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Ziqi DENG

@dengziqi1991.bsky.social

Postdoc in @CBGP_Madrid developing computational methods for phylogenetic and metagenomic analysis in @cgmlaboratory github.com/dengzq1234/

Posts Replies Media

Ziqi DENG @dengziqi1991.bsky.social · 26/02/2026

Thank you! I'm glad that it is officially published! Feel free to checkout more details in our official documentation and demo for the paper doc: dengzq1234.github.io/TreeProfiler/ paper: github.com/dengzq1234/t...

dengzq1234.github.io

Welcome to treeprofiler’s documentation! — treeprofiler [1.2.2-beta] documentation

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Ziqi DENG @dengziqi1991.bsky.social · 21/08/2025

Many thanks travel funds support from Conexión BCB of @csic.es to make it happen!

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Ziqi DENG @dengziqi1991.bsky.social · 21/08/2025

It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social

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Reposted by Ziqi DENG

Jake Barber @jakenbarber.bsky.social · 19/08/2025

For those at #ESEB2025 today please come along to my poster! Excited to talk about how powerful mutation bias can be in adaptation :) @eseb2025.bsky.social @eseb.bsky.social

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Ziqi DENG @dengziqi1991.bsky.social · 17/08/2025

I will present my work TreeProfiler in #eseb2025 @eseb2025.bsky.social at poster session on Thursday 19:00-21:00. Welcome to stop by at P03 315! :)

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · 25/06/2025

The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by Claudia Sanchis, part of her PhD thesis! www.biorxiv.org/content/10.1...

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · 20/06/2025

Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees. biorxiv.org/content/10.1... Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes

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Ziqi DENG @dengziqi1991.bsky.social · 19/06/2025

We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees" biorxiv.org/content/10.1... Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · 06/03/2025

Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.bsky.social First time to cover new ETE4 features: Interactive viz of huge tree, profiling... In Madrid, April 21-25. Travel fellowships available!

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