Reposted by Vojtěch ČermákbioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 24/07/20265' Complementarity-Mediated End Joining (5'CMEJ) DNA repair www.biorxiv.org/content/10.64898/20… 012
Reposted by Vojtěch ČermákClément Lafon Placette @plantreproevo.bsky.social · 24/07/2026What a systems view can tell us about genomic imprinting in plants! Happy collab with @vojta-ce.bsky.social @omeriltas.bsky.social @apecinka.bsky.social @susnatas.bsky.social @kovacik.bsky.social A. Přibylová and led by Trezalka Budinsky www.biorxiv.org/content/10.6...biorxiv.orgImprinted regulatory networks reveal the molecular cross-talk between paternal and maternal genomes in the endosperm of Arabidopsis arenosaImprinted genes do not act alone to shape seed development, but as a complex network - just like any other gene. Yet, the molecular context in which they are embedded, i.e. their gene network, remains... 1168
Reposted by Vojtěch ČermákPhil Ewels @ewels.bsky.social · 13/05/2026My talk from the #NextflowSummit is on YouTube! youtu.be/LbA_d4oOpDQ I talked about my recent odyssey with AI-written software, including #RustQC, rewrites.bio, Trim Galore and a FastQC rust rewrite 👀 This was honestly one of my favourite talks to date. I hope it's interesting for folks 😊youtu.bePhil Ewels: Bioinformatics in the agentic age: Practical tips learnt from RustQC and rewrites.bioYouTube video by Nextflow 163
Reposted by Vojtěch ČermákTomáš Kašpar @tomas-kaspar.bsky.social · 31/03/2026We are thrilled to share our latest work uncovering a completely novel pathway in plants, where Pol II elongation factor SPT6L recruits AGO4 to guide mRNA methylation 🌿🔬 www.biorxiv.org/content/10.6... #PlantSci #Epigenetics #RNA #Preprint #epitranscriptomicsbiorxiv.org 1227
Vojtěch Čermák @vojta-ce.bsky.social · 01/04/2026Our new preprint on how in plants ARGONAUT 4 controls RNA cytosine methylation (yes RNA!) which then prevents premature transcription termination #PlantScience #Epitranscriptome #siRNAs 0133
Reposted by Vojtěch ČermákClément Lafon Placette @plantreproevo.bsky.social · 12/05/2025Hello BlueSky! Super excited that this work is out thanks to a great team work with Nélida Padilla-Garcia as lead author! We looked at what shaped the purging and fixation of TEs in populations across Arabidopsis lyrata species range. Short answer: the usual suspects, but also genomic imprinting! 276
Reposted by Vojtěch ČermákMartin Kovacik @kovacik.bsky.social · 17/02/2025We would like to invite you to the Czech Plant Nucleus Workshop 2025. Prague, Czech Republic, from May 26 to 27, 2025. Topic: Structural and functional genomics, Genome stability, Epigenetics, Reproduction, Genome editing. See more at: olomouc.ueb.cas.cz/cpnw #CPNW2025 143
