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Christian Meesters

@rupdecat.fediscience.org.ap.brid.gy
88 followers 3 following 842 posts

PhD in Biophysics, Postdoc in Genetic Epidemiology, Detour in Industry, Currently: Computational Scientist (Life Science Support) HPC (NHR, University of Mainz (on […] 🌉 bridged from ⁂ fediscience.org/@rupdecat, follow @ap.brid.gy to interact

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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 03/10/2026
@egonw I don't get it to work 🤷‍♂️ . But it is not super important, anyway. Need to pack for a short holiday now.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 03/10/2026
@egonw ah, this query requires a personal wiki data item! Overlooked this completely. Well, then ... 🤷‍♂️
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 03/10/2026
@lavaeolus Toi, toi, toi! FYI fediscience.org/@rupdecat/117371188…
fediscience.org
Christian Meesters (@rupdecat@fediscience.org)
Going offline for a week. The last few days were overwhelming, and I will be enjoying a short autumn holiday. Or at least, I hope it will be autumn-like. Never mind. No course planning, bug fixing, bureaucracy, etc. 🌊 & 🌳 🌲 & 📖 for me! #academichatter
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 03/10/2026
apparently, 70 of my co-authors are on Mastodon (qlever.dev/wikidata/7dwB9n), out of 749 co-authors with items in Wikidata (qlever.dev/wikidata/PQ58OM) I wonder if I am following all of them
qlever.dev
The QLever SPARQL engine: fast, scalable, with autocompletion and text search
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 03/10/2026
@egonw wow! Perhaps your collaborators are more likely to be found on Mastodon? Unfortunately, the same query replaced with my ORCID gives zero output. Although I do not know how high the number should be, it should definitively be > 0.
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Andreas Wagner @anwagnerdreas.hcommons.social.ap.brid.gy · 03/10/2026
Das @bistummainz sucht übrigens eine Person (m/w/d, Vollzeit, unbefristet, angelehnt an TVöD EG 12) als Klimaschutzmanager:in und Umweltbeauftragte:n. Bewerbungsschluss ist am 23.10.2026. Ziel ist es, den Beitrag des Bistums zur Bewahrung der Schöpfung konkret und messbar zu stärken […]
hcommons.social
Original post on hcommons.social
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Egon Willighagen @egonw.social.edu.nl.ap.brid.gy · 03/10/2026
new blog: "New paper: "ToxTempAssistant: using large language models to standardise cell-based toxicological test method descriptions"" […] [Original post on social.edu.nl]
Screenshot of the acceptance note of the article, as archived on Zenodo by the journal. It shows the publisher code of the submission ("TEBT-2025-0014") and below that a colored table with blue, yellow, and green rows, with various bits of information, including the submission title, handling editor, number of reviewers (3), preprint DOI, evaluation stage, and final recommentation ("Accept").
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 02/10/2026
Die drei im RMU-Verband (Rhein-Main-Universitäten) zusammen bei der Exzellenzinitiative angetretenen Universitäten aus #Mainz, #Frankfurt und #Darmstadt erhalten den "Exzellenzstatus" zugewiesen […]
fediscience.org
Original post on fediscience.org
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 02/10/2026
Oh. By the way ... poster and talk were modestly successful, measured in feedback and new users.
yours truefully giving a talk
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 02/10/2026
Going offline for week. The last few days were overwhelming, and I will be enjoying a short autumn holiday. Or at least, I hope it will be autumn-like. Never mind. No course planning, bug fixing, bureaucracy, etc. 🌊 & 🌳 🌲 & 📖 for me! #academichatter
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 02/10/2026
@tomkalei zurück zu einfacher Codecompletion. Keine semantischen Vorschläge mehr.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 02/10/2026
@tschfflr @rstockm So eine Welle wünsche ich mir für das nächste Mal, wo eine nächste Brorhilker oder sonst jemand von einer Kampagne heimgesucht wird auch.
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Björn Brembs @brembs.mastodon.social.ap.brid.gy · 01/10/2026
Join us in #zurich on October 21, at 3.30pm if you want to learn more on how to replace academic journals and with what: 2026 Events — International #OpenAccessWeek […]
mastodon.social
Original post on mastodon.social
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 01/10/2026
@djoerd yep. But is an "Amazon Scholar"??
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Thomas Kahle @tomkalei.mathe.social.ap.brid.gy · 01/10/2026
RE: social.bund.de/@BzKJ/11736059807197… #fediEltern
social.bund.de
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Christof S. 🇪🇺 @christof.fedihum.org.ap.brid.gy · 30/09/2026
Am TCDH (Trier Center for Digital Humanities) der Universität Trier ist derzeit eine volle (!) unbefristete (!!) Stelle ausgeschrieben (m/w/d, E 13 TV-L)! Wir suchen jemanden für die Leitung unseres Forschungsbereichs „Digitale Literatur- und […] [Original post on fedihum.org]
Foto des TCDH-Teams vor unserem Gebäude, darunter der Beginn der Stellenausschreibung in Blau auf hellgrauem Grund.
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Jonathan Carroll @jonocarroll.fosstodon.org.ap.brid.gy · 01/10/2026
Oh, no! My R package {safespace} is in a broken state - won't someone (new to PRs) help me fix it??? I'm renewing my offer to guide newbies through the R package building / fixing / reviewing process during Hacktoberfest - see this post […]
fosstodon.org
Original post on fosstodon.org
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everton137 @everton137.social.vivaldi.net.ap.brid.gy · 30/09/2026
RE: chaos.social/@vgrass/11733251177434… If Germany has around 5 million weekly users on X, 1.7 million on Bluesky and 1.7 million on Mastodon, there is no reason for political communication to depend exclusively on X. Politicians can reach people beyond X, a social media platform […]
social.vivaldi.net
Original post on social.vivaldi.net
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Safeguarding Research/Culture @safeguardingresearch.fedihum.org.ap.brid.gy · 28/09/2026
Announcing: SRC in Sachsen-Anhalt - Rescuing public data before the change in government We look worriedly at the German state of Saxony-Anhalt. There are two ways on how we support all democrats and anti-fascists there: 1. Webarchiving of websites by the local government and agencies. 2 […]
fedihum.org
Original post on fedihum.org
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Safeguarding Research/Culture @safeguardingresearch.fedihum.org.ap.brid.gy · 28/09/2026
Safeguarding in Sachsen-Anhalt – Sicherung öffentlicher Daten vor dem Regierungswechsel Wir blicken besorgt auf Sachsen-Anhalt. Konkret unterstützen wir alle Demokrat*innen und Antifaschist*innen in Sachsen-Anhalt auf zweierlei Weise: 1. Webarchivierung von Regierungs- und Behördenseiten 2 […]
fedihum.org
Original post on fedihum.org
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Dr Micha Campbell @michcampbell.fediscience.org.ap.brid.gy · 30/09/2026
Hunter Valley coal expansion approved. I just don't know, hey. It's hard to feel much hope when our governments are so visionless. We often talk about how scientists haven't done a great job at communicating climate science (which is pretty offensive, we've been up against a billion dollar […]
fediscience.org
Original post on fediscience.org
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Haken dran @hakendran.social.heise.de.ap.brid.gy · 30/09/2026
Wer Facebook oder Instagram nutzt, stimme Menschenversuchen zu – und obwohl Meta weiß, was sie mit der Jugend machen, schauten sie bewusst weg. Dr. Anneke Buffone hat selbst als UX-Forscherin bei Meta gearbeitet - bis es für sie nicht mehr moralisch vertretbar war. Ich habe sie für eine […]
social.heise.de
Original post on social.heise.de
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 30/09/2026
My first poster since more than 10 years.... #MOPRED symposium Frankfurt, Germany.
Poster showing the Centre for Scientific Computing in Frankfurt, Germany. Or rather it's infrastructure.
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kim_harding ✅ @kim-harding.mastodon.scot.ap.brid.gy · 29/09/2026
French local authorities to replace WhatsApp with ‘sovereign’ encrypted messaging www.computerweekly.com/news/3666512… French local authorities to deploy ‘sovereign’ end-to-end encrypted messaging service in […]
mastodon.scot
Original post on mastodon.scot
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Jonatan Jalle Steller 🦖 @jonatan.mastodon.social.ap.brid.gy · 30/09/2026
On route to @hermes_datenkompetenzzentrum Open Colloquium in Marburg on behalf of @adwmainz.bsky.social. Grand Theft Autocomplete: 'AI' enclosures and their threat to data sovereignty 👾 doi.org/10.5281/zenodo.23047649 #LLM #Humanities #DataSovereignty #GLAM
Slide titled "How to respond to LLMs in the humanities?"
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Leave X - Protect Democracy @leavex.mastodon.social.ap.brid.gy · 29/09/2026
RE: chaos.social/@vgrass/11733251177434… EN: The new ARD/ZDF Media Study 2026 also highlights the use of decentralized social networks—yay! However, with only 2 percent of the German population using #Mastodon and #Bluesky, there’s still plenty of room for growth. At least #LeaveX […]
mastodon.social
Original post on mastodon.social
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BioHackrXiv @biohackrxiv.fediscience.org.ap.brid.gy · 29/09/2026
first 2027 #biohackathon listed is #SnakemakeHackathon2027 index.biohackrxiv.org/tag/Snakemake…
index.biohackrxiv.org
Snakemake Hackathon 2027
Preprints for BioHackathons
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petersuber @petersuber.fediscience.org.ap.brid.gy · 29/09/2026
Update. "Dutch Government is the latest to ditch Microsoft — US sanctions push Netherlands towards home-grown NixOS-based software." www.techradar.com/pro/dutch-governm… […]
fediscience.org
Original post on fediscience.org
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Helma @helma.mastodon.social.ap.brid.gy · 29/09/2026
"For me the discussion whether AI is actually (super)intelligent or will ‘go rogue’ is a red herring, that stops us from seeing the actual disruptive effect it is already having, and to hold those that are responsible to account." #AI #ClimateChange #Security #Privacy […]
mastodon.social
Original post on mastodon.social
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Snakemake Release Robot @snakemake.fediscience.org.ap.brid.gy · 29/09/2026
I am now bridged to Bluesky, too!
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 29/09/2026
I just discovered how to pin browser tabs. Now, a dozen or so redundant tabs are closed. Oh, sweet delights of modern computing! (NB I knew that feature. Newer tried it.) #academicchatter
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Prof Heino Falcke @hfalcke.mastodon.social.ap.brid.gy · 28/09/2026
Today we had the most unusual PhD defense of my career. Leon Houben fell 15 m in the Alps, landing on his head and loosing his memory while working on his PhD thesis. When he met me again, he had to google me. He had to re-learn everything and wrote two more […] [Original post on mastodon.social]
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Indio Gringo ® @paninid.mastodon.world.ap.brid.gy · 28/09/2026
🔥
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 28/09/2026
RE: mstdn.science/@laborjournal/1173486… Ein Beispiel, dass Schule machen sollte ...
mstdn.science
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Konrad Hinsen @khinsen.scholar.social.ap.brid.gy · 28/09/2026
"Beware cargo-cult reproducibility" by Lorena A Barba. On the transformation of "reproducible" into an increasingly meaningless quality label that becomes a victim of Goodheart's law.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 28/09/2026
@khinsen Interesting phrasing! The source would be this: lorenabarba.com/blog/beware-cargo-c… ?
lorenabarba.com
Beware cargo-cult reproducibility
Over just a few weeks, I received a string of very similar cold emails from seemingly unrelated senders. Each asks the same thing: would I perform a “bounded, independent reproduction” of a “frozen” computational package and return a signed attestation of exactly what I observed. Different names, different “institutes,” the same script. When I described the pattern on LinkedIn, my colleague Kyle Niemeyer replied within the hour that he’d been getting them too. So this is not a fluke aimed at one inbox; it’s a pattern. The senders speak a fluent language of computational rigor: frozen manifests, expected outputs, tolerances, hashes, known limitations, and attestation templates. They carefully reassure me that they are “not asking me to endorse” anything. The full vocabulary of computational reproducibility, deployed with unusual polish, is itself a tell of something fishy going on. ## The anatomy of the ask Looking closely, the requests share the same structure. The object to be reproduced is always chosen because it reproduces cleanly: a classical textbook calculation with a known analytical answer, or a public benchmark dataset anyone can download. Rerunning such a thing “independently” is nearly guaranteed to succeed, and succeeding proves nothing about the claim the sender actually cares about, likely some proprietary method, framework, or holdout result hiding behind a curtain of smoke. The reproduction is just a decoy. The rite is performed on a target selected precisely so that it cannot fail. What is being solicited, then, is not scrutiny; it is my name on a document that can later be cited as validation. A signed attestation that “Prof. Barba independently reproduced the package” transfers nicely into an investor deck, a grant narrative, a patent file, or a landing page, where the careful boundaries of what I actually checked fall away and only the endorsement-shaped residue remains. The ask is engineered to feel low-cost and high-virtue: bounded, neutral, adversarial, “a failure would be equally informative.” Every phrase is borrowed from genuine practice, which is exactly what makes the counterfeit convincing. And it is a counterfeit of something real. Independent reproduction is one of the most powerful instruments we have. Venues like the journal ReScience C exist precisely to publish careful, open, retrospective replications, and conference artifact-evaluation committees do serious, thankless work checking whether code truly produces the results a paper advertises. The cargo-cult version mimics the vocabulary of these efforts while inverting their purpose: real reproduction puts the claim at risk; this performs a ceremony that protects it. ## Why now, and why me I propose a name for the phenomenon: _AI-manufactured reproducibility theater_. The uncanny sameness across unrelated senders is probably not coordination; it is the same class of LLM tooling pointed at the public norms of my field and aimed back at me. Ask a model who ought to independently verify a computational result, and it will surface the field’s most visible names. The targeting is an artifact of visibility, nothing more, which is also why Kyle and no doubt others with a reproducibility profile are hearing from the same quarter. What the models added is scale and polish, not novelty. They industrialized a performance that was already being staged. This is uncomfortable, but it’s the reason I think this deserves more than a warning. With visibility come requests dressed in flattery and scholarly collaboration that quietly seek to borrow one’s reputation; I have fielded those for well over a decade. After a long commitment to reproducibility practice and advocacy, including as an expert contributor to the National Academies report _Reproducibility and Replicability in Science_ (2018), my honest assessment is that **very little has actually changed, apart from the performative**. Reproducibility became cool at some point, and much of what followed was ceremony: badges, statements, checklists, artifact links, much of it decoration. Consider that the most basic and most widely awarded artifact badge certifies only that files were deposited in a persistent archive, not that anyone verified them, nor that they work. About thirty years ago Buckheit and Donoho, channeling Jon Claerbout, claimed that a paper about computational results is not the scholarship but the advertisement for it; the scholarship is the code and data that produced the figures. We have spent decades getting more elaborate at the advertising. The current wave did not invent cargo-cult reproducibility (alluding to Feynman’s 1974 Caltech commencement address, “Cargo Cult Science“), but it did accelerate it, and the cold emails in my inbox are the logical endpoint: outreach that seeks the _appearance_ of verification with no verification inside. To colleagues, especially those with visibility: expect these messages, and read them for the gap between form and substance. Ask whether the proposed reproduction touches the claim or merely reproduces a decoy. Decline to lend your name to an attestation whose only real function is to be quoted as your endorsement. And if you do want to reproduce something, do it through a venue built to publish the results honestly, including negative ones. > Evidence is not the same as the performance of evidence.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 27/09/2026
@egonw I agree. Absolutely. However, we appear to lack a mechanism for it: There is not even (reliable) a way of flagging a data set to be associated with a retracted paper. Considering the heterogeneity of repositories and technologies for data deposits we need something akin to activity pub […]
fediscience.org
Original post on fediscience.org
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Egon Willighagen @egonw.social.edu.nl.ap.brid.gy · 27/09/2026
should we not be "Retracting datasets?" chem-bla-ics.linkedchemistry.info/2… doi.org/10.59350/x7zsv-0c792 #data #openscience "A bit over half a year ago, Markus Englund wrote about copy/paste errors in scientific datasets. I believe that many of […]
social.edu.nl
Original post on social.edu.nl
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Prof Heino Falcke @hfalcke.mastodon.social.ap.brid.gy · 27/09/2026
You can now listen to the live recording of the „Ongelooflijke Podcast“ in a packed theatre in Ede, which was also the Dutch premiere of my book „Tussen oerknal en apocalyps“ (Between Big Bang and Apocalypse). It was a lively discussion about the very […] [Original post on mastodon.social]
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
@khinsen evtl. www.thetrainline.com/de ? Die Qualität kann ich nicht beurteilen. Mich hat bahn.de zuletzt bis zum Schluss buchen lassen, um dann keine Zahlungsmethode anzubieten: Bis auf einen obskuren neuen Anbieter, war alles ausgegraut. Bin dann zum Schalter gegangen. Das ist […]
fediscience.org
Original post on fediscience.org
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
@michcampbell I have seen your post and was wondering: You have been cycling in this area, which is mostly grey (on the linked map), haven't you? Yes, that map is incomplete. And the situation is not as bad around Mainz as the map indicates. It is still awful compared to the area where I grew up […]
fediscience.org
Original post on fediscience.org
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Dr Micha Campbell @michcampbell.fediscience.org.ap.brid.gy · 24/09/2026
Another look at Perth's temperature, prompted by some online discussion that "I remember real scorchers as a kid, we just don't get that anymore" (I need to stop scrolling reddit). First, we can look at the distribution of Perth's daily max. temp - when we […] [Original post on fediscience.org]
A kernel density estimate for daily maximum temperature at perth airport, coloured by decade. The data show decadal distributions of temperature getting warmerA column chart of the number of days where daily perth max temp >40.3 degrees for each decade bewteen 1950 and 2026. There is a steady increase in the number of these extreme days.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
Oh well, it's ok-ish. The conversion into the GIF format is indeed not bad. (Need to look into the Fediscience-DB how big it actually is. My "raw" material was already downsampled to ~500 kB.) Still, perhaps a long term goal would be a peertube setup with comments and voice over instructions.
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
I made a screencast. This is not the final version. I am merely testing, how it will look on Mastodon. Wondering if it will display well at all. This screencast is a) accelerated, b) shrank, c) incomplete and d) recorded on an "old" cluster. I hope with new […] [Original post on fediscience.org]
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
RE: mastodon.social/@openresearchcalend… This is a course, where I particularly hope to find many, who are interested: Programming and executing #Snakemake workflows on #HPC clusters! My first few courses will be on-site, only. Might be that next time, I will run […]
fediscience.org
Original post on fediscience.org
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 25/09/2026
RE: mastodon.social/@openresearchcalend… This would be my course 😉 #Cpp #Frankfurt
mastodon.social
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Dr. Victoria Grinberg @vicgrinberg.mastodon.social.ap.brid.gy · 24/09/2026
Ich liebe es wenn Leute, die niemals deswegen ein Land haben fliehen müssen, Fenster eingeschlagen bekommen haben, auf der Strasse beschimpft sind, ihr Shirt von Klassenkameradan gerissen bekommen hatten, in der Schule bedroht worden sind, "die geben dir doch nur gute Noten und das Stipendium […]
mastodon.social
Original post on mastodon.social
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 24/09/2026
Am 1. Oktober veranstaltet die Gesellschaft für Informatik ein Online-Seminar zu "La Suite - The French way to Sovereignty in the Digital Workspace". La Suite ist eine einheitliche Kollaborationsplattform für Mitarbeiter des öffentlichen Dienstes, die auf Open-Source-Software basiert. Zur […]
fediscience.org
Original post on fediscience.org
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 23/09/2026
Today? A few meetings. One only with those doing the work. No superiors. So important! Got to write a few course announcements. The courses are already in indico and the German #HPC calendar. But not yet distributed via the various mailing lists. This requires a second pair of eyes. Now it is […]
fediscience.org
Original post on fediscience.org
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Prof Heino Falcke @hfalcke.mastodon.social.ap.brid.gy · 23/09/2026
RE: mastodon.nl/@venite/117316734987694… Als je zin hebt om een diepgaand gesprek met Gijs Groenteman te beluisteren in de podcast van de „Volkskrant“, kun je dat hier doen – we hebben het trouwens ook over Mastodon […]
mastodon.social
Original post on mastodon.social
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