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Nils Trost

@trostnils.bsky.social
36 followers 39 following 5 posts
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Lena Kutscher @lenakutscher.bsky.social · 10/02/2026
Excited to share our preprint on our new multi-omic atlas of human hindbrain development. Led by postdoc Piyush Joshi, in collaboration with @kaessmannlab.bsky.social and Pfister labs, our atlas represents the first comprehensive view of human hindbrain development. www.biorxiv.org/content/10.6...
Brain with puzzle overlay to show that our study provides missing pieces of the puzzle of human brain development by delivering the most comprehensive picture of hindbrain development to date. We have strived to go beyond just another multi-omics atlas to gain deep insights by:
1. Meticulously annotating cell clusters
2. Extracting regulatory programs in terms of coordinated gene sets and accessible regulatory elements
3. Using deep learning to identify regulatory syntax
4. Resolving context-specific TF activity
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Universität Heidelberg @uniheidelberg.bsky.social · 14/11/2025
Computerlinguistin und Geoinformatiker mit „KlarText-Preis“ ausgezeichnet – Hervorragende Wissenschaftskommunikation: Letitia Parcalabescu und Steffen Knoblauch präsentieren Ergebnisse ihrer Doktorarbeiten in allgemeinverständlicher Form www.uni-heidelberg.de/de/newsroom/... #wisskomm
Die Computerlinguistin Dr. Letitia Parcalabescu und der Geoinformatiker Dr. Steffen Knoblauch
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 02/11/2025
LLMs can memorize even a phone number seen once in training.🔒 Google’s VaultGemma fixes that, being the first open-weight LLM trained from scratch with differential privacy, so rare secrets leave no trace. ☕ new video explaining Differential Privacy through VaultGemma 👇 🎥 youtu.be/UwX5zzjwb_g
youtu.be
What's up with Google's new VaultGemma model? – Differential Privacy explained
YouTube video by AI Coffee Break with Letitia
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 19/10/2025
We explain diffusion models and flow-matching models side by side. Flow-Matching models are the new generation of AI image generators that are quickly replacing diffusion models. They take everything diffusion did well, but make it faster, smoother, and deterministic. 🎥 youtu.be/firXjwZ_6KI
youtu.be
Diffusion Models and Flow-Matching explained side by side
YouTube video by AI Coffee Break with Letitia
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Kaessmann Lab @kaessmannlab.bsky.social · 16/10/2025
Did transposable elements shape brain evolution — and if so, which ones, and in which cell states and lineages? Led by @tyamadat.bsky.social, we explored this question in cerebellum development using sequence-based deep learning models! www.biorxiv.org/content/10.1...
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Kaessmann Lab @kaessmannlab.bsky.social · 15/10/2025
We are thrilled to share our new preprint entitled “The origin and molecular evolution of the mammalian liver cell architecture” www.biorxiv.org/content/10.1...
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 21/09/2025
Ever wondered how Energy-Based Models (EBMs) work and how they differ from normal neural networks? ☕️ We go over EBMs and then dive into the Energy-Based Transformers paper to make LLMs that refine guesses, self-verify, and could adapt compute to problem difficulty.
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 14/09/2025
The world’s largest NLP conference with almost 2,000 papers presented, ACL 2025 just took place in Vienna! 🎓✨ Here is a quick snapshot of the event via a short interview with one of the authors whose work caught my attention. 🎥 Watch: youtu.be/GBISWggsQOA
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Kaessmann Lab @kaessmannlab.bsky.social · 11/09/2025
👇 !!!
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 03/08/2025
How do LLMs pick the next word? They don’t choose words directly: they only output word probabilities. 📊 Greedy decoding, top-k, top-p, min-p are methods that turn these probabilities into actual text.
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 27/07/2025
Excited to be at ACL 2025 in Vienna this week 🇦🇹 #ACL2025 I’m always up for a chat about reasoning models, NLE faithfulness, synthetic data generation, or the joys and challenges of explaining AI on YouTube. If you're around, let’s connect!
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Kaessmann Lab @kaessmannlab.bsky.social · 16/07/2025
Our study on a male-essential microRNA and the evolution of other dosage compensation mechanisms in birds is now out in Nature! www.nature.com/articles/s41...
nature.com
A male-essential miRNA is key for avian sex chromosome dosage compensation - Nature
Birds have evolved a unique sex chromosome dosage compensation mechanism involving the male-biased microRNA (miR-2954), which is essential for male survival by regulating the expression of dosage-sens...
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 07/07/2025
📅 Looking forward to the discussion and to learning from fellow panelists and participants. If you're around Heidelberg, join us! www.marsilius-kolleg.uni-heidelberg.de/de/dancing-w...
marsilius-kolleg.uni-heidelberg.de
Dancing with Right & Wrong? - Marsilius-Kolleg
An interdisciplinary symposium on knowing, doing and not being sure
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 07/07/2025
🤖 Can we trust AI in science? I'm excited to be speaking at the final event of the Young Marsilius Fellows 2025, themed "Dancing with Right & Wrong?" – a title that feels increasingly relevant these days. I'll be joining a panel on "(How) can we trust AI in science?" to discuss questions like:
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Nils Trost @trostnils.bsky.social · 20/06/2025
I'm very excited to finally share the main work of my PhD! We explored the evolutionary dynamics of gene regulation and expression during gonad development in primates. We cover among others: X chromosome dynamics (incl. in a developing XXY testis), gene regulatory networks and cell type evolution.
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 31/05/2025
Excited to share that I’ll be joining the Summer School “AI and Human Values” this September at the Marsilius-Kolleg of Heidelberg University as a speaker. I'll be giving an introduction to how large language models actually work—before the summer school dives deeper into broader implications.
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 18/05/2025
Long videos are a nightmare for language models—too many tokens, slow inference. ☠️ We explain STORM ⛈️, a new architecture that improves long video LLMs using Mamba layers and token compression. Reaches better accuracy than GPT-4o on benchmarks and up to 8× more efficiency. 📺 youtu.be/uMk3VN4S8TQ
youtu.be
Token-Efficient Long Video Understanding for Multimodal LLMs | Paper explained
YouTube video by AI Coffee Break with Letitia
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Karly Kingsley @karlykingsley.bsky.social · 16/05/2025
🎯
We're about 3 lines deep into the "first they came for" poem.
It's not a very long poem, folks
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Kaessmann Lab @kaessmannlab.bsky.social · 07/04/2025
A great article highlighting the broader implications of the three parallel recent papers from our group and our wonderful colleagues in Spain and Belgium...
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 23/03/2025
Just say “Wait…” – and your LLM gets smarter?! We explain how just 1,000 training examples + a tiny trick at inference time = o1-preview level reasoning. No RL, no massive data needed. 🎥 Watch now → youtu.be/XuH2QTAC5yI
youtu.be
s1: Simple test-time scaling: Just “wait…” + 1,000 training examples? | PAPER EXPLAINED
YouTube video by AI Coffee Break with Letitia
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Kaessmann Lab @kaessmannlab.bsky.social · 16/03/2025
How does gene regulation shape brain evolution? Our new preprint dives into this question in the context of mammalian cerebellum development! rb.gy/dbcxjz Led by @ioansarr.bsky.social, @marisepp.bsky.social and @tyamadat.bsky.social, in collaboration with @steinaerts.bsky.social
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Kaessmann Lab @kaessmannlab.bsky.social · 13/02/2025
So excited to announce that our study on the development and evolution of pallial cell types and structures in birds, led by @bassi-z.bsky.social, is now out in @science.org! www.science.org/doi/10.1126/...
science.org
Developmental origins and evolution of pallial cell types and structures in birds
Innovations in the pallium likely facilitated the evolution of advanced cognitive abilities in birds. We therefore scrutinized its cellular composition and evolution using cell type atlases from chick...
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 19/01/2025
An educational and a bit historical deep dive into LLM research. 💡Learn what breakthroughs since 2017 paved the way for AI like ChatGPT (it wasn't overnight). We go through: * Transformers * Prompting * Human Feedback, etc. and break it all down for you! 👇 📺 youtu.be/BprirYymXrg
youtu.be
LLMs Explained: A Deep Dive into Transformers, Prompts, and Human Feedback
YouTube video by AI Coffee Break with Letitia
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aicoffeebreak.bsky.social @aicoffeebreak.bsky.social · 08/12/2024
New video about: REPA (Representation Alignment), a clever trick to align diffusion transformers’ representations with pretrained transformers like DINOv2. It accelerates training and improves the diff. model’s ability to do things other than image generation (like image classification).
youtu.be
REPA Representation Alignment for Generation: Training Diffusion Transformers Is Easier Than You ...
YouTube video by AI Coffee Break with Letitia
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