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Martin Wilkes

@wilkesma.bsky.social
436 followers 712 following 8 posts

Senior Lecturer in Ecology, University of Essex www.martinwilkes.co.uk (views are my own)

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Reposted by Martin Wilkes
Emil Hvitfeldt @emilhvitfeldt.bsky.social · 24/04/2025
{prismatic} has a `best_contrast()` function that should do the trick emilhvitfeldt.github.io/prismatic/re...
emilhvitfeldt.github.io
Find highest contrast color — best_contrast
best_contrast() finds the color in y with the highest contrast to the color x.
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Reposted by Martin Wilkes
Tom Cameron @ecoevoenviro.bsky.social · 22/04/2025
PhD AVAILABLE on #Wildlife #harvest and #management policy in the UK - studentship only for Home/UK resident status candidates - Life and social sciences collaboration - deadline 28th May 2025 - get in touch #birds #people #policy tinyurl.com/3vxkzad9
tinyurl.com
PhD Studentship: Transitions to Sustainable Wildlife Harvest: Evidence Based Management and The Social Licence to Hunt at University of Essex
jobs.ac.uk are now advertising a PhD Studentship: Transitions to Sustainable Wildlife Harvest: Evidence Based Management and The Social Licence to Hunt. Discover exciting PhD opportunities on jobs.ac....
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Reposted by Martin Wilkes
Andrew Heiss @andrew.heiss.phd · 18/04/2025
Thing I just learned in #rstats: unz() lets you connect to a .zip and load files from inside it without actually unzipping it (great for a file I'm working with that's 30 MB zipped and 1+ GB unzipped, with multiple CSVs in it)
# unz() lets you connect to a .zip and treat it like a mini file system, 
# and you can load files from inside it
one_zipped_csv_among_others <- readr::read_csv(
  unz("lotsa_zipped_csvs.zip"), "one_csv.csv"
)

# readr::read_csv() can read a .zip with a single CSV in it
one_zipped_csv <- readr::read_csv("big_zipped_file.zip")
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Alex Coppock @aecoppock.bsky.social · 16/04/2025
New visualization tool alert! The vayr package version 1.0.0 is now on CRAN. It contains position adjustments for ggplot2 that help with overplotting in pleasing ways. My favorite is position_sunflower(). - install.packages("vayr") - alexandercoppock.com/vayr #rstats #ggplot2 #dataviz
position_jitter()position_jitter_ellipse()position_sunflower()position_circlepack()
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Leverhulme Trust @leverhulme.ac.uk · 17/04/2025
Join @davidolusoga.bsky.social and Philip Leverhulme Prize winner @sadiahqureshi.bsky.social in conversation this June as they explore the themes of Qureshi’s powerful new book, Vanished: An Unnatural History of Extinction. Buy your tickets here: www.eventbrite.co.uk/e/sadiah-qur...
eventbrite.co.uk
Sadiah Qureshi in conversation with David Olusoga about extinction
Manchester Histories presents an 'In Conversation' event marking the launch of 'Vanished: An Unnatural History of Extinction' (Penguin 2025)
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Angela Chuang @arachnonaut.bsky.social · 10/04/2025
Had a lot of fun reviewing the #boardgame #Finspan w/ @oschwery.bsky.social for @nature.com! This fish-themed game harnesses some of my favorite aspects of #Wingspan, blending stunning art & trophic ecology with fast-paced play. rdcu.be/eg2Dx #Finspan by @stonemaiergames.com
The cover of a board game review in the "Books and Arts" section of the science journal, Nature. The page is mostly taken up by a large color photo of the game board, which features detailed pictures of fish cards. The title of the review is "This board game lets you dip into marine ecology".
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Simon Kuestenmacher @simongerman600.bsky.social · 29/03/2025
This is fantastic! This website allows you to watch TV stations from around the world. I just watched 2 minutes of Afghan volleyball. All the small regional TV stations from Germany are here too. Spread the word! Source: tv.garden
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Andrew Heiss @andrew.heiss.phd · 20/03/2025
I’ve long used FiveThirtyEight’s interactive “Hack Your Way To Scientific Glory” to illustrate the idea of p-hacking when I teach statistics. But ABC/Disney killed the site earlier this month :( So I made my own with #rstats and Observable and #QuartoPub ! stats.andrewheiss.com/hack-your-way/
Screenshot of the linked Quarto website, with input checkboxes to change different conditions for a regression model that predicts economic performance based on US political party, with a reported p-value
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Tamlin Pavelsky @globalhydro.bsky.social · 19/03/2025
Do you work on lakes globally? Check out what is, to my mind, the most complete global database of lakes (~6M) and associated attributes, newly published in WRR. Also the basis for SWOT lake data. agupubs.onlinelibrary.wiley.com/doi/full/10....
Map of global lake distribution, colored by the number of SWOT overpasses per 21 day cycle. There are many lakes with a high number of SWOT overpasses at high northern latitudes, but there are also tens of thousands to more than a million lakes on every continent. Lakes are graphed by latitude and longitude on the edges of the figure.
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Chris Hassall @katatrepsis.bsky.social · 18/03/2025
🔎 🌍 🧪 How reliable are biodiversity trend assessments? A new paper in @ecography.bsky.social led by the amazing @wilkesma.bsky.social, reveals hidden sources of uncertainty in monitoring data and modeling choices that can dramatically alter conservation conclusions… (1/5) 🔗 bit.ly/4ibhAgq
nsojournals.onlinelibrary.wiley.com
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Martin Wilkes @wilkesma.bsky.social · 11/03/2025
📢 Biodiversity scientists 📢 Ever wondered how the decisions we make during biodiversity trend assessment affects reported trends? Our new @ecography.bsky.social paper shows how we can mitigate biases and be more transparent about trend uncertainty nsojournals.onlinelibrary.wiley.com/doi/full/10....
nsojournals.onlinelibrary.wiley.com
Revealing hidden sources of uncertainty in biodiversity trend assessments
Idiosyncratic decisions during the biodiversity trend assessment process may limit reproducibility, whilst ‘hidden' uncertainty due to collection bias, taxonomic incompleteness, and variable taxonomi...
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Martin Wilkes @wilkesma.bsky.social · 03/02/2025
More opportunities for postgraduateresearch via the @leverhulme.bsky.social #SustainableTransitions programme at University of Essex. Fully funded MSc followed by a PhD. Open to UK students meeting specific eligibility criteria. Closing 18 April. See www.essex.ac.uk/scholarships... for more details
essex.ac.uk
Sustainable Transitions Masters plus PhD | University of Essex
The University of Essex is offering three Masters plus PhD research scholarships on our Sustainable Transitions doctoral training programme for Home / UK applicants from underrepresented groups.
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Martin Wilkes @wilkesma.bsky.social · 26/01/2025
Just two weeks left apply for these opportunities for unique interdisciplinary PhD research on #biodiversity funded by @leverhulme.bsky.social. Apply by 7th February!
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Emil Malta 🇬🇱 @emilmalta.bsky.social · 09/01/2025
Messing around with shinylive. For real, how are people not freaking out?!! Zero hosting costs, no online requirements, no installation required, nothing not a damn thing. #rstats #databs
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Michael Kearney @ecophys.bsky.social · 14/12/2024
I'm happy to use my first #Bluesky post to announce that there's now a shiny app for the endotherm model of the #NicheMapR package bioforecasts.science.unimelb.edu.au/app_direct/e...
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Jonathan Lenoir 🌳🌲🌴 @jonlen.bsky.social · 17/12/2024
Everything you ever wanted to know to get started on #microclimate is compiled there ⬇️ in 🔟 guidelines 🤓 Unpack each 1️⃣ to select the right variable, the most relevant spatiotemporal scale, the best sampling design & to tailor your analyses to your study question 🧪🌐🍁 shorturl.at/VYP8f
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Anthony Ricciardi @ecoinvasions.bsky.social · 15/12/2024
By predicting the extent of invasion in the absence of timely interventions, the authors found that management measures were effective in limiting the spread of the yellow-legged hornet in Europe. #bioinvasions besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
Predicting the spatio‐temporal dynamics of biological invasions: Have rapid responses in Europe limited the spread of the yellow‐legged hornet (Vespa velutina nigrithorax)?
By predicting the extent of a biological invasion in the absence of timely interventions and comparing this to the current distribution of the yellow-legged hornet, we found that management measures ...
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Jan Broder Engler @jbengler.de · 10/12/2024
Stunning free #science vector art for your next poster, paper or talk 🤩 The #NIH has compiled over 2,000 illustrations including swatches and pattern brushes bioart.niaid.nih.gov #rstats #dataviz #phd #illustration
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Tom Prater @tomoprater.carbonbrief.org · 09/12/2024
This ridgeline plot and the unconventional use of shading from white to blue to indicate sea ice loss is great. It also reinforces the impression of a dense ice pack breaking up. Chart by @janatausch.bsky.social www.ft.com/content/63fb... #dataviz
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Jonathan Lenoir 🌳🌲🌴 @jonlen.bsky.social · 03/12/2024
Exotic plants are better at hitchhiking upslope 🏔 than natives ⬇️ A very important result which supports former findings on exotic plants shifting and expanding their elevation ranges upslope at a rapid pace #RangeX #BioShifts 🧪🌐🌏🍁 shorturl.at/h846l
shorturl.at
Rapid upwards spread of non-native plants in mountains across continents - Nature Ecology & Evolution
The authors resurveyed a previously sampled set of mountain transects on five continents, showing that the ranges of non-native plant species have shifted upslope in most locations in just 5–10 years.
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Jonathan Myers @jamyersecology.bsky.social · 04/12/2024
Happy to share a new paper—led by Justin Baldwin—exploring how avian dispersal ability shapes species-area relationships on islands worldwide 🐦‍⬛ 🏝️ 🌐 (1/2) onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Avian Dispersal Ability Shapes Species–Area Relationships on Islands Worldwide
We show how variation in dispersal ability in island birds worldwide explains variation in a canonical biodiversity pattern—the island species–area relationship (ISAR). Dispersal had scale-dependent ...
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Julian Schrader @julianschrader.bsky.social · 04/12/2024
Celebrating @altmetric.com with this repost! www.nature.com/articles/s41... Islands harbor 1/3 of the world’s #plant species, including 63,280 endemics—making them #biodiversity hotspots. Yet, only 6% meet global #conservation goals. @natureportfolio.bsky.social #nature #science #research
nature.com
Islands are key for protecting the world’s plant endemism - Nature
A standardized checklist of all known vascular plants shows the distribution of island native and endemic species, identifies their conservation status and highlights the need for actions to conserve ...
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Jonathan Lenoir 🌳🌲🌴 @jonlen.bsky.social · 05/12/2024
The new #Grime #Review is out ⬇️ See our paper on embracing plant-plant interactions to improve predictions of plant species redistribution 🌲🌳🌴🌱🍀🌾🌼🌸 🧪🌐🌏🍁 @journalofecology.bsky.social shorturl.at/i763n
shorturl.at
Embracing plant–plant interactions—Rethinking predictions of species range shifts
Concept summary and flowchart of data to calculate a Plant–plant Interaction Index (PII) map Here, the PII is mapped for the forest herb Geum urbanum based on the realized impact of the competitive g...
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Nicolas Mouquet @nmouquet.bsky.social · 04/12/2024
The socioeconomic and environmental niches of world terrestrial and marine #ProtectedAreas see our last study in Nat. Commun. 👉 www.nature.com/articles/s41... 🔑 We highlight ‘potential’ versus ‘unrealistic’ conservation gains on land and sea to meet global conservation targets. 🧪🌐🌍🦤🦑
Potential and unrealistic conservation gains for terrestrial and marine
vertebrates. We define as low vs. high conservation gains (x-axis) the bottom vs.
top-ranked (10%) unprotected areas for the conservation of vertebrates according
to themaximisation of species range size coverage on land (a birds and mammals)
and sea (b fish).We define aspotential vs. unrealistic conservation gains (y-axis), the
unprotected areas being the most likely (‘low-hanging fruits’) vs. unlikely (‘highhanging
fruits’) to be protected according to their social-environmental context.
On global maps, established protected areas are in green, while we only represent
the potential vs. unrealistic high conservation gains on land (c) and sea (d). The
gradient of colours corresponds to the relative likelihood that these unprotected
areas are turned into protected areas according to the 14 social-environmental
factors (Tables 1 and 2) and Random Forest models (see ‘Methods’). So, potential
high conservation gains are in dark blue,while unrealistic high gains are in dark red.
See Fig. 5 for the average relative likelihood of PA establishment per country on
land and sea. These patterns could be biased by missing PAs in theWord Database
on Protected Areas. Source data and codes are provided at https://doi.org/10.5281/
zenodo.11183846.
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Fern Hames @fernhames.bsky.social · 05/12/2024
The power of sharing authentic stories, from trusted messengers, and including the framing of future generations 🌿: theconversation.com/how-sharing-...
theconversation.com
How sharing stories about river restoration can inspire others to take care of waterways
Reversing damage to waterways requires sustained effort over time. Storytelling that emphasises inter-generational goals cultivates patience and resilience within communities.
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milos makes maps @milos-makes-maps.bsky.social · 04/12/2024
The founder of Statistics Globe that helps you master #rstats is on BlueSky now. Give Joachim a follow ⤵️
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Jarrett Byrnes @jebyrnes.bsky.social · 04/12/2024
New (ok, not new, since 1953) distribution for count data just dropped! Modeling over/underdispersed count data with the Good Distribution - yehaw good.glm() besjournals.onlinelibrary.wiley.com/doi/full/10.... #rstats 🌍
besjournals.onlinelibrary.wiley.com
good: An R package for modelling count data
Organisms-related data often appear as counts. The Poisson distribution is the most popular choice for modelling count data, but this distribution assumes equidispersion, which is usually not sati...
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Nicola Rennie @nrennie.bsky.social · 04/12/2024
🎉 The {messy} package is now available on CRAN! 🎉 Read the introductory blog post here: nrennie.rbind.io/blog/introdu... #RStats #StatsEd #DataScience
nrennie.rbind.io
Introducing the {messy} package | Nicola Rennie
The {messy} R package takes a clean dataset, and randomly adds mess to create data more similar to that which you'd find in the real world. This is an easy way for educators to create data sets that g...
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Ecography @ecography.bsky.social · 04/12/2024
Achieving higher standards in species distribution modeling by leveraging the diversity of available software nsojournals.onlinelibrary.wiley.com… #Software #Code #Rstats
Achieving higher standards in species distribution modeling by leveraging the diversity of available software https://nsojournals.onlinelibrary.wiley.com/doi/10.1111/ecog.07346 #Software #Code #RstatsAchieving higher standards in species distribution modeling by leveraging the diversity of available software https://nsojournals.onlinelibrary.wiley.com/doi/10.1111/ecog.07346 #Software #Code #Rstats
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Erika C. Freeman @ecfreewoman.bsky.social · 04/12/2024
Things are changing and as academics, we will have to adapt. How can we strategically position ourselves to leverage these new tools to ensure our work continues to me maximally valuable to our own community and society? 🧪🌎🌐#WetSci www.pnas.org/doi/full/10....
pnas.org
Could ChatGPT get an engineering degree? Evaluating higher education vulnerability to AI assistants | PNAS
AI assistants, such as ChatGPT, are being increasingly used by students in higher education institutions. While these tools provide opportunities f...
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WSL-Eawag Biodiversity Center @wslbiodiversity.bsky.social · 25/11/2024
We look forward to our next hybrid seminar with Annegret Larsen (WUR) to learn more about her interdisciplinary research into natural river systems and how it supports restoration efforts and her case studies in Europe, Asia, and South America. Join us! biodiversitycenter.wsl.ch/en/events/de...
A visual for the WSL Biodiversity Seminar Series featuring Annegret Larsen of Wageningen University. Talk: Towards a Better Understanding of Natural River Systems in an Age of Restoration. Scheduled for 27 November 2024, 11:00–12:00. Includes her portrait with a river background.
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Martin Wilkes @wilkesma.bsky.social · 25/11/2024
Two unique opportunities for fully funded interdisciplinary PhD research on #biodiversity #conservation @Uni_of_Essex, blending #ecology with #sociology and #business as part of the @leverhulme.bsky.social Sustainable Transitions programme jobs.ac.uk/job/DKT611/p... jobs.ac.uk/job/DKT503/p...
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