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Reposted by MLSB (in San Diego + Copenhagen)

David Ryan Koes @dkoes.compstruct.org · 07/12/2025

Excited to be at the first independent @workshopmlsb.bsky.social

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Reposted by MLSB (in San Diego + Copenhagen)

Mile Sikic @msikic.bsky.social · 02/12/2025

I’ll also be giving a keynote on Dec 7 at @workshopmlsb.bsky.social (co-located with NeurIPS), speaking about the next wave of RNA structure prediction. 🔗 mlsb.io 2/4

mlsb.io

MLSB 2025 Workshop

Workshop on Machine Learning in Structural Biology co-located with NeurIPS 2025

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 24/11/2025

🧬 Attending EurIPS in Copenhagen? Come join us for ML×SBio Drinks! Join CradleBio & @adaptyv.bio for an evening of conversation at the intersection of machine learning and structural biology. 📍 Copenhagen | EurIPS week 🎟️ Space limited—RSVP to secure your spot

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 25/09/2025

Reminder that MLSB submissions for ✨BOTH✨ the Copenhagen and the San Diego MLSBs are due one week from now on October 1st 11:59pm AoE!

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Reposted by MLSB (in San Diego + Copenhagen)

jonathanziegler.bsky.social @jonathanziegler.bsky.social · 18/09/2025

EuroMLSB at EurIPS is confirmed and the submission deadline is set to Oct 1st. This is **earlier than the EurIPS-suggested workshop deadline** for a reason: we have a shared submission process with MLSB in SanDiego for which the deadline is now also extended to Oct 1st!

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 17/09/2025

🚨To accommodate the addition of EuroMLSB, we have extended the submission deadline to October 1, 2025 11:59pm AoE. Find information on paper guidelines at mlsb.io. Submissions will be made through CMT.

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 12/09/2025

You asked and we listened... @workshopmlsb.bsky.social is excited to be expanding to Copenhagen, DK at @euripsconf.bsky.social 🎉 Two workshops (San Diego & Copenhagen) will run concurrently to support broader attendance. You can indicate your location preference(s) in the submission portal💫

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 19/08/2025

📢The submission portal for MLSB 2025 is live! Submissions are due September 26, 2025 11:59 pm AoE. cmt3.research.microsoft.com/MLSB2025

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 28/07/2025

Stay tuned for details on the 6th edition of MLSB, officially happening this December in downtown San Diego, CA!

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Reposted by MLSB (in San Diego + Copenhagen)

Gina El Nesr @ginaelnesr.bsky.social · 07/07/2025

Unfortunately, the MLSB Workshop @ NeurIPS (@workshopmlsb.bsky.social) was rejected this year. Feedback from the deciding committee indicates it was a coin flip decision, with 283 proposals & a number related to “computational biology” More on the future of MLSB soon…

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 16/12/2024

Interested in turning your workshop paper into a publication? MLSB has partnered with PRX Life to start a new special collection! Submission is free and open access - Editorial: tinyurl.com/mlsbeditorial Collection: go.aps.org/4fWvbHe Submission: go.aps.org/3Znaux5

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 16/12/2024

Thank you to everyone who came to MLSB this year!! We are collecting feedback in a short 2 minute survey (and more data means maybe next year we'll train a new model... or just get a bigger room 😄) forms.gle/WHFNfvxVh3Qx...

docs.google.com

MLSB Post-Conference Survey

Thank you for taking a few minutes to complete this survey about your experience at MLSB 2024 @ NeurIPS! Your feedback is valuable and ensures that we run a smooth workshop each year.

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Time for the MLSB Panel 🎛️ We're welcoming @grocklin.bsky.social @noeliaferruz.bsky.social Erika Alden DeBenedictis @milot.bsky.social Jennifer Listgarten to the panel, hosted by the wonderful @hkws.bsky.social . 🔥

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up we're highlighting the results of the PINDER and PLINDER challenge.

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - contributed talk. HelixFlow, SE(3)–equivariant Full-atom Design of Peptides With Flow-matching Models Xuezhi Xie, Pedro A Valiente, Jisun Kim, Jin Sub Lee, Philip Kim

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up, contributed talk! FlowPacker: protein side-chain packing with torsional flow matching Jin Sub Lee, Philip Kim

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - invited speaker! Boltz-1: Democratizing Biomolecular Interaction Modeling @jeremywohlwend.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up, invited speaker! Challenges to metagenomic annotation with Foldseek and protein language models @milot.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Contributed Talk Improving Ab-Initio Cryo-EM Reconstruction with Semi-Amortized Pose Inference Shayan Shekarforoush @davelindell.bsky.social @marcusabrubaker.bsky.social David Fleet

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Contributed Talk! Generative modeling of protein ensembles guided by crystallographic electron densities Sai Advaith Maddipatla · Nadav Sellam · @sankethvedula.bsky.social · Ailie Marx · Alex Bronstein

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

We're back from the break! The next talk is an invited speaker. Protein-Protein Interactions in Synthetic Co-Evolution & Other Stories Jennifer Listgarten

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Invited Speaker! Learning the determinants of protein folding energy landscapes from large-scale experiments @grocklin.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Contributed Talk! Protein Language Model Fitness is a Matter of Preference Cade Gordon @amyxlu.bsky.social Pieter Abbeel

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Contributed Talk! Controllable All-Atom Generation of Protein Sequence and Structure from Sequence-Only Inputs @amyxlu.bsky.social Wilson Yang @kevinkaichuang.bsky.social Vladimir Gligorijevic @kyunghyuncho.bsky.social Richard Bonneau Pieter Abbeel @ncfrey.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Invited Speaker! How do we make the next PDB? Introducing Align’s Data Platform Erika Alden DeBenedictis

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Invited Speaker! Biomolecular Structure Prediction with AlphaFold3 Josh Abramson @deepmind.google.web.brid.gy John Jumper Demis Hassabis and AlphaFold3 Team

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Next up - Contributed Talk! The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling Andre Cornman @microyunha.bsky.social Jacob West-Roberts @martinberan.bsky.social @sokrypton.org @simrouxvirus.bsky.social @apcamargo.bsky.social @milot.bsky.social

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

First up! @noeliaferruz.bsky.social Tailored protein design with conditional language models

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 15/12/2024

Starting in 5! Join us for an exciting day of invited talks, posters, and a panel with our invited speakers. Schedule: mlsb.io Room: East Building Meeting Rooms 11-12 (2nd floor)

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Reposted by MLSB (in San Diego + Copenhagen)

NeurIPS Conference @neuripsconf.bsky.social · 22/11/2024

NeurIPS Conference is now Live on Bluesky! -NeurIPS2024 Communication Chairs

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MLSB (in San Diego + Copenhagen) @workshopmlsb.bsky.social · 22/11/2024

We are delighted to announce the new “Machine Learning in Structural Biology” collection in PRX Life Read the guest editorial below: @hkws.bsky.social @ginaelnesr.bsky.social @gcorso.bsky.social journals.aps.org/prxlife/abst...

journals.aps.org

Editorial: Machine Learning for Structural Biology

PRX Life 2, 040001 (2024)

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Reposted by MLSB (in San Diego + Copenhagen)

Gina El Nesr @ginaelnesr.bsky.social · 22/11/2024

what a pleasure to have been a guest editor alongside @hkws.bsky.social and @gcorso.bsky.social. We are really excited by this new collection showcasing ML in structural biology!

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Reposted by MLSB (in San Diego + Copenhagen)

Hannah Wayment-Steele @hkws.bsky.social · 22/11/2024

This past year, the organizers at @workshopmlsb.bsky.social partnered with PRX Life to create a special collection focused on the topic of "machine learning in structural biology". Was a pleasure to work together trying to create a venue for workshop papers! journals.aps.org/prxlife/abst...

journals.aps.org

Editorial: Machine Learning for Structural Biology

PRX Life 2, 040001 (2024)

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