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Naomi Gilbert

@negilbert.bsky.social
161 followers 281 following 11 posts

postdoc at Syracuse University studying viruses in geothermal protist systems 🦠 | microbial & viral ecology | she/her

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Reposted by Naomi Gilbert
Alexander Harms @aharms485.bsky.social · 25/09/2026
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
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H. B. Beryl Rappaport @hbrappap.bsky.social · 22/09/2026
Our description of fire amoeba, 𝘐𝘯𝘤𝘦𝘯𝘥𝘪𝘢𝘮𝘰𝘦𝘣𝘢 𝘤𝘢𝘴𝘤𝘢𝘥𝘦𝘯𝘴𝘪𝘴, is now online at Cell! Thanks @oliverio.bsky.social and amazing team for questioning the limits of eukaryotes! 🔥 www.cell.com/cell/fulltex...
cell.com
A geothermal amoeba sets a new upper temperature limit for eukaryotes
The amoeba Incendiamoeba cascadensis demonstrates that eukaryotic life can withstand temperatures beyond what was thought possible and sheds light on molecular strategies for survival in extreme heat.
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Naomi Gilbert @negilbert.bsky.social · 22/09/2026
So lucky to have been able to contribute to such a cool project! Congrats @hbrappap.bsky.social @oliverio.bsky.social 🎉🎉
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H. B. Beryl Rappaport @hbrappap.bsky.social · 22/09/2026
Since the preprint, we’ve added RNAseq experiments from @negilbert.bsky.social showing pathways upregulated at high temperature including proteostasis and membrane trafficking!
Figure showing upregulation vs. downregulation of gene pathways at 61 relative to 48C
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Mart Krupovic @mkrupovic.bsky.social · 11/09/2026
Why did some #viruses evolve to be #giants while others did not? Our perspective piece on this topic with Eugene Koonin. www.pnas.org/doi/10.1073/...
pnas.org
Why did some viruses evolve to be giants while others did not? | PNAS
Viruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ...
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Jennifer Biddle @jenbiddle.bsky.social · 31/08/2026
Please repost! Help Ira! gofund.me/a260ce658 🦠 #marinescience #studentloans #gofundme
gofund.me
Donate to Help Ira Stay at the University of Delaware, organized by Ira Washington
I’m Ira Washington, an undergraduate at the University of Delaware studying… Ira Washington needs your support for Help Ira Stay at the University of Delaware
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BejaLabTechnion @bejalab.bsky.social · 13/08/2026
Genomic catalogue of giant viruses reveals expanded diversity and functional potential www.nature.com/articles/s41...
nature.com
Genomic catalogue of giant viruses reveals expanded diversity and functional potential - Nature Microbiology
This curated genome-resolved, metagenomic resource expands the known diversity of Nucleocytoviricota and Mirusviricota lineages.
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Evgenii Protasov @evgenii-protasov.bsky.social · 11/08/2026
Giant viruses encode vitamin K–based redox modules for lipid modification #virus #viruses #vitamins #MicroSky @pnas.org www.pnas.org/doi/abs/10.1...
pnas.org
Giant viruses encode vitamin K–based redox modules for lipid modification | PNAS
Viruses with large DNA genomes often carry auxiliary metabolic genes that reprogram host physiology, yet their contributions to host redox and memb...
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Naomi Gilbert @negilbert.bsky.social · 07/08/2026
Super stoked to be presenting on geothermal viruses at our inaugural CNY ASM branch meeting this October! Hope to meet more local CNY labs there 😊🦠🧫
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Reposted by Naomi Gilbert
ISEP @isepprotists.bsky.social · 05/08/2026
New #ISEPpapers #PrePrint! Skiaviridae: a large DNA virus family that persistently infects thraustochytrid protists www.biorxiv.org/content/10.6... by Jessica Latimer et al. #Protists #Viruses #Microbes
electron microscopy images of microbial cells infected with viruses
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CNY ASM @cnyasm.bsky.social · 22/07/2026
Check out our exciting list of invited speakers for our fall branch meeting (Oct 16 in Syracuse, NY)! sites.google.com/view/cnyasm/... Stay tuned for registration information coming soon!
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Reposted by Naomi Gilbert
CNY ASM @cnyasm.bsky.social · 13/07/2026
Check out our latest Newsletter! heyzine.com/flip-book/b2...
heyzine.com
CNY ASM Branch Newsletter April - June 2026 | PDF to Flipbook
Created with the Heyzine flipbook maker
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Wilhelm Lab at the University of Tennessee @tn-marine-micro.bsky.social · 25/06/2026
We’re hiring! A joint Postdoc at UT Knoxville (Wilhelm & @dtalmy.bsky.social) to study Microcystis, oxidative stress, toxin production, and nutrient selection using lab, field, molecular, and modeling approaches. PhD required. Apply: fa-ewlq-saasfaprod1.fa.ocs.oraclecloud.com/hcmUI/Candid...
fa-ewlq-saasfaprod1.fa.ocs.oraclecloud.com
Post-Doctoral Research Associate: Freshwater Microbial Ecology - UTK
The Wilhelm and Talmy research groups in the Department of Microbiology at the University of Tennessee invites applications for a Postdoctoral Research Fellow to join an interdisciplinary project exam...
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Cameron Thrash @jcamthrash.bsky.social · 19/06/2026
Oxidative stress reshapes diatom-microbiome interactions by shifting benefits from mutualistic to opportunistic bacteria www.biorxiv.org/content/10.6... #jcampubs 🌊
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Joshua Weitz @joshuasweitz.bsky.social · 29/05/2026
Viruses are highly abundant in the oceans, but there is one place you won't typically find them: in global ocean ecosystem models... until now. Introducing "vDarwin", an explicit integration of viruses into the MITgcm/Darwin global ecosystem framework: www.biorxiv.org/content/10.6... a 🧵
Integration of a model of viral lysis, shunt and shuttle in a large scale ocean circulation model. (A) Schematic of the large scale ocean circulation model (MITgcm): major surface ocean circulation patterns and the schematic of the advection/diffusion are represented. Note that vertical grid spacing increases with depth (i.e., layers become thicker). (B) Simplified ecosystem represented in the study. For simplicity nitrogen remineralization to nitrite and nitrate and mortality fluxes to DOM and POM are not represented. (C) Schematic of the vDarwin ecosystem model integrated in the large scale circulation model. It represents a simplification of the ecosystem presented in (B) assuming that N is the limiting nutrient. It includes the growth of a single phytoplankton type, viral lysis, zooplankton grazing, the viral shunt and shuttle and remineralization (note that remineralizing bacteria are not explicitly represented).
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Reposted by Naomi Gilbert
Nature Microbiology @natmicrobiol.nature.com · 03/06/2026
Out Now! Mapping an ocean metabolite’s path #MicroSky
go.nature.com
Mapping an ocean metabolite’s path
Nature Microbiology, Published online: 02 June 2026; doi:10.1038/s41564-026-02362-ySeawater contains a complex tapestry of metabolites, but for most, the microorganisms and pathways that process them remain unknown. A metabolomics analysis links a particular marine metabolite, homarine, to its bacterial degraders, genes and metabolic products, providing a roadmap for linking metabolites to microbial function.
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Nature Microbiology @natmicrobiol.nature.com · 23/04/2026
Out Now! Giant viruses rewire control of cellular protein synthesis #MicroSky
go.nature.com
Giant viruses rewire control of cellular protein synthesis
Nature Microbiology, Published online: 23 April 2026; doi:10.1038/s41564-026-02338-yA giant mimivirus encodes its own cap-binding translation initiation complex, revealing an unexpected level of viral autonomy in rewiring host translation towards viral protein production.
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Elaine Luo @oceanmicrobes.bsky.social · 16/04/2026
New publication out @natcomms.nature.com! We identify novel viruses that actively infect highly productive chemoautotrophs, and reveal key trophic interactions and virus-host dynamics that impact microbial carbon cycling in aphotic environments. www.nature.com/articles/s41...
nature.com
Quantitative stable isotope probing (qSIP)-informed metagenomics identifies viruses infecting chemoautotrophs - Nature Communications
In this study, Luo and colleagues identify previously unknown viruses that actively infect highly productive chemoautotrophs. These findings provide new insights into key trophic interactions and&nbsp...
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Wilhelm Lab at the University of Tennessee @tn-marine-micro.bsky.social · 25/03/2026
A good read on a large virus... Extensive array of endogenous giant viral elements in a polar alga shows dynamic transcriptional response to abiotic stress: Current Biology www.cell.com/current-biol...
cell.com
Extensive array of endogenous giant viral elements in a polar alga shows dynamic transcriptional response to abiotic stress
Schultz et al. show that polar algae harbor extensive endogenous giant virus elements that are transcriptionally active, stress responsive, and integrated into host regulatory networks, highlighting v...
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Naomi Gilbert @negilbert.bsky.social · 19/03/2026
I am excited to share our new preprint on how iron limitation leads to cascading impacts on diatom carbon exudation and subsequent uptake and processing by heterotrophic bacteria. 🌊🦠
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Wilhelm Lab at the University of Tennessee @tn-marine-micro.bsky.social · 09/03/2026
Bermuda Atlantic Time Series surface waters contain thousands of viral populations with diel rhythms, forming “archetypes” that vary in abundance patterns, predicted hosts, taxonomy, and gene functions @sullivan-lab.bsky.social @joshuasweitz.bsky.social dx.plos.org/10.1371/jour...
dx.plos.org
Sub-daily virus sampling at the Bermuda Atlantic Time Series reveals diel and depth-structured population dynamics without community-level shifts
Viruses are often studied in disease settings, but in the ocean they outnumber cells and shape ecosystems, yet their dynamics remain poorly understood. In this study, high-resolution sampling of blue-...
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Reposted by Naomi Gilbert
Jennifer Biddle @jenbiddle.bsky.social · 05/03/2026
New paper out! We sat down and compiled all viral work in marine sediments. The water column has been getting a second look for viral interactions, its time for sediment to have the same! journals.asm.org/doi/10.1128/...
journals.asm.org
Viruses in marine sediments: a review of their effect on biogeochemistry and microbial interactions | Applied and Environmental Microbiology
In the ocean, viruses are known to mediate the carbon cycle, keeping dissolved organic carbon (DOC) in the microbial loop and preventing its movement into secondary consumers (1). However, few direct ...
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Thibaut Brunet @thibautbrunet.bsky.social · 28/02/2026
Final version @nature.com of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first @biorxivpreprint.bsky.social preprint (which we've kept updating). A brief 🧵 (carried over from the old place)
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Naomi Gilbert @negilbert.bsky.social · 18/02/2026
Press on our recent manuscript @us.theconversation.com @natcomms.nature.com feat. @tn-marine-micro.bsky.social iconic pic of the Sargasso 🌊
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Sofya Garushyants @garushyants.bsky.social · 17/02/2026
Koonin's lab in NIH is looking for postdocs. If you know someone who is interested, please spread the word. The details about the position are below: www.training.nih.gov/jobs/pdf-ecb...
training.nih.gov
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BejaLabTechnion @bejalab.bsky.social · 13/02/2026
Congratulations to Debbie Lindell for receiving the 2026 G. Evelyn Hutchinson Award from @aslo.org www.aslo.org/aslo-honors-...
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Joshua Weitz @joshuasweitz.bsky.social · 17/01/2026
Science in action... a research cruise to explore marine viruses & their microbial hosts made possible by NSF support and held together by the talents of @negilbert.bsky.social (now at Syracuse U) and Daniel Muratore (now at SFI), @camelia-s-gochev.bsky.social (of Technion) & many more...
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Joshua Weitz @joshuasweitz.bsky.social · 13/01/2026
New with @tn-marine-micro.bsky.social, exploring how viral-mediated infection and lysis can fuel the marine food web: theconversation.com/viruses-aren...
theconversation.com
Viruses aren’t all bad: In the ocean, some help fuel the food web – a new study shows how
Marine viruses attack cells, but the material that spills out helps fuels marine life around the world.
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Wilhelm Lab at the University of Tennessee @tn-marine-micro.bsky.social · 12/01/2026
Such a great team that included @sullivan-lab.bsky.social , @ab-knox.bsky.social, @jdebruyn.bsky.social, Debbie Lindell and so many amazing staff and students. And yes - still more to come from this project. artsci.utk.edu/ut-research-...
artsci.utk.edu
UT Research Shows Viral Impact on Ocean Oxygen - College of Arts and Sciences
An international research team unveils how viral lysis of blue-green algae in the Sargasso Sea enhances ecosystem-scale productivity. Newly published interdisciplinary research led by the University o...
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Naomi Gilbert @negilbert.bsky.social · 12/01/2026
Our paper on how viral lysis may influence system biogeochemistry in the Sargasso Sea subsurface oxygen max (SOM) is finally published! Thanks to all coauthors and especially @tn-marine-micro.bsky.social for providing the opportunity to work on this project integrating field work and modeling
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Naomi Gilbert @negilbert.bsky.social · 16/12/2025
congrats @atruch.bsky.social !! Can’t wait to read it
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angela oliverio @oliverio.bsky.social · 25/11/2025
Introducing ** Incendiamoeba **, a eukaryote that can live at temperatures well beyond what we thought possible. 63C!! Read @hbrappap.bsky.social thread to see what we’ve already started to learn from this amazing organism! doi.org/10.1101/2025... #MicroSky #protistsonsky 🧪 #evobio
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Naomi Gilbert @negilbert.bsky.social · 22/11/2025
Congrats @zepernickbn.bsky.social @tn-marine-micro.bsky.social ! 🦠
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Cameron Thrash @jcamthrash.bsky.social · 15/10/2025
Bacterial Volatile Organic Compound Specialists in the Phycosphere academic.oup.com/ismej/advanc... #jcampubs
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Naomi Gilbert @negilbert.bsky.social · 28/06/2025
#bloomscrolling paris blooms 🌸
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Naomi Gilbert @negilbert.bsky.social · 23/06/2025
Having a great time visiting Ghent, Belgium and attending #MLD8 to present my postdoc work on deciphering algal-bacterial interactions under iron limitation using #exometabolomics and #nanoSIP
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