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Krishnaswamylab.org

@krishnaswamylab.bsky.social
2K followers 161 following 55 posts

We develop AI methods for science, particularly deep learning methods based on data geometry, topology and dynamics systems.

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Reposted by Krishnaswamylab.org
Yale Cancer Center @yalecancer.bsky.social · 27/02/2026
Led by @virusesimmunity.bsky.social and @krishnaswamylab.bsky.social, a team of Yale researchers developed a new tool #Immunostruct that combines multiple types of data to better support the development of personalized vaccines, including vaccines for #cancer. medicine.yale.edu/news-article...
medicine.yale.edu
Using Machine Learning to Develop Personalized Vaccines for Cancer
A new tool combines multiple types of data to better support the development of vaccines that target patient-specific pathology.
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 30/11/2025
We're @neuripsconf.bsky.social HiPoNet: neurips.cc/virtual/2025... HELM: Hyperbolic LLM openreview.net/forum?id=Rnb... Talk: hyperboliclearning.github.io/events/neuri... (Unireps/Neureps) Measure Before You Look openreview.net/forum?id=5Yn... (FM4LS) CellSpliceNet: openreview.net/forum?id=gVA...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 30/11/2025
We have 3 papers at TAG-DS @NeurIPSConf! DYMAG: Message Passing Using Dynamical-systems-based Waveforms (Oral) openreview.net/forum?id=WYi... A Graph Laplacian Eigenvector Pretraining Method for GNNs (Spotlight) openreview.net/forum?id=r5c... Reeb Graphs and Towers openreview.net/forum?id=U8I...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 07/11/2025
(1/N) Thrilled to share that our paper HiPoNet (High dimensional Point cloud Network) to be presented at NeurIPS 2025! HiPoNet treats an entire high-dimensional point cloud as a datapoint! It captures multi-scale geometry and topology of the cloud perform classification and regression tasks.
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 17/07/2025
Good morning from Vancouver! 🌞⛰️ We’re at #ICML2025 presenting at GenBio + MAS. Come chat with us about machine learning in biology! With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠 #ML #ComputationalBiology #ICML #Vancouver
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Reposted by Krishnaswamylab.org
Nature Biotechnology @natbiotech.nature.com · 01/07/2025
Defining and benchmarking open problems in single-cell analysis - @krishnaswamylab.bsky.social @fabiantheis.bsky.social bit.ly/4l8dsiF
bit.ly
Defining and benchmarking open problems in single-cell analysis - Nature Biotechnology
Nature Biotechnology - Defining and benchmarking open problems in single-cell analysis
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Reposted by Krishnaswamylab.org
Yale Kavli Institute for Neuroscience @kavliatyale.bsky.social · 27/05/2025
Mark your calendars 🗓️ for June 23 for a Kavli Awards Research in Progress!🧠 Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social‬), @lashaeneuroxp.bsky.social‬, Chen (@emonetlab.bsky.social)‬, Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social‬, Teefe, & ‪‪@haohy.bsky.social‬.
Flyer for the Kavli Awards Research in Progress of June 23 showing pictures of the speakers in the Kavli logo, with a schedule:

12:00 pm Dhananjay Bhaskar, PhD
2024 Kavli Postdoctoral Fellowship
Krishnaswamy & Colón-Ramos labs

12:20 pm LaShae Nicholson, PhD
2022 Kavli Award for Academic Diversity
Strittmatter lab

12:40 pm José Jaime Martínez-Magaña, PhD
2023 Kavli Award for Academic Diversity
Montalvo-Ortiz lab

1:00 pm Kevin Chen, PhD
2024 Kavli Postdoctoral Fellowship
Emonet & Clark labs

1:20 pm break

1:30 pm Aaron Kuan, PhD &
Joerg Bewersdorf, PhD
2024 Kavli Teams Award

1:50 pm Enock Teefe, MD
2023 Kavli Award for Academic Diversity
Pittenger & Fernandez labs

2:10 pm Hongyan Hao, PhD
2024 Kavli Postdoctoral Fellowship
Hammarlund & De Camilli labs
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Reposted by Krishnaswamylab.org
Erica Busch @elbusch.bsky.social · 04/04/2025
New preprint! Excited to share our latest work “Accelerated learning of a noninvasive human brain-computer interface via manifold geometry” ft. outstanding former undergraduate Chandra Fincke, @glajoie.bsky.social, @krishnaswamylab.bsky.social, and @wutsaiyale.bsky.social's Nick Turk-Browne 1/8
doi.org
Accelerated learning of a noninvasive human brain-computer interface via manifold geometry
Brain-computer interfaces (BCIs) promise to restore and enhance a wide range of human capabilities. However, a barrier to the adoption of BCIs is how long it can take users to learn to control them. W...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 26/01/2025
Excited to organize this! Should be an exciting event!!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 10/01/2025
Join us for an exciting session in @jointmath.bsky.social tomorrow! Here is our revised schedule!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 08/01/2025
We are at @jointmath.bsky.social Jan 8-11! 1/8: My talk at Topological Machine Learning I 1/8: Dhananjay Bhaskar at Contributed Paper session on Topology 1/11 join our special session on Mathematical and Computational Oncology Also check out @pseudomanifold.topology.rocks on 1/9!!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 25/12/2024
Merry Xmas!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 24/12/2024
Looking for talented postdocs in deep learning for neuroscience and neuromodulation with the Murat Gunel lab in neurosurgery (medicine.yale.edu/lab/gunel/)! Projects include brain signal decoding, dynamics modeling for neuromodulation ASD and other conditions. See: krishnaswamylab.org/join
krishnaswamylab.org
Join the Krishnaswamy Lab
We work on developing foundational mathematical <span class=
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Reposted by Krishnaswamylab.org
Nature Computational Science @natcomputsci.nature.com · 20/12/2024
📢Out now! @krishnaswamylab.bsky.social presents a graph signal processing method that learns gene representations from single-cell data. www.nature.com/articles/s43... 🔓https://rdcu.be/d4kPz
nature.com
Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science
This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 20/12/2024
(1/n) Excited to share our work on gene signal pattern analysis (GSPA)---our new method for analyzing gene expression over cellular manifolds! www.nature.com/articles/s43...
nature.com
Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science
This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 02/12/2024
Last day to apply for our @wutsaiyale.bsky.social open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378
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Reposted by Krishnaswamylab.org
logconference.bsky.social @logconference.bsky.social · 29/11/2024
🏆 Best Paper Award & Honorable Mention 🏆 Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉 📜 Your work inspires the entire graph and geometric ML community!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 28/11/2024
Happy thanksgiving!!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 28/11/2024
Up Mont Royal in the rain! For those of you who don’t know I’m on a one-semester sabbatical to Montreal!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 26/11/2024
Pictures from @logconference.bsky.social meetup Montreal!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 25/11/2024
If you're in Montreal tomorrow, catch us at the @logconference.bsky.social meetup @Mila_Quebec ! sites.google.com/view/log-202...
sites.google.com
LoG 2024 Montreal
About
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Reposted by Krishnaswamylab.org
logconference.bsky.social @logconference.bsky.social · 24/11/2024
✨EXCITING NEWS! We now have a Bluesky account!! AND registration for the 3rd Learning on Graphs conference is open 😊 It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱 forms.gle/eYiDCopJGUc8...
Screen capture of LoG website. The conference is Nov 26-29, 2024. See our website for more details: https://logconference.org/.
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 23/11/2024
Siddharth from our lab explaining protscape and scattering to CT Governor Ned Lamont and others at the AI summit hosted by @boehringer.bsky.social and BioCT arxiv.org/abs/2410.20317!!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 22/11/2024
(1/3) Our lab is at the New England Computer Vision Conference (NECV) right here in New Haven today! Chen Liu is presenting an oral on Imageflownet for longitudinal forecasting of medical images. arxiv.org/abs/2406.14794
arxiv.org
ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images
Advances in medical imaging technologies have enabled the collection of longitudinal images, which involve repeated scanning of the same patients over time, to monitor disease progression. However, pr...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 21/11/2024
(1/n) Intro...We work on mathematical machine learning and deep learning methods that use dynamics modeling, signal processing, geometry and topology to accelerate scientific discovery from data. Our key focus is representation learning of complex unlabelled data, a host of downstream tasks:
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 20/11/2024
Learning on graphs meetups this year!
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 19/11/2024
After the success of manifold learning in ML, what geometric object do you like next? Algebraic varieties come to mind recently :
link.springer.com
Learning algebraic varieties from samples - Revista Matemática Complutense
We seek to determine a real algebraic variety from a fixed finite subset of points. Existing methods are studied and new methods are developed. Our focus lies on aspects of topology and algebraic geom...
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 19/11/2024
Still new to Bluesky. Folks on both this and X, do you double post or do you post different things on each platform?
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 18/11/2024
If you are interested in math and its intersections with biology, machine learning and other fields, then check out ICERM (icerm.brown.edu)! Consider organizing a meeting there—they make it easy. Happy to be a new member of the scientific advisory board this year.
icerm.brown.edu
The Institute for Computational and Experimental Research in Mathematics
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Krishnaswamylab.org @krishnaswamylab.bsky.social · 18/11/2024
Krishnaswamy Lab is now in bluesky in addition to X.
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