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Colbie Reed, PhD, MS

@mindandmatter.bsky.social
186 followers 362 following 168 posts

PD Fellow at @medicalcollegeofwi.bsky.social ⚕️ Biocuration 🔎 Bioinformatics 🧬 Biomedical Ontologies 🩺 Better-applied science advocate ⚖️ Bismuth fangirl 👩🏻‍🎤🪨💎 Complex systems are my jam 🎸🎧🎶 Anime★Manga★Nerdcore *Thoughts are my own

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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 03/02/2026
True love is listening to a new audiobook of one of your favorite fantasy series & tapping away at some passion project-related work 🥰👩🏻‍💻
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 02/02/2026
If anyone was asking, paywall killed Popular Mechanics
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 30/01/2026
This is upsetting... Netflix Acquires Sydney Sweeney's Live-Action Adaptation Of Popular Sci-Fi Anime Franchise screenrant.com/gundam-live-...
screenrant.com
Netflix Acquires Sydney Sweeney's Live-Action Adaptation Of Popular Sci-Fi Anime Franchise
The Housemaid star lines up her next project.
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 22/01/2026
Congressman Issa (R) forced an aid to hold up a poster titled "Biden DOJ Enemies List" behind while he raved about the investigation by independent counsel into Jan 6th & how it was comparable to Watergate/the behavior of Nixon's cronies 😵‍💫 #GoP #GoPayout #desperados
I said "forced", here, bc this girl looks like she's under duress...
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 22/01/2026
SO to this Dropkick Murphys fan at the Capitol caught in-frame on today's CSPAN broadcast #fightingnazis
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 28/11/2025
Anime-unrelated: I've been partnering up & working on a private venture in the lane of applied ontologies👩🏻‍💻 All I gotta say is 'get ready' /repo/getready.md 😜
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 28/11/2025
Calling Disney's Twisted Wonderland series an "anime" makes me cringe with the utmost cringe. The pacing+writing (English dub) is frankly embarrassing. Some have called it "marketing slop", but imo it's much worse The Japanese dub at least allows the game VAs reprise but for a 💩quality isekai
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 03/11/2025
So.... I feel like we're not freaking out enough about Grokipedia This ring a particular historical 🔔 for anyone else?
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 31/10/2025
When life gives you lemons ... make steak for dinner 🙃
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 31/10/2025
Potentially out of bounds: ... But anyone else think the new Disney anime is garbage? I really don't think they 'get' it.
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 28/10/2025
Friendly reminder!🤗 You wouldn't be you without what you do🫶🏻 When you're stressed to the max bc of impending deadlines, remember to look back on what you've already accomplished🏆 'Done' is a great source of last minute ⛽ when you have some remaining to-dos💪🏻
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 14/10/2025
Wow. This is scifi af Artificial cells that can manipulate other cells 👀👀 www.nature.com/articles/s41...
nature.com
Client Challenge
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 11/10/2025
If a sitting US president cannot be tried in a criminal court, why is one allowed to pursue other litigation? E.g., lawsuits against companies, essentially allowing for augmentation of existing mechanisms by which the executive branch might strong-arm non-gov entities
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 05/10/2025
was looking into what we know about endosomes... but google had other ideas 😂
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 02/10/2025
Cleaning my apartment for my birthday ❤️ Happy birthday, me (honestly, no /s)
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Hao Yin @haoyin.bsky.social · 02/10/2025
🫠
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 02/10/2025
so I love history Was reading the Kurtis Froedtert wiki page & thought it was kinda empty-looking. Searches didn't give me much more 🤷‍♀️ But I did find this issue of The Daily Iowan in 1946 ft some crazy news w surprisingly familiar vibes #history #UShistory #nazis #politics #worldevents
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sher12.bsky.social @sher12.bsky.social · 29/09/2025
youtube.com/watch?v=0_Bw...
youtube.com
Netanyahu: Last Week Tonight with John Oliver (HBO)
YouTube video by LastWeekTonight
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 28/09/2025
I have to say that I appreciate UK police procedurals so much more than those set in the US. It's much easier to cheer on a cop when they aren't armed with over-kill gear against suspects who at most might have a knife #controversialopinion
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 23/09/2025
#WordOfTheDay ...or maybe the year?
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 18/09/2025
"The import of this history has never been clearer than in this moment when the hard question must be asked: If you would look away from the words of Charlie Kirk, from what else would you look away?" www.vanityfair.com/news/story/c...
vanityfair.com
Charlie Kirk, Redeemed: A Political Class Finds Its Lost Cause
By ignoring the rhetoric and actions of the Turning Point USA founder, pundits and politicians are sanitizing his legacy.
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 11/09/2025
Charlie Kirk is asked about the number of mass shootings that have happened over the past 10 years. Kirk answers this with a question: "Counting or not counting gang violence?" He is then fatally shot. Within the same hour, 3 are shot at a Colorado high school 470mi away.
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 10/09/2025
Looks like Florida is voluntarily rolling back to "developing nation" status for its public health... 😐 Pathogens don't care about your politics. The vulnerable will suffer. Remember who is responsible.
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 09/09/2025
The Donald Trump to Jeffrey Epstein birthday doodle is SO much more serial killer than I was expecting 👀
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 08/09/2025
3 years in the making... I think? Finally ready to send this massive manuscript over to our PI co-authors
media.tenor.com
a cartoon drawing of an older woman with glasses and a netflix logo in the corner
ALT: a cartoon drawing of an older woman with glasses and a netflix logo in the corner
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 01/09/2025
A lesser known trend we'll be seeing more & more as the climate continues to shift: record run-off from extreme weather events incl. sewage x debris x other waste impacting the safety of tributaries, beaches Ergo. High 💩 tide. #labordayweekend2025
usatoday.com
Beaches across US close during Labor Day weekend due to fecal contamination
The advisories are warning beachgoers across the country to avoid water contact due to potential illness risk from bacteria.
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Tau-Mu Yi @taumuyi.bsky.social · 22/08/2025
#BioMed
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Jerven Bolleman @jervenbolleman.genomic.social.ap.brid.gy · 29/08/2025
#UniProt The largest open+free #knowledgegraph in the life sciences. I will be talking about the why and the use cases at #semantics2025 5th of September 2025. Looking forward to seeing you all there! 2025-eu.semantics.cc/page/sessions?…
A short history of the UniProt RDF and SPARQL. After founding of UniProt in 2002, UniProt was available in #RDF since 2007, and has grown to a 225 billion statement/edge/triple knowledge graph queryable with #SPARQL
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 26/08/2025
Prediction: A virtual space in which AI agents & assistants can be interactively arranged, integrated, & aligned to create intermediated systems in a visual+easy way... The next great software will be an interface that gets it right. #AI #complexity #systems
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 24/08/2025
Workarounds for broadcast access restrictions these days are getting crazy... There's now video game-based simulation live streams on YouTube of real ongoing broadcasts of actual soccer matches #AI #simulation #sports
youtube.com
YouTube
Share your videos with friends, family, and the world
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 23/08/2025
Attempting to download Date Everything on steam & I'm getting a "Content Server Unreachable" error interrupting the download... Devastating or bullet dodged? 🤔
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 17/08/2025
I have to say ... Anime definitely makes decreasing my sugar intake a bit more challenging Why does anime food have to look so yummy???
media.tenor.com
a girl in a blue dress is eating cupcakes in front of a table full of cupcakes
ALT: a girl in a blue dress is eating cupcakes in front of a table full of cupcakes
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 14/08/2025
Microsoft... Will this ever actually mean anything? #everythingisalie
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 12/08/2025
a more granular "chicken or the egg" for my #evobio folx: specifically re. organ system evolution... Which evolved first, the GI or the reproductive system? I was leaning "GI" bc vacuoles being so obviously 'proto', but then I remembered bacterial conjugation... 🤔
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 03/08/2025
Feel free to quote me on this. The Summer Hikaru Died should be taught in film classes. The frequency, range, & general skill exercised in using metaphor vastly exceeds I think anything I've seen or read
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 03/08/2025
I've decided I'm going to start 🟦⛷️ about the anime I'm watching For better or worse... Who'm I kidding. It's clearly for the better ✌🏻✌🏻✌🏻
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 02/08/2025
Been learning Japanese using Bunpo Workin through an "s" column lesson this morning & Bunpo be usin this illustration for うそ (lie) 🤣💀
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 29/07/2025
A benchmark annotated free text dataset & some initial model trainings+testings for veterinary EHRs: PetEVAL Human patients & the requirements for handling their data can slow the prototyping & testing process 🤔 Great💡: R&D proof-of-concepts using veterinary data #advancement #AI
aclanthology.org
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 27/07/2025
Triple-effect correction for Cell Painting data never looked so 😍 www.nature.com/articles/s41...
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Mallory Harris, PhD @malar0ne.bsky.social · 25/07/2025
#SCIMaP estimates current & future economic losses in local communities across the US (counties & Congressional Districts). We explain our approach in a new preprint: www.medrxiv.org/content/10.1... (w @joshuasweitz.bsky.social @asinclair.bsky.social @cl10.bsky.social)
Faceted plot with panels for Atlanta, Pittsbrugh, and Houston. Focal counties (Dekalb, Alleghany, and Houston) are outlined. Surrounding counties are shaded by future estimated annual economic loss due to the proposed cap on indirect costs based on commuter flows that connect to a focal county (indicated by light pink outline).
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 26/07/2025
Currently preparing to submit my first postdoc professional development grant... But it seems like the NIH might be a no-go 👀 Proposal submissions at the NIH rn according to the internet:
media.tenor.com
an orange among us character with a green leaf is flying through space
ALT: an orange among us character with a green leaf is flying through space
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C&EN (Chemical & Engineering News) @cenmag.bsky.social · 23/07/2025
Researchers have made a curved form of anthracene, an organic compound, that captures and stores sunlight in its chemical bonds, releasing the energy as heat when triggered hours later. cen.acs.org/energy/solar... #chemsky 🧪
cen.acs.org
Curved molecule bottles sunlight and releases it as heat
Liquid anthracene morphs into high-energy isomer to store solar heat for use on demand hours later
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David Ho @davidho.bsky.social · 24/07/2025
I only regret that I had but one Columbia ID to shred for my country.
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David Ho @davidho.bsky.social · 24/07/2025
Is this how Columbia’s new admission will work, like the Fulbright process? First you get admitted by the university, but then a political panel decide if you or what you propose to study is too woke?
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 23/07/2025
I woke up with what feels like a billion-dollar idea... Without an idea of how to otherwise document the moment, here it is. Lol #change #progress #data
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 22/07/2025
For my fellow terminology nerds out there & those interested in domain expert input re. classifications of/definitions for medical observations, knowledge #wordnerd #definitions
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Tech Policy Press @techpolicypress.bsky.social · 22/07/2025
The UC Berkeley Center for Long-Term Cybersecurity's Shannon Pierson (‪@srpierson.bsky.social) took a close look at cybersecurity legislation passed in the 2025 legislative session to surface trends across US states. Here's what she found:
techpolicy.press
Emerging Trends in State Cyber Policy During the 2025 Legislative Session | TechPolicy.Press
UC Berkeley Center for Long-Term Cybersecurity's Shannon Pierson considers legislation passed in 2025 to surface the trends across states.
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Iddo Friedberg 🏁 𐤏𐤃𐤅 @iddux.bsky.social · 22/07/2025
Now up: Semi-Supervised Data-Integrated Feature Importance Enhances Performance and Interpretability of Biological Classification Tasks Jun Kim & @rbaltman.bsky.social #ProteinFunction #ismbeccb25 #bioinformatics
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Colbie Reed, PhD, MS @mindandmatter.bsky.social · 22/07/2025
New supplement trend targeting Americans with no understanding of chemistry: "molecular hydrogen" tablets The 1-⭐ review titled "*SCAM*!!" explaining that they detected 0 hydrogen in the water "before and after adding a tablet" is 💀... Truly incredible 🙃 a.co/d/cMysM5c
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EMBL-EBI @ebi.embl.org · 22/07/2025
How can we find out what’s really going on inside cells when we’re generating so much complex data? CORNETO is an open-source tool that uses machine learning to turn tangled omics datasets into clear maps of how genes, proteins, and signalling pathways interact. www.ebi.ac.uk/about/news/r... 🧪
ebi.ac.uk
CORNETO: machine learning to decode complex omics data
New tool combines biological knowledge with machine learning to help researchers extract meaningful insights from complex omics data.
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