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Agustin Corbat

@acorbat.bsky.social
528 followers 958 following 63 posts

Physicist, image analyst and 🔬 | Automation and teaching fan #Python #Pi | #bioimage #analyst at @biif_sweden

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Agustin Corbat @acorbat.bsky.social · 28/09/2026
English below Si necesitas ayuda con tu analisis de Bioimagenes, no dudes en ponerte en contacto! Podemos hacer el esfuerzo de bajar la barrera idiomatica si es una de las cosas que te limita. Not sure how to build or assess if your bioimage analysis is good? Do not hesitate in asking for help!
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Agustin Corbat @acorbat.bsky.social · 22/09/2026
Intentional mentorship builds stronger, more supportive scientific communities. Huge thanks to @latambioimaging.bsky.social for hosting this event, and to Hernan Grecco & Maria Victoria Repetto for their invaluable guidance in designing it! 🙌 #Mentorship #BioimageAnalysis #AcademicMobility
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Agustin Corbat @acorbat.bsky.social · 22/09/2026
2️⃣ Fostering regional collaboration It also drives regional mobility! By breaking down cultural/language barriers and spotlighting local grants, the format helps students discover and connect directly with regional host labs they might not have otherwise considered.
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Agustin Corbat @acorbat.bsky.social · 22/09/2026
1️⃣ A protected space for mentorship Large networking sessions can be overwhelming, especially for undergrads and shy early-career researchers. This small-cohort format creates a protected, low-pressure environment where students feel safe to ask real questions and build genuine mentor connections.
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Agustin Corbat @acorbat.bsky.social · 22/09/2026
Organizing meaningful mentorship events for young scientists shouldn't mean starting from scratch. 💡 We published a flexible, open-access guide on Zenodo for hosting interactive, small-cohort student–researcher encounters: 🔗 doi.org/10.5281/zeno...
doi.org
Event Planning Guide: Regional Student–Researcher Encounters & Academic Mobility Outreach
This proposal provides a comprehensive organizational framework for hosting an interactive, small-cohort networking encounter between students and regional researchers. It is intended as a flexible ad...
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Agustin Corbat @acorbat.bsky.social · 09/09/2026
I’m very grateful that the course was strongly international: @lecumberry.bsky.social participated on-site for the full course, and @sugansivaguru.bsky.social plus @schatzcz.bsky.social joined in remote sessions. Thank you so much: FUNDACEN, @latambioimaging.bsky.social and @globias.bsky.social!!!
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Agustin Corbat @acorbat.bsky.social · 09/09/2026
This is why Train-the-Trainer matters in LATAM: impact is exponential. Participants joined from Chile and different provinces of Argentina. Website: acorbat.github.io/2026_TtT_Cou... License: CC-BY 4.0
acorbat.github.io
🔬 Taller de Fundamentos en Análisis de Bioimágenes (Formación de Formadores)
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Agustin Corbat @acorbat.bsky.social · 09/09/2026
Beautiful examples from final work included: - using napari from Google Colab ((zenodo.org/records/2189...), - developing webpages with Quarto + GitHub Pages (adrianaglg.github.io/curso_fiji_v...), - workflows/tutorials ready for publication.
zenodo.org
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Agustin Corbat @acorbat.bsky.social · 09/09/2026
I’m so proud and grateful after our **Taller de Fundamentos en Análisis de Bioimágenes (Formación de Formadores)**. Participants grew a lot in fundamentals and reproducibility (macros, Git, Pixi), and also learned how to teach these skills to others. Zenodo: doi.org/10.5281/zeno...
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Marina B. Cuenca @cuencam15.bsky.social · 31/07/2026
Sad to be saying goodbye to Drosophila, but excited to get this work out on bioRxiv! If you are interested in the interplay of tissue flows and cool ways to mess them up, this read is for you :) Thanks to colleagues and co-authors! www.biorxiv.org/content/10.6...
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Agustin Corbat @acorbat.bsky.social · 07/07/2026
Hope to see you there!
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Agustin Corbat @acorbat.bsky.social · 02/07/2026
3/3 🛠️ Temario: Procesamiento básico, workflows reproducibles (Fiji, Python, Napari), Machine & Deep Learning, y estrategias pedagógicas. 🔗 Detalles y postulación: forms.gle/Ym27rxzptfaW... #BioimageAnalysis #LATAMscience
forms.gle
Formulario de Inscripción: Taller de Fundamentos en Análisis de Bioimágenes (Train-the-Trainer)
Formulario de Inscripción: Taller de Fundamentos en Análisis de Bioimágenes (Train-the-Trainer) ¡Bienvenido/a al formulario de inscripción para nuestro taller de fundamentos en análisis de bioimágenes...
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Agustin Corbat @acorbat.bsky.social · 02/07/2026
2/3 ✈️ Becas y financiamiento: Contamos con ayuda económica para pasajes/alojamiento y exenciones de aranceles gracias al apoyo de FUNDACEN. 📍 Sede: Pabellón 0+Infinito, FCEN-UBA.
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Agustin Corbat @acorbat.bsky.social · 02/07/2026
📢 ¡Inscripción abierta! Taller de Fundamentos Análisis de Bioimágenes (Train-the-Trainer) 🔬💻 Para investigadores, estudiantes de posgrado y personal de microscopía de LATAM que busquen mejorar y enseñar el análisis de imágenes. 📅 3-7 de agosto, Buenos Aires (Presencial) ⏳ Límite: 16 de julio 👇🧵
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Agustin Corbat @acorbat.bsky.social · 30/04/2026
Thrilled to see @globias.bsky.social in Nature Methods! 🔬 Huge thanks to everyone who took the survey—more results are on the way!📊 Want to help? Join us to coordinate regional surveys or global efforts. Let’s build this community together!🤝 Read: www.nature.com/articles/s41... #GloBIAS #BioImage
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Agustin Corbat @acorbat.bsky.social · 09/04/2026
Dejo un link que si funciona: forms.gle/i35cynNZCJYp...
forms.gle
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Agustin Corbat @acorbat.bsky.social · 09/04/2026
⚠️ La inscripción al taller cierra el miércoles 15 de abril. ¿Preguntas? Contactá a Agustín Corbat: acorbat@df.uba.ar Si no podes venir pero te interesa, no dudes en dejarnos tu mail en el formulario.
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Agustin Corbat @acorbat.bsky.social · 09/04/2026
¡Ey! 🔬 ¿Trabajas con imágenes de difícil análisis? ¿Microscopía? *Jornada de Análisis de Bioimágenes* 📅 22 de abril 📍 Pabellón 0+Inf, Aula 1306, FCEN-UBA Charlas, taller hands-on, consultoría con expertos y mucho networking. Gratis. 👉 Anotate acá (o déjanos tu mail): qrto.org/Cbcb3W
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Agustin Corbat @acorbat.bsky.social · 25/03/2026
🔬¡Atención si buscas apoyo o colaboración en análisis de bioimágenes! No dejes pasar este post. El foco está puesto totalmente en potenciar el #BioimageAnalysis, una pieza clave para avanzar en nuestros proyectos. Que el idioma no sea un impedimento; pregunta si puede ser en español si necesitas.🤝
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napari @napari.org · 11/03/2026
🔬 Registration is open for our pilot Introduction to napari Workshop! napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast. #napari #Python #ImageAnalysis #DataScience #OpenSource
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Agustin Corbat @acorbat.bsky.social · 25/02/2026
¿Te lo perdiste? Todo el material es Open Science y ya está en Zenodo: 📊 Slides: doi.org/10.5281/zeno... 💻 Material: doi.org/10.5281/zeno... ¡Gracias @khipu-ai.bsky.social por la invitación y hacer el evento posible! 🌎✨ #KhipuX #AI #Bioimaging
doi.org
Introduction to BioImage Analysis at KHIPUx 2026
4 hour theoretical and hand on workshop on introduction to bioimage analysios using Napari. Students will develop a quick workflow using napari assistant on the first half and apply CellPose on the se...
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Agustin Corbat @acorbat.bsky.social · 25/02/2026
También dicté el workshop "Introduction to Bioimage Analysis". Cubrimos desde teoría hasta práctica con ejemplos reales. El nivel de los participantes fue increíble; el futuro de la bioimagen está en muy buenas manos. 🔬🤖
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Agustin Corbat @acorbat.bsky.social · 25/02/2026
Fue un placer debatir sobre "Building regional capacity in AI" junto a Andrea Lara, David Brito y @hernanmn.bsky.social. Discutimos cómo potenciar el capital humano en Latam para cerrar brechas tecnológicas y de datos propios. ¡La nueva generación está más que lista para el desafío! 🚀
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Agustin Corbat @acorbat.bsky.social · 25/02/2026
¡Qué energía en Quito!🇪🇨 Regreso de KhipuX Quito 2026 inspirado por el inmenso talento joven en nuestra región. Bajo el lema "Democratizing AI in Bioimage and Medical Imaging", vi a estudiantes con una determinación admirable por liderar el futuro de la IA. 🧵👇 biodecodinglab.github.io/khipux-quito...
biodecodinglab.github.io
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging
Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
You can quickly go through the course material in this webpage too: bruvellu.github.io/light-sheet-...
bruvellu.github.io
🔬 Light-Sheet Image Analysis Workshop 2026
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
In the spirit of making all materials FAIR, we made them public on Zenodo. 🔓📑 Shoutout to Aníbal Vargas, @luzfuentealba.bsky.social, @charlottebuckley.bsky.social & the @lisium-chile.bsky.social crew for hosting us! doi.org/10.5281/zeno... #LightSheet #OpenScience #FAIR #Bioimaging
bruvellu.github.io
🔬 Light-Sheet Image Analysis Workshop 2026
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Empowering the next generation of bioimaging experts! 🌎 After many months crafting the Lightsheet Image Analysis Workshop 2026 with @bruvellu.bsky.social & @cuencam15.bsky.social. Seeing students finally crack their toughest project data on day 5 made every hour of prep worth it! 🧵👇
bruvellu.github.io
🔬 Light-Sheet Image Analysis Workshop 2026
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Thank you very much @hernanmn.bsky.social for taking care of the organization!!!
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Whether you’re in Quito or joining online, join us! Let’s make bioimage analysis accessible! 🤝🌎 📍 Hosted by UIDE 📅 Application Deadline: Jan 31 🔗 Register here: biodecodinglab.github.io/khipux-quito... See you there!(3/3) #KHIPUx #BioimageAnalysis #LatinAmerica #OpenScience #AI #MedicalImaging
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
This isn't just about the tech—it's about people. We’re bringing together students, researchers, and doctors to focus on: ✅ Ethical AI & Open Science ✅ Hands-on Bioimage workshops ✅ A collaborative hackathon 🧠💻 ✅ Regional impact for LatAm (2/3)
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Big news! 🚀 I’m excited to share that @khipu-ai.bsky.social is coming to Quito! 🇪🇨 biodecodinglab.github.io/khipux-quito... It will be a 3-day event dedicated to democratizing AI for Bioimage and Medical Imaging in Latin America. My goal is to help build a strong, supportive community. 🧵 (1/3)
biodecodinglab.github.io
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging
Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.
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Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 09/12/2025
I'm teaching Statistical Rethinking again starting Jan 2026. This time with live lectures, divided into Beginner and Experienced sections. Will be a lot more work for me, but I hope much better for students. I will record lectures & all will be found at this link: github.com/rmcelreath/s...
course schedule as a table. Available at the link in the post.
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Agustin Corbat @acorbat.bsky.social · 02/12/2025
¿Después de arduas sesiones de adquisición de imágenes te topaste con un problema aún más complicado en el análisis de tus imágenes? Vení a la última sesión de intercambio de experiencias de microscopía donde vamos a hablar de procesamiento y análisis de imágenes.
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Agustin Corbat @acorbat.bsky.social · 02/12/2025
📢 ¡La última sesión de IdEM On-Demand de 2025 organizada por @latambioimaging.bsky.social está a solo unos días! Bonus Track: Procesamiento y análisis de imágenes 📅 4 de diciembre, 12:00 GMT-3 🎙️Agustín Corbat, Hernán Morales 🎤 Andréia Lo Costa 🔗Registrate aquí: docs.google.com/forms/d/e/1F...
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Agustin Corbat @acorbat.bsky.social · 17/11/2025
For those who couldn't attend, or want a closer look, you can find the slides and poster here: zenodo.org/records/1763... and zenodo.org/records/1763....
zenodo.org
GloBIAS Presentation at Latin America BioImaging Meeting
Presentation about the Global BioImage Analysts' Society (GloBIAS) deliver at the LABI Meeting 2025 in Buenos Aires, Argentina.
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Agustin Corbat @acorbat.bsky.social · 17/11/2025
Thrilled to have presented @globias.bsky.social at the @latambioimaging.bsky.social Meeting last week! 🇦🇷🔬 I really enjoyed sharing our mission in both a lightning talk and with a poster. It was fantastic to connect with so many passionate bioimaging scientists! Let's keep building this community!
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Agustin Corbat @acorbat.bsky.social · 10/11/2025
Gemini was used to remove people from the picture.
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Agustin Corbat @acorbat.bsky.social · 10/11/2025
Wrapping up an amazing day at the @latambioimaging.bsky.social meeting! Honored to witness the presentation of the Honoris Causa degree to the legendary Carlos Bustamante. A truly inspiring way to conclude today's events. 👏 #Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
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Agustin Corbat @acorbat.bsky.social · 10/11/2025
Incredible kickoff by Lia Pietrasanta at the @latambioimaging.bsky.social meeting! Fantastic insights into microscopy in the region. Ready for an inspiring week! #Bioimaging #Microscopy #LABI
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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 20/10/2025
We just hit 10 workshops submitted, with almost two weeks to go! Help us get to 20 before the last-day frantic mad dash? Teach your favorite tool today!
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
Time to implement this entire model! Focusing on accessible training and an open-source stack to truly democratize high-end quantitative imaging here. Where should we start?
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
I would love to work as an imaging scientist! Gaining traction from the synergy between image acquisition, robust analysis, and system modeling is the most exciting frontier. It's the difference between being a step in a pipeline and understanding the experiment and system under study.
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
Individual labs have natural turnover (grads, post-docs). When that specialized knowledge walks out, who holds it? The facility staff. We are the necessary knowledge buffer, stabilizing expertise, protocols, and best practices for the long haul. Thank you @ahklemm.bsky.social for teaching me this!!
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
I presented my views on Facilities at the 🔬Democritizing #Microscopy in LatAm #BiologistsWorkshops! Facilities aren't just equipment hubs; they also hold the Institutional Memory. You can find the slides with notes 👇: doi.org/10.5281/zeno... And a summary below!🧵
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
Getting so many experts from across Latin America in one room was truly transformative. The conversations and connections made here are the foundation for a much stronger, collaborative future for #Bioimageing in our region.
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
Huge, heartfelt thanks to the @biologists.bsky.social for hosting the Democratizing Microscopy in Latin America workshop! #BiologistsWorkshops
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FocalPlane @focalplane.bsky.social · 15/10/2025
Last night we learnt about 'Microscopía Para Todos' from Licyel Paulas & 'Educaciencia' from Haydee Hernández Aviña, followed by a chance to play with their microscopes. Read more about Educaciencia: focalplane.biologists.com/2024/08/02/i... #BiologistsWorkshops
Group of people (all with big smiles!) testing out some low-cost microscopes.
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FocalPlane @focalplane.bsky.social · 12/10/2025
Our attendees receive a special welcome in Baños, including our Workshop organiser, Licyel Lenny Paulas Condori. Licyel set up ‘Microscopia Para Todos’, a STEAM outreach programme in Bolivia. Read more about Licyel & her project⤵️: focalplane.biologists.com/2023/04/25/a... #BiologistsWorkshops
People gathered in a wood and glass building with flowers and fruit in the foreground.People being served drinks in a sunny glass and wood building with lots of greenery in the background.
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Jean-Yves Tinevez @jytinevez.bsky.social · 13/10/2025
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS. I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social research.pasteur.fr/en/team/imag... ⬇️
research.pasteur.fr
Image Analysis Hub - Research
The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...
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FocalPlane @focalplane.bsky.social · 12/10/2025
The attendees are gathered, and the meeting room is ready. The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023. #BiologistsWorkshops focalplane.biologists.com/2023/07/25/a...
People smiling at the camera while sitting at a long dinner table.Room set up for a meeting
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