Life in the Soil
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Indra Roux @indraroux.bsky.social · 25/10/2024
First go at using bsky! An opportunity to share our recent preprint on the off-purpose impact of 1000+ industrial and agricultural pollutants on 22 gut microbiome species 🧪🧫🧬 at the MRC Tox. doi.org/10.1101/2024...
doi.org
Off-purpose activity of industrial and agricultural chemicals against human gut bacteria
Contamination by industrial and agricultural chemicals like pesticides are a cause of great concern due to the risk to human and environmental health. While these chemicals are often considered to hav...
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bigdatabiology.bsky.social @bigdatabiology.bsky.social · 19/11/2024
Hello World! We are new here, but we will be posting about our work, opportunities to engage, reaching out to other microbiome researchers &c www.big-data-biology.org
big-data-biology.org
Big Data Biology Lab
Website of the BDB-Lab (run by Luis Pedro Coelho) at the Centre for Microbiome Research (Queensland University of Technology)
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Matthias C. Rillig @mrillig.bsky.social · 13/11/2024
Our new paper is just out in Nature Communications: Microplastic diversity increases the abundance of antibiotic resistance genes in soil A collaboration with the group of Yong-Guan Zhu #SoilHealth #microplastic www.nature.com/articles/s41...
nature.com
Microplastic diversity increases the abundance of antibiotic resistance genes in soil - Nature Communications
The effects of microplastics (MPs) on soil microbial communities and antimicrobial resistance genes are not well understood. Here, the authors used microcosm studies to show that MP diversity, and par...
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